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Alexandra J Weisberg - Publications

Affiliations: 
Virginia Polytechnic Institute and State University, Blacksburg, VA, United States 
Area:
Plant/Microbe Interactions, Microbial Comparative Genomics, Molecular Evolution
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Jung JM, Rahman A, Schiffer AM, Weisberg AJ. Beav: a bacterial genome and mobile element annotation pipeline. Msphere. e0020924. PMID 39037262 DOI: 10.1128/msphere.00209-24  0.328
2024 Brown SRB, Bland R, McIntyre L, Shyng S, Weisberg AJ, Riutta ER, Chang JH, Kovacevic J. Genomic characterization of recovered from dairy facilities in British Columbia, Canada from 2007 to 2017. Frontiers in Microbiology. 15: 1304734. PMID 38585707 DOI: 10.3389/fmicb.2024.1304734  0.645
2023 Weisberg AJ, Pearce E, Kramer CG, Chang JH, Clarke CR. Diverse mobile genetic elements shaped the evolution of virulence. Microbial Genomics. 9. PMID 37930748 DOI: 10.1099/mgen.0.001127  0.639
2023 Rahman A, Manci M, Nadon C, Perez IA, Farsamin WF, Lampe MT, Le TH, Martínez LT, Weisberg AJ, Chang JH, Sachs JL. Competitive interference among rhizobia reduces benefits to hosts. Current Biology : Cb. 33: 3804. PMID 37699338 DOI: 10.1016/j.cub.2023.08.007  0.542
2023 Rahman A, Manci M, Nadon C, Perez IA, Farsamin WF, Lampe MT, Le TH, Torres Martínez L, Weisberg AJ, Chang JH, Sachs JL. Competitive interference among rhizobia reduces benefits to hosts. Current Biology : Cb. 33: 2988-3001.e4. PMID 37490853 DOI: 10.1016/j.cub.2023.06.081  0.625
2023 Waldburger L, Thompson MG, Weisberg AJ, Lee N, Chang JH, Keasling JD, Shih PM. Transcriptome architecture of the three main lineages of agrobacteria. Msystems. e0033323. PMID 37477440 DOI: 10.1128/msystems.00333-23  0.621
2023 Weisberg AJ, Chang JH. Mobile Genetic Element Flexibility as an Underlying Principle to Bacterial Evolution. Annual Review of Microbiology. PMID 37437216 DOI: 10.1146/annurev-micro-032521-022006  0.58
2023 Nofiani R, Ardiningsih P, Zahra STA, Sukito A, Weisberg AJ, Chang JH, Mahmud T. Genome features and secondary metabolite potential of the marine symbiont Streptomyces sp. RS2. Archives of Microbiology. 205: 244. PMID 37209150 DOI: 10.1007/s00203-023-03556-2  0.591
2023 Weisberg AJ, Wu Y, Chang JH, Lai EM, Kuo CH. Virulence and Ecology of Agrobacteria in the Context of Evolutionary Genomics. Annual Review of Phytopathology. PMID 37164023 DOI: 10.1146/annurev-phyto-021622-125009  0.644
2022 Iruegas Bocardo F, Weisberg AJ, Riutta ER, Kilday KB, Bonkowski JC, Creswell TC, Daughtrey M, Rane KK, Grünwald NJ, Chang JH, Putnam M. Whole genome sequencing-based tracing of a 2022 introduction and outbreak of pv. . Phytopathology. PMID 36515656 DOI: 10.1094/PHYTO-09-22-0321-R  0.647
2022 Weisberg AJ, Sachs JL, Chang JH. Dynamic Interactions Between Mega Symbiosis ICEs and Bacterial Chromosomes Maintain Genome Architecture. Genome Biology and Evolution. 14. PMID 35639596 DOI: 10.1093/gbe/evac078  0.555
2022 Weisberg AJ, Rahman A, Backus D, Tyavanagimatt P, Chang JH, Sachs JL. Pangenome Evolution Reconciles Robustness and Instability of Rhizobial Symbiosis. Mbio. e0007422. PMID 35416699 DOI: 10.1128/mbio.00074-22  0.647
2022 Onyeziri MC, Hardy GG, Natarajan R, Xu J, Reynolds IP, Kim J, Merritt PM, Danhorn T, Hibbing ME, Weisberg AJ, Chang JH, Fuqua C. Dual Adhesive Unipolar Polysaccharides Synthesized by Overlapping Biosynthetic Pathways in Agrobacterium tumefaciens. Molecular Microbiology. PMID 35191101 DOI: 10.1111/mmi.14887  0.6
2022 Nguyen HP, Weisberg AJ, Chang JH, Clarke CR. sp. nov., which causes potato common scab and is distributed across the world. International Journal of Systematic and Evolutionary Microbiology. 72. PMID 35085064 DOI: 10.1099/ijsem.0.005225  0.613
2022 Chou L, Lin YC, Haryono M, Santos MNM, Cho ST, Weisberg AJ, Wu CF, Chang JH, Lai EM, Kuo CH. Modular evolution of secretion systems and virulence plasmids in a bacterial species complex. Bmc Biology. 20: 16. PMID 35022048 DOI: 10.1186/s12915-021-01221-y  0.576
2022 Weisberg AJ, Miller M, Ream W, Grünwald NJ, Chang JH. Diversification of plasmids in a genus of pathogenic and nitrogen-fixing bacteria. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 377: 20200466. PMID 34839700 DOI: 10.1098/rstb.2020.0466  0.663
2021 Bland R, Waite-Cusic J, Weisberg AJ, Riutta ER, Chang JH, Kovacevic J. Adaptation to a Commercial Quaternary Ammonium Compound Sanitizer Leads to Cross-Resistance to Select Antibiotics in Isolated From Fresh Produce Environments. Frontiers in Microbiology. 12: 782920. PMID 35082767 DOI: 10.3389/fmicb.2021.782920  0.561
2021 Bland RN, Johnson JD, Waite-Cusic JG, Weisberg AJ, Riutta ER, Chang JH, Kovacevic J. Application of Whole Genome Sequencing to Understand Diversity and Presence of Genes Associated with Sanitizer Tolerance in from Produce Handling Sources. Foods (Basel, Switzerland). 10. PMID 34681501 DOI: 10.3390/foods10102454  0.631
2021 Wu CF, Weisberg AJ, Davis EW, Chou L, Khan S, Lai EM, Kuo CH, Chang JH. Diversification of the Type VI Secretion System in Agrobacteria. Mbio. e0192721. PMID 34517758 DOI: 10.1128/mBio.01927-21  0.658
2021 Quides KW, Weisberg AJ, Trinh J, Salaheldine F, Cardenas P, Lee HH, Jariwala R, Chang JH, Sachs JL. Experimental evolution can enhance benefits of rhizobia to novel legume hosts. Proceedings. Biological Sciences. 288: 20210812. PMID 34034525 DOI: 10.1098/rspb.2021.0812  0.617
2021 Weisberg AJ, Grünwald NJ, Savory EA, Putnam ML, Chang JH. Genomic Approaches to Plant-Pathogen Epidemiology and Diagnostics. Annual Review of Phytopathology. PMID 34030448 DOI: 10.1146/annurev-phyto-020620-121736  0.603
2021 Torres-Martínez L, Porter SS, Wendlandt CE, Purcell J, Ortiz-Barbosa GS, Rothschild J, Lampe M, Warisha F, Le T, Weisberg AJ, Chang JH, Sachs JL. Evolution of specialization in a plant-microbial mutualism is explained by the oscillation theory of speciation. Evolution; International Journal of Organic Evolution. PMID 33782951 DOI: 10.1111/evo.14222  0.59
2020 Zhou W, Posri P, Abugrain ME, Weisberg AJ, Chang JH, Mahmud T. Biosynthesis of the Nuclear Factor of Activated T Cells Inhibitor NFAT-133 in . Acs Chemical Biology. PMID 33284588 DOI: 10.1021/acschembio.0c00775  0.57
2020 Weisberg AJ, Kramer CG, Kotha RR, Luthria DL, Chang J, Clarke CR. A novel species-level group of Streptomyces exhibits variation in phytopathogenicity despite conservation of virulence loci. Molecular Plant-Microbe Interactions : Mpmi. PMID 33030393 DOI: 10.1094/MPMI-06-20-0164-R  0.661
2020 Nofiani R, Weisberg AJ, Tsunoda T, Panjaitan RGP, Brilliantoro R, Chang JH, Philmus B, Mahmud T. Antibacterial Potential of Secondary Metabolites from Indonesian Marine Bacterial Symbionts. International Journal of Microbiology. 2020: 8898631. PMID 32676116 DOI: 10.1155/2020/8898631  0.613
2020 Savory EA, Weisberg AJ, Stevens DM, Creason AL, Fuller SL, Pearce EM, Chang JH. Phytopathogenic Have Diverse Plasmids With Few Conserved Virulence Functions. Frontiers in Microbiology. 11: 1022. PMID 32523572 DOI: 10.3389/Fmicb.2020.01022  0.695
2020 Weisberg AJ, Davis EW, Tabima J, Belcher MS, Miller M, Kuo CH, Loper JE, Grünwald NJ, Putnam ML, Chang JH. Unexpected conservation and global transmission of agrobacterial virulence plasmids. Science (New York, N.Y.). 368. PMID 32499412 DOI: 10.1126/Science.Aba5256  0.677
2020 Gano-Cohen KA, Wendlandt CE, Al Moussawi K, Stokes PJ, Quides KW, Weisberg AJ, Chang JH, Sachs JL. Recurrent mutualism breakdown events in a legume rhizobia metapopulation. Proceedings. Biological Sciences. 287: 20192549. PMID 31992172 DOI: 10.1098/Rspb.2019.2549  0.644
2020 Vasebi Y, Khakvar R, Tian L, Moubarak P, Valentini F, Weisberg AJ, Vinatzer BA. Phenotypic characterization and phylogenetic analysis of Pseudomonas syringae strains associated with canker disease on apricot in Iran within the context of the global genetic diversity of the P. syringae complex European Journal of Plant Pathology. 158: 545-560. DOI: 10.1007/S10658-020-02101-X  0.431
2019 Turner SE, Pang YY, O'Malley MR, Weisberg AJ, Fraser VN, Yan Q, Chang J, Anderson JC. A DeoR-type transcription regulator is required for sugar-induced expression of type III secretion-encoding genes in pv. DC3000. Molecular Plant-Microbe Interactions : Mpmi. PMID 31829102 DOI: 10.1094/Mpmi-10-19-0290-R  0.623
2019 O'Malley MR, Weisberg AJ, Chang JH, Anderson JC. Re-evaluation of a Tn5::gacA mutant of Pseudomonas syringae pv. tomato DC3000 uncovers roles for uvrC and anmK in promoting virulence. Plos One. 14: e0223637. PMID 31600319 DOI: 10.1371/Journal.Pone.0223637  0.633
2019 Lopes LD, Weisberg AJ, Davis EW, Varize CS, Pereira E Silva MC, Chang JH, Loper JE, Andreote FD. Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil. Plos One. 14: e0223269. PMID 31581220 DOI: 10.1371/Journal.Pone.0223269  0.609
2019 Thapa SP, Davis EW, Lyu Q, Weisberg AJ, Stevens DM, Clarke CR, Coaker G, Chang JH. The Evolution, Ecology, and Mechanisms of Infection by Gram-Positive, Plant-Associated Bacteria. Annual Review of Phytopathology. PMID 31283433 DOI: 10.1146/Annurev-Phyto-082718-100124  0.636
2018 Muchero W, Sondreli KL, Chen JG, Urbanowicz BR, Zhang J, Singan V, Yang Y, Brueggeman RS, Franco-Coronado J, Abraham N, Yang JY, Moremen KW, Weisberg AJ, Chang JH, Lindquist E, et al. Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree. Proceedings of the National Academy of Sciences of the United States of America. PMID 30337484 DOI: 10.1073/Pnas.1804428115  0.628
2018 Davis EW, Tabima JF, Weisberg AJ, Lopes LD, Wiseman MS, Wiseman MS, Pupko T, Belcher MS, Sechler AJ, Tancos MA, Schroeder BK, Murray TD, Luster DG, Schneider WL, Rogers EE, et al. Evolution of the U.S. Biological Select Agent Rathayibacter toxicus. Mbio. 9. PMID 30154261 DOI: 10.1128/Mbio.01280-18  0.663
2018 Lopes LD, Pereira E Silva MC, Weisberg AJ, Davis EW, Yan Q, Varize CS, Wu CF, Chang JH, Loper JE, Andreote FD. Genome variations between rhizosphere and bulk soil ecotypes of a Pseudomonas koreensis population. Environmental Microbiology. PMID 30033663 DOI: 10.1111/1462-2920.14363  0.618
2018 Chang JH, Putnam ML, Grünwald NJ, Savory EA, Fuller SL, Weisberg AJ. Response to comments on "Evolutionary transitions between beneficial and phytopathogenic challenge disease management". Elife. 7. PMID 29737968 DOI: 10.7554/Elife.35852  0.521
2018 Eckshtain-Levi N, Weisberg AJ, Vinatzer BA. The population genetic test Tajima's D identifies genes encoding pathogen-associated molecular patterns and other virulence-related genes in Ralstonia solanacearum. Molecular Plant Pathology. 19: 2187-2192. PMID 29660239 DOI: 10.1111/Mpp.12688  0.438
2018 Savory EA, Fuller SL, Weisberg AJ, Thomas WJ, Gordon MI, Stevens DM, Creason AL, Belcher MS, Serdani M, Wiseman MS, Grünwald NJ, Putnam ML, Chang JH. Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management. Elife. 7. PMID 29533183 DOI: 10.7554/eLife.36350  0.497
2018 Dickinson CC, Weisberg AJ, Jelesko JG. Transient Heterologous Gene Expression Methods for Poison Ivy Leaf and Cotyledon Tissues Hortscience. 53: 242-246. DOI: 10.21273/Hortsci12421-17  0.358
2017 Savory EA, Fuller SL, Weisberg AJ, Thomas WJ, Gordon MI, Stevens DM, Creason AL, Belcher MS, Serdani M, Wiseman MS, Grünwald NJ, Putnam ML, Chang JH. Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management. Elife. 6. PMID 29231813 DOI: 10.7554/Elife.30925  0.697
2017 Weisberg AJ, Kim G, Westwood JH, Jelesko JG. Sequencing and De Novo Assembly of the Toxicodendron radicans (Poison Ivy) Transcriptome. Genes. 8. PMID 29125533 DOI: 10.3390/Genes8110317  0.742
2017 Lopes LD, Davis EW, Pereira E Silva MC, Weisberg AJ, Bresciani L, Chang JH, Loper JE, Andreote FD. Tropical soils are a reservoir for fluorescent Pseudomonas spp. biodiversity. Environmental Microbiology. PMID 29027341 DOI: 10.1111/1462-2920.13957  0.653
2017 Moore ER, Bullington BS, Weisberg AJ, Jiang Y, Chang J, Halsey KH. Morphological and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira pseudonana and other centric diatoms. Plos One. 12: e0181098. PMID 28686696 DOI: 10.1371/Journal.Pone.0181098  0.584
2017 Fuller SL, Savory E, Weisberg AJ, Buser JZ, Gordon MI, Putnam M, Chang JH. Isothermal amplification and lateral flow assay for detecting crown gall-causing Agrobacterium spp. Phytopathology. PMID 28569126 DOI: 10.1094/Phyto-04-17-0144-R  0.577
2016 Tabima JF, Everhart SE, Larsen MM, Weisberg AJ, Kamvar ZN, Tancos MA, Smart CD, Chang JH, Grünwald NJ. Microbe-ID: an open source toolbox for microbial genotyping and species identification. Peerj. 4: e2279. PMID 27602267 DOI: 10.7717/Peerj.2279  0.648
2016 Vinatzer B, Weisberg A, Monteil CL, Elmarakeby HA, Sheppard SK, Heath LS. A proposal for a genome similarity-based taxonomy for plant pathogenic bacteria that is sufficiently precise to reflect phylogeny, host range, and outbreak affiliation applied to Pseudomonas syringae sensu lato as a proof of concept. Phytopathology. PMID 27552324 DOI: 10.1094/Phyto-07-16-0252-R  0.495
2016 Davis Ii EW, Weisberg AJ, Tabima JF, Grunwald NJ, Chang JH. Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria. Peerj. 4: e2222. PMID 27547538 DOI: 10.7717/Peerj.2222  0.696
2015 Weisberg AJ, Elmarakeby HA, Heath LS, Vinatzer BA. Similarity-based codes sequentially assigned to ebolavirus genomes are informative of species membership, associated outbreaks, and transmission chains. Open Forum Infectious Diseases. 2: ofv024. PMID 26034773 DOI: 10.1093/Ofid/Ofv024  0.413
2015 Clarke CR, Studholme DJ, Hayes B, Runde B, Weisberg A, Cai R, Wroblewski T, Daunay MC, Wicker E, Castillo JA, Vinatzer BA. Genome-Enabled Phylogeographic Investigation of the Quarantine Pathogen Ralstonia solanacearum Race 3 Biovar 2 and Screening for Sources of Resistance Against Its Core Effectors. Phytopathology. 105: 597-607. PMID 25710204 DOI: 10.1094/Phyto-12-14-0373-R  0.446
2014 Dornfeld C, Weisberg AJ, K C R, Dudareva N, Jelesko JG, Maeda HA. Phylobiochemical characterization of class-Ib aspartate/prephenate aminotransferases reveals evolution of the plant arogenate phenylalanine pathway. The Plant Cell. 26: 3101-14. PMID 25070637 DOI: 10.1105/Tpc.114.127407  0.738
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