Siddharth S. Dey, Ph.D.
Affiliations: | Chemical Engineering | University of California, Berkeley, Berkeley, CA, United States |
Area:
viral gene delivery, stem cellsGoogle:
"Siddharth Dey"Parents
Sign in to add mentor| Goverdhan Mehta | research assistant | 2004 | IISc Bangalore (Chemistry Tree) | |
| David V. Schaffer | grad student | 2012 | UC Berkeley | |
| (A Computational and Experimental Approach to Understanding HIV-1 Evolution and Latency for the Design of Improved Antiviral Therapies.) | ||||
| Alexander van Oudenaarden | post-doc | 2012-2017 | Hubrecht Institute (Evolution Tree) | |
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Publications
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| Chirikian O, Faynus MA, Merk M, et al. (2024) YAP dysregulation triggers hypertrophy by CCN2 secretion and TGFβ uptake in human pluripotent stem cell-derived cardiomyocytes. Biorxiv : the Preprint Server For Biology |
| Chialastri A, Sarkar S, Schauer EE, et al. (2024) Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity. Nature Structural & Molecular Biology |
| Batjargal T, Zappa F, Grant RJ, et al. (2023) Optogenetic control of the integrated stress response reveals proportional encoding and the stress memory landscape. Cell Systems. 14: 551-562.e5 |
| Chialastri A, Sarkar S, Schauer EE, et al. (2023) Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity. Biorxiv : the Preprint Server For Biology |
| Chialastri A, Wangsanuwat C, Dey SS. (2021) Integrated single-cell sequencing of 5-hydroxymethylcytosine and genomic DNA using scH&G-seq. Star Protocols. 2: 101016 |
| Wangsanuwat C, Chialastri A, Aldeguer JF, et al. (2021) A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing. Cell Reports Methods. 1 |
| Sen M, Mooijman D, Chialastri A, et al. (2021) Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development. Nature Communications. 12: 1286 |
| Markodimitraki CM, Rang FJ, Rooijers K, et al. (2020) Simultaneous quantification of protein-DNA interactions and transcriptomes in single cells with scDam&T-seq. Nature Protocols |
| Gell JJ, Liu W, Sosa E, et al. (2020) An Extended Culture System that Supports Human Primordial Germ Cell-like Cell Survival and Initiation of DNA Methylation Erasure. Stem Cell Reports |
| Jang J, Han D, Golkaram M, et al. (2019) Control over single-cell distribution of G1 lengths by WNT governs pluripotency. Plos Biology. 17: e3000453 |