| Year |
Citation |
Score |
| 2024 |
Goity A, Dovzhenok A, Lim S, Hong C, Loros J, Dunlap JC, Larrondo LF. Transcriptional rewiring of an evolutionarily conserved circadian clock. The Embo Journal. PMID 38627599 DOI: 10.1038/s44318-024-00088-3 |
0.811 |
|
| 2024 |
Goker S, Lee S, Hong CI. Monitoring Circadian Oscillations with a Bioluminescence Reporter in Organoids. Journal of Visualized Experiments : Jove. PMID 38436407 DOI: 10.3791/66381 |
0.518 |
|
| 2023 |
Chakravarty S, Hong CI, Csikász-Nagy A. Systematic analysis of negative and positive feedback loops for robustness and temperature compensation in circadian rhythms. Npj Systems Biology and Applications. 9: 5. PMID 36774353 DOI: 10.1038/s41540-023-00268-7 |
0.718 |
|
| 2022 |
Fawad JA, Luzader DH, Hanson GF, Moutinho TJ, McKinney CA, Mitchell PG, Brown-Steinke K, Kumar A, Park M, Lee S, Bolick DT, Medlock GL, Zhao JY, Rosselot AE, Chou CJ, ... ... Hong CI, et al. Histone deacetylase inhibition by gut microbe-generated short chain fatty acids entrains intestinal epithelial circadian rhythms. Gastroenterology. PMID 35934064 DOI: 10.1053/j.gastro.2022.07.051 |
0.353 |
|
| 2022 |
Park M, Cao Y, Hong CI. Methods for Assessing Circadian Rhythms and Cell Cycle in Intestinal Enteroids. Methods in Molecular Biology (Clifton, N.J.). 2482: 105-124. PMID 35610422 DOI: 10.1007/978-1-0716-2249-0_7 |
0.529 |
|
| 2022 |
Lee S, Hong CI. Organoids as Model Systems to Investigate Circadian Clock-Related Diseases and Treatments. Frontiers in Genetics. 13: 874288. PMID 35559029 DOI: 10.3389/fgene.2022.874288 |
0.518 |
|
| 2021 |
Rosselot AE, Park M, Kim M, Matsu-Ura T, Wu G, Flores DE, Subramanian KR, Lee S, Sundaram N, Broda TR, McCauley HA, Hawkins JA, Chetal K, Salomonis N, Shroyer NF, ... ... Hong CI, et al. Ontogeny and function of the circadian clock in intestinal organoids. The Embo Journal. e106973. PMID 34704277 DOI: 10.15252/embj.2020106973 |
0.423 |
|
| 2020 |
Liu X, Chen A, Caicedo-Casso A, Cui G, Du M, He Q, Lim S, Kim HJ, Hong CI, Liu Y. Author Correction: FRQ-CK1 interaction determines the period of circadian rhythms in Neurospora. Nature Communications. 11: 346. PMID 31937790 DOI: 10.1038/S41467-019-13862-3 |
0.417 |
|
| 2019 |
Liu X, Chen A, Caicedo-Casso A, Cui G, Du M, He Q, Lim S, Kim HJ, Hong CI, Liu Y. FRQ-CK1 interaction determines the period of circadian rhythms in Neurospora. Nature Communications. 10: 4352. PMID 31554810 DOI: 10.1038/S41467-019-12239-W |
0.581 |
|
| 2019 |
Baek M, Virgilio S, Lamb TM, Ibarra O, Andrade JM, Gonçalves RD, Dovzhenok A, Lim S, Bell-Pedersen D, Bertolini MC, Hong CI. Circadian clock regulation of the glycogen synthase () gene by WCC is critical for rhythmic glycogen metabolism in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31048503 DOI: 10.1073/Pnas.1815360116 |
0.538 |
|
| 2019 |
Fawad JA, Luzader D, Moutinho TJ, Mitchell P, Brown-Steinke K, Zhao JY, Hong C, Papin J, Moore SR. 154 – Gut Microbe-Produced Short Chain Fatty Acids Entrain Circadian Rhythms in Murine Enteroids by Histone Deacetylase Inhibition Gastroenterology. 156: S-36. DOI: 10.1016/S0016-5085(19)36867-2 |
0.344 |
|
| 2018 |
Ballweg R, Lee S, Han X, Maini PK, Byrne H, Hong CI, Zhang T. Unraveling the Control of Cell Cycle Periods during Intestinal Stem Cell Differentiation. Biophysical Journal. PMID 30467024 DOI: 10.1016/J.Bpj.2018.10.025 |
0.754 |
|
| 2018 |
Bellman J, Kim JK, Lim S, Hong CI. Modeling Reveals a Key Mechanism for Light-Dependent Phase Shifts of Neurospora Circadian Rhythms. Biophysical Journal. PMID 30139524 DOI: 10.1016/J.Bpj.2018.07.029 |
0.556 |
|
| 2018 |
Matsu-Ura T, Dovzhenok AA, Coradetti ST, Subramanian KR, Meyer DR, Kwon JJ, Kim C, Salomonis N, Glass NL, Lim S, Hong CI. Synthetic gene network with positive feedback loop amplifies cellulase gene expression in Neurospora crassa. Acs Synthetic Biology. PMID 29625007 DOI: 10.1021/Acssynbio.8B00011 |
0.313 |
|
| 2018 |
Hoffman CL, Luzader D, Hong C, Moore S. 761 - Circadian Rhythms of Intestinal Epithelial Cell Susceptibility to Clostridium Difficile Toxin B and Escherichia Coli Shiga Toxin 2 Gastroenterology. 154: S-161. DOI: 10.1016/S0016-5085(18)30951-X |
0.374 |
|
| 2018 |
Luzader D, Moutinho TJ, Mitchell P, Papin J, Hong C, Moore S. 274 - Gut Microbial Metabolites Modulate the Amplitude and Phase of PER2 and BMAL1 Circadian Rhythms in Intestinal Epithelial Cells and Organoids Gastroenterology. 154: S-67. DOI: 10.1016/S0016-5085(18)30681-4 |
0.491 |
|
| 2017 |
Matsu-Ura T, Moore SR, Hong CI. WNT Takes Two to Tango: Molecular Links between the Circadian Clock and the Cell Cycle in Adult Stem Cells. Journal of Biological Rhythms. 748730417745913. PMID 29277155 DOI: 10.1177/0748730417745913 |
0.581 |
|
| 2017 |
Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, ... ... Hong C, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663 |
0.702 |
|
| 2017 |
Liu X, Dang Y, Matsu-Ura T, He Y, He Q, Hong CI, Liu Y. DNA Replication Is Required for Circadian Clock Function by Regulating Rhythmic Nucleosome Composition. Molecular Cell. PMID 28648778 DOI: 10.1016/J.Molcel.2017.05.029 |
0.535 |
|
| 2016 |
Matsu-Ura T, Dovzhenok A, Aihara E, Rood J, Le H, Ren Y, Rosselot AE, Zhang T, Lee C, Obrietan K, Montrose MH, Lim S, Moore SR, Hong CI. Intercellular Coupling of the Cell Cycle and Circadian Clock in Adult Stem Cell Culture. Molecular Cell. PMID 27867006 DOI: 10.1016/J.Molcel.2016.10.015 |
0.804 |
|
| 2016 |
Lee KK, Labiscsak L, Ahn CH, Hong CI. Spiral-based microfluidic device for long-term time course imaging of Neurospora crassa with single nucleus resolution. Fungal Genetics and Biology : Fg & B. PMID 27345439 DOI: 10.1016/J.Fgb.2016.06.004 |
0.332 |
|
| 2016 |
Ren Y, Hong CI, Lim S, Song S. Finding Clocks in Genes: A Bayesian Approach to Estimate Periodicity. Biomed Research International. 2016: 3017475. PMID 27340654 DOI: 10.1155/2016/3017475 |
0.475 |
|
| 2016 |
Caicedo-Casso A, Kang HW, Lim S, Hong CI. Corrigendum: Robustness and period sensitivity analysis of minimal models for biochemical oscillators. Scientific Reports. 6: 18504. PMID 26753526 DOI: 10.1038/Srep18504 |
0.435 |
|
| 2016 |
Rosselot AE, Hong CI, Moore SR. Rhythm and bugs: circadian clocks, gut microbiota, and enteric infections. Current Opinion in Gastroenterology. 32: 7-11. PMID 26628099 DOI: 10.1097/Mog.0000000000000227 |
0.43 |
|
| 2016 |
Matsu-ura T, Dovzhenok A, Lim S, Hong CI. Development of Synthetic Gene Circuits to Amplify the Production of Biomaterials, Cellulases, and Lentivirus Biophysical Journal. 110: 317a. DOI: 10.1016/J.Bpj.2015.11.1702 |
0.339 |
|
| 2015 |
Aihara E, Mahe MM, Schumacher MA, Matthis AL, Feng R, Ren W, Noah TK, Matsu-Ura T, Moore SR, Hong CI, Zavros Y, Herness S, Shroyer NF, Iwatsuki K, Jiang P, et al. Characterization of stem/progenitor cell cycle using murine circumvallate papilla taste bud organoid. Scientific Reports. 5: 17185. PMID 26597788 DOI: 10.1038/Srep17185 |
0.382 |
|
| 2015 |
Chen S, Brunskill EW, Potter SS, Dexheimer PJ, Salomonis N, Aronow BJ, Hong CI, Zhang T, Kopan R. Intrinsic Age-Dependent Changes and Cell-Cell Contacts Regulate Nephron Progenitor Lifespan. Developmental Cell. 35: 49-62. PMID 26460946 DOI: 10.1016/J.Devcel.2015.09.009 |
0.671 |
|
| 2015 |
Caicedo-Casso A, Kang HW, Lim S, Hong CI. Robustness and period sensitivity analysis of minimal models for biochemical oscillators. Scientific Reports. 5: 13161. PMID 26267886 DOI: 10.1038/Srep13161 |
0.435 |
|
| 2015 |
Cockrell AL, Pirlo RK, Babson DM, Cusick KD, Soto CM, Petersen ER, Davis MJ, Hong CI, Lee K, Fitzgerald LA, Biffinger JC. Suppressing the Neurospora crassa circadian clock while maintaining light responsiveness in continuous stirred tank reactors. Scientific Reports. 5: 10691. PMID 26031221 DOI: 10.1038/Srep10691 |
0.585 |
|
| 2015 |
Dovzhenok AA, Baek M, Lim S, Hong CI. Mathematical modeling and validation of glucose compensation of the neurospora circadian clock. Biophysical Journal. 108: 1830-9. PMID 25863073 DOI: 10.1016/J.Bpj.2015.01.043 |
0.506 |
|
| 2015 |
Matsu-ura T, Pruszka J, Aihara E, Dovzhenok AA, Montrose MH, Lim S, Moore SR, Hong C. 799 Robust Coupling of Cell Cycle and Circadian Rhythms in Mouse Enteroids Gastroenterology. 148: S-157. DOI: 10.1016/S0016-5085(15)30528-X |
0.6 |
|
| 2014 |
Zámborszky J, Csikász-Nagy A, Hong CI. Neurospora crassa as a model organism to explore the interconnected network of the cell cycle and the circadian clock. Fungal Genetics and Biology : Fg & B. 71: 52-7. PMID 25239547 DOI: 10.1016/J.Fgb.2014.08.014 |
0.816 |
|
| 2014 |
Moore SR, Pruszka J, Vallance J, Aihara E, Matsuura T, Montrose MH, Shroyer NF, Hong CI. Robust circadian rhythms in organoid cultures from PERIOD2::LUCIFERASE mouse small intestine. Disease Models & Mechanisms. 7: 1123-30. PMID 24997189 DOI: 10.1242/Dmm.014399 |
0.58 |
|
| 2014 |
Hong CI, Zámborszky J, Baek M, Labiscsak L, Ju K, Lee H, Larrondo LF, Goity A, Chong HS, Belden WJ, Csikász-Nagy A. Circadian rhythms synchronize mitosis in Neurospora crassa. Proceedings of the National Academy of Sciences of the United States of America. 111: 1397-402. PMID 24474764 DOI: 10.1073/Pnas.1319399111 |
0.809 |
|
| 2014 |
Xing J, Mather W, Hong C. Computational cell biology: past, present and future Interface Focus. 4: 20140027. DOI: 10.1098/Rsfs.2014.0027 |
0.514 |
|
| 2014 |
Moore SR, Pruszka J, Shroyer NF, Hong C. 140 Enteroids Derived From PERIOD2: LUCIFERASE Mice Autonomously Synchronize Circadian Rhythms Through a Steroid-Dependent Mechanism Gastroenterology. 146: S-39. DOI: 10.1016/S0016-5085(14)60135-9 |
0.581 |
|
| 2013 |
Lee KK, Ahn CH, Hong CI. Circadian rhythms in Neurospora crassa on a polydimethylsiloxane microfluidic device for real-time gas perturbations. Biomicrofluidics. 7: 44129. PMID 24404062 DOI: 10.1063/1.4819478 |
0.358 |
|
| 2013 |
Moore SR, Pruszka J, Vallance J, Shroyer NF, Hong C. 696 Small Intestine Explants and Enteroids Derived From Period2::Luciferase Mice Show Robust Circadian Rhythms Gastroenterology. 144: S-129. DOI: 10.1016/S0016-5085(13)60463-1 |
0.398 |
|
| 2009 |
Hong CI, Zámborszky J, Csikász-Nagy A. Minimum criteria for DNA damage-induced phase advances in circadian rhythms. Plos Computational Biology. 5: e1000384. PMID 19424508 DOI: 10.1371/Journal.Pcbi.1000384 |
0.813 |
|
| 2008 |
Tyson JJ, Hong CI, Thron CD, Novak B. A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM. Biophysical Journal. 77: 2411-7. PMID 20540926 DOI: 10.1016/S0006-3495(99)77078-5 |
0.641 |
|
| 2008 |
Hong CI, Ruoff P, Loros JJ, Dunlap JC. Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus. Genes & Development. 22: 3196-204. PMID 18997062 DOI: 10.1101/Gad.1706908 |
0.632 |
|
| 2008 |
Hong CI, Jolma IW, Loros JJ, Dunlap JC, Ruoff P. Simulating dark expressions and interactions of frq and wc-1 in the Neurospora circadian clock. Biophysical Journal. 94: 1221-32. PMID 17965132 DOI: 10.1529/Biophysj.107.115154 |
0.676 |
|
| 2007 |
Dunlap JC, Loros JJ, Colot HV, Mehra A, Belden WJ, Shi M, Hong CI, Larrondo LF, Baker CL, Chen CH, Schwerdtfeger C, Collopy PD, Gamsby JJ, Lambreghts R. A circadian clock in Neurospora: how genes and proteins cooperate to produce a sustained, entrainable, and compensated biological oscillator with a period of about a day. Cold Spring Harbor Symposia On Quantitative Biology. 72: 57-68. PMID 18522516 DOI: 10.1101/Sqb.2007.72.072 |
0.757 |
|
| 2007 |
Loros JJ, Dunlap JC, Larrondo LF, Shi M, Belden WJ, Gooch VD, Chen CH, Baker CL, Mehra A, Colot HV, Schwerdtfeger C, Lambreghts R, Collopy PD, Gamsby JJ, Hong CI. Circadian output, input, and intracellular oscillators: insights into the circadian systems of single cells. Cold Spring Harbor Symposia On Quantitative Biology. 72: 201-14. PMID 18419278 DOI: 10.1101/Sqb.2007.72.067 |
0.758 |
|
| 2007 |
Zámborszky J, Hong CI, Csikász Nagy A. Computational analysis of mammalian cell division gated by a circadian clock: quantized cell cycles and cell size control. Journal of Biological Rhythms. 22: 542-53. PMID 18057329 DOI: 10.1177/0748730407307225 |
0.83 |
|
| 2007 |
Hong CI, Conrad ED, Tyson JJ. A proposal for robust temperature compensation of circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America. 104: 1195-200. PMID 17229851 DOI: 10.1073/Pnas.0601378104 |
0.723 |
|
| 2006 |
Mehra A, Hong CI, Shi M, Loros JJ, Dunlap JC, Ruoff P. Circadian rhythmicity by autocatalysis. Plos Computational Biology. 2: e96. PMID 16863394 DOI: 10.1371/Journal.Pcbi.0020096 |
0.787 |
|
| 1997 |
Hong CI, Tyson JJ. A proposal for temperature compensation of the circadian rhythm in Drosophila based on dimerization of the per protein. Chronobiology International. 14: 521-9. PMID 9298287 DOI: 10.3109/07420529709001473 |
0.49 |
|
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