Lydia Lee Sohn, Ph.D. - Publications

Affiliations: 
Mechanical Engineering University of California, Berkeley, Berkeley, CA, United States 

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lai A, Hinz S, Dong A, Lustig M, LaBarge MA, Sohn LL. Multi-Zone Visco-Node-Pore Sensing: A Microfluidic Platform for Multi-Frequency Viscoelastic Phenotyping of Single Cells. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2406013. PMID 39308179 DOI: 10.1002/advs.202406013  0.326
2022 Lai A, Rex R, Cotner KL, Dong A, Lustig M, Sohn LL. Mechano-Node-Pore Sensing: A Rapid, Label-Free Platform for Multi-Parameter Single-Cell Viscoelastic Measurements. Journal of Visualized Experiments : Jove. PMID 36533823 DOI: 10.3791/64665  0.356
2022 Carey TR, Kozminsky M, Hall J, Vargas-Zapata V, Geiger K, Coscoy L, Sohn LL. Detecting Intact Virus Using Exogenous Oligonucleotide Labels. Analytical Chemistry. PMID 35584293 DOI: 10.1021/acs.analchem.2c00835  0.475
2022 Li B, Maslan A, Kitayama SE, Pierce C, Streets AM, Sohn LL. Mechanical phenotyping reveals unique biomechanical responses in retinoic acid-resistant acute promyelocytic leukemia. Iscience. 25: 103772. PMID 35141508 DOI: 10.1016/j.isci.2022.103772  0.674
2022 Carey T, Li B, Sohn LL. Node-Pore Sensing for Characterizing Cells and Extracellular Vesicles. Methods in Molecular Biology (Clifton, N.J.). 2394: 171-183. PMID 35094328 DOI: 10.1007/978-1-0716-1811-0_11  0.73
2021 Li B, Cotner KL, Liu NK, Hinz S, LaBarge MA, Sohn LL. Evaluating sources of technical variability in the mechano-node-pore sensing pipeline and their effect on the reproducibility of single-cell mechanical phenotyping. Plos One. 16: e0258982. PMID 34695165 DOI: 10.1371/journal.pone.0258982  0.679
2021 Kozminsky M, Carey TR, Sohn LL. DNA-Directed Patterning for Versatile Validation and Characterization of a Lipid-Based Nanoparticle Model of SARS-CoV-2. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2101166. PMID 34672117 DOI: 10.1002/advs.202101166  0.525
2021 Kozminsky M, Scheideler OJ, Li B, Liu NK, Sohn LL. Multiplexed DNA-Directed Patterning of Antibodies for Applications in Cell Subpopulation Analysis. Acs Applied Materials & Interfaces. PMID 34546726 DOI: 10.1021/acsami.1c15047  0.79
2021 Kahney EW, Zion EH, Sohn L, Viets-Layng K, Johnston R, Chen X. Characterization of histone inheritance patterns in the Drosophila female germline. Embo Reports. e51530. PMID 34031963 DOI: 10.15252/embr.202051530  0.329
2021 Carey TR, Kozminsky M, Hall J, Vargas-Zapata V, Geiger K, Coscoy L, Sohn LL. Toward Community Surveillance: Detecting Intact SARS-CoV-2 Using Exogeneous Oligonucleotide Labels. Medrxiv : the Preprint Server For Health Sciences. PMID 33791715 DOI: 10.1101/2021.03.23.21254201  0.475
2021 Cabral KA, Patterson DM, Scheideler OJ, Cole R, Abate AR, Schaffer DV, Sohn LL, Gartner ZJ. Simple, Affordable, and Modular Patterning of Cells using DNA. Journal of Visualized Experiments : Jove. PMID 33720126 DOI: 10.3791/61937  0.81
2020 Kozminsky M, Sohn LL. The promise of single-cell mechanophenotyping for clinical applications. Biomicrofluidics. 14: 031301. PMID 32566069 DOI: 10.1063/5.0010800  0.386
2020 Scheideler OJ, Yang C, Kozminsky M, Mosher KI, Falcón-Banchs R, Ciminelli EC, Bremer AW, Chern SA, Schaffer DV, Sohn LL. Recapitulating complex biological signaling environments using a multiplexed, DNA-patterning approach. Science Advances. 6: eaay5696. PMID 32206713 DOI: 10.1126/Sciadv.Aay5696  0.736
2019 Muncie JM, Falcón-Banchs R, Lakins JN, Sohn LL, Weaver VM. Patterning the Geometry of Human Embryonic Stem Cell Colonies on Compliant Substrates to Control Tissue-Level Mechanics. Journal of Visualized Experiments : Jove. PMID 31609314 DOI: 10.3791/60334  0.782
2019 Kim J, Li B, Scheideler OJ, Kim Y, Sohn LL. Visco-Node-Pore Sensing: A Microfluidic Rheology Platform to Characterize Viscoelastic Properties of Epithelial Cells. Iscience. 13: 214-228. PMID 30870780 DOI: 10.1016/J.Isci.2019.02.021  0.776
2019 Kozminsky M, Sohn L. Abstract 3752: Fabrication and validation of anin vitrobone marrow microenvironment for the study of prostate cancer progression Cancer Research. 79: 3752-3752. DOI: 10.1158/1538-7445.Am2019-3752  0.352
2018 Kim J, Han S, Lei A, Miyano M, Bloom J, Srivastava V, Stampfer MM, Gartner ZJ, LaBarge MA, Sohn LL. Characterizing cellular mechanical phenotypes with mechano-node-pore sensing. Microsystems & Nanoengineering. 4. PMID 29780657 DOI: 10.1038/Micronano.2017.91  0.574
2018 Jiang H, Sohn L, Huang H, Chen L. Single Cell Clustering Based on Cell-Pair Differentiability Correlation and Variance Analysis. Bioinformatics (Oxford, England). PMID 29771290 DOI: 10.1093/Bioinformatics/Bty390  0.415
2018 Han S, Kim J, Li R, Ma A, Kwan V, Luong K, Sohn LL. Hydrophobic Patterning-Based 3D Microfluidic Cell Culture Assay. Advanced Healthcare Materials. e1800122. PMID 29700986 DOI: 10.1002/Adhm.201800122  0.546
2018 Carey TR, Cotner KL, Li B, Sohn LL. Developments in label-free microfluidic methods for single-cell analysis and sorting. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1529. PMID 29687965 DOI: 10.1002/Wnan.1529  0.764
2018 Kim Y, Kim J, Scheideler O, Cimenelli E, Sohn LL. Microfluidic Rheology to Study Effects of Cell Cycle to Viscoelastic Properties of Epithelial Cells Biophysical Journal. 114: 541a. DOI: 10.1016/J.Bpj.2017.11.2954  0.561
2018 Li B, Kim J, Sohn LL. Mechanical Phenotyping of Acute Myeloid Leukemias for Predicting Response to Retinoic Acid Biophysical Journal. 114: 541a. DOI: 10.1016/J.Bpj.2017.11.2953  0.39
2017 Schiffman C, Lin C, Shi F, Chen L, Sohn L, Huang H. SIDEseq: A Cell Similarity Measure Defined by Shared Identified Differentially Expressed Genes for Single-Cell RNA sequencing Data. Statistics in Biosciences. 9: 200-216. PMID 30774736 DOI: 10.1007/S12561-017-9194-Z  0.447
2015 Han S, Shin Y, Jeong HE, Jeon JS, Kamm RD, Huh D, Sohn LL, Chung S. Constructive remodeling of a synthetic endothelial extracellular matrix. Scientific Reports. 5: 18290. PMID 26687334 DOI: 10.1038/Srep18290  0.303
2015 Balakrishnan KR, Whang JC, Hwang R, Hack JH, Godley LA, Sohn LL. Node-pore sensing enables label-free surface-marker profiling of single cells. Analytical Chemistry. 87: 2988-95. PMID 25625182 DOI: 10.1021/Ac504613B  0.636
2014 Mir MA, Scheideler O, Whang J, Sohn LL. Quantifying Cell-Surface Marker Expression Through Imaging of Transient Interactions Biophysical Journal. 106: 245a. DOI: 10.1016/J.Bpj.2013.11.1436  0.799
2014 Jabart E, Rangarajan S, Lieu C, Hack J, Conboy I, Sohn LL. A microfluidic method for the selection of undifferentiated human embryonic stem cells and in situ analysis Microfluidics and Nanofluidics. DOI: 10.1007/S10404-014-1485-9  0.501
2013 Chapman MR, Balakrishnan KR, Li J, Conboy MJ, Huang H, Mohanty SK, Jabart E, Hack J, Conboy IM, Sohn LL. Sorting single satellite cells from individual myofibers reveals heterogeneity in cell-surface markers and myogenic capacity. Integrative Biology : Quantitative Biosciences From Nano to Macro. 5: 692-702. PMID 23407661 DOI: 10.1039/C3Ib20290A  0.797
2013 Balakrishnan KR, Anwar G, Chapman MR, Nguyen T, Kesavaraju A, Sohn LL. Node-pore sensing: a robust, high-dynamic range method for detecting biological species. Lab On a Chip. 13: 1302-7. PMID 23386180 DOI: 10.1039/C3Lc41286E  0.602
2012 Chapman MR, Balakrishnan K, Conboy MJ, Mohanty SK, Jabart E, Li J, Huang H, Hack J, Conboy I, Sohn LL. Label-free screening of niche-to-niche variation in satellite stem cells using functionalized pores Bulletin of the American Physical Society. 38-42. DOI: 10.1039/9781849735278-00038  0.794
2012 Chapman MR, Sohn LL. Using a Light-Activated Culture Matrix to Determine the Microenvironmental Cues that Initiate Breast-Cancer Tumor Metastasis Biophysical Journal. 102: 176a. DOI: 10.1016/J.Bpj.2011.11.958  0.334
2012 Balakrishnan K, Chapman M, Conboy M, Mohanty S, Jabart E, Huang H, Hack J, Conboy I, Sohn L. Using Label-Free Screening to Investigate Stem-Cells from their Microanatomical Niche Biophysical Journal. 102: 726a. DOI: 10.1016/J.Bpj.2011.11.3942  0.795
2012 Balakrishnan K, Sohn LL. Cell Screening Using Resistive-Pulse Sensing Methods in Cell Biology. 112: 369-387. DOI: 10.1016/B978-0-12-405914-6.00021-4  0.632
2011 Chapman MR, Sohn LL. Label-free resistive-pulse cytometry. Methods in Cell Biology. 102: 127-57. PMID 21704838 DOI: 10.1016/B978-0-12-374912-3.00006-7  0.454
2010 Dylla-Spears R, Townsend JE, Jen-Jacobson L, Sohn LL, Muller SJ. Single-molecule sequence detection via microfluidic planar extensional flow at a stagnation point. Lab On a Chip. 10: 1543-9. PMID 20358051 DOI: 10.1039/B926847B  0.693
2009 Dylla-Spears R, Townsend JE, Sohn LL, Jen-Jacobson L, Muller SJ. Fluorescent marker for direct detection of specific dsDNA sequences. Analytical Chemistry. 81: 10049-54. PMID 19908852 DOI: 10.1021/Ac9019895  0.688
2009 Mohanty SK, Conboy M, Conboy I, Sohn LL. Stem-cell surface marker interrogation via resistive-pulse sensing: Screening for Sca-1 expression in mouse muscle stem cells Proceedings of Conference, Microtas 2009 - the 13th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 666-668.  0.306
2008 Carbonaro A, Mohanty SK, Huang H, Godley LA, Sohn LL. Cell characterization using a protein-functionalized pore Lab On a Chip - Miniaturisation For Chemistry and Biology. 8: 1478-1485. PMID 18818802 DOI: 10.1039/B801929K  0.727
2008 Shamloo A, Ma N, Poo MM, Sohn LL, Heilshorn SC. Endothelial cell polarization and chemotaxis in a microfluidic device. Lab On a Chip. 8: 1292-9. PMID 18651071 DOI: 10.1039/B719788H  0.319
2007 Saleh OA, Sohn LL. An on-chip artificial pore for molecular sensing Biomems and Biomedical Nanotechnology. 4: 35-53. DOI: 10.1007/978-0-387-25845-4_3  0.436
2006 Carbonaro A, Godley LA, Sohn LL. The NanoCytometer: Screening cells based on cell size Proceedings of 2006 International Conference On Microtechnologies in Medicine and Biology. 206-208. DOI: 10.1109/MMB.2006.251529  0.67
2006 Carbonaro A, Godley L, Sohn LL. Transit time of colloids in chemically functionalized artificial pores Micro Total Analysis Systems - Proceedings of Microtas 2006 Conference: 10th International Conference On Miniaturized Systems For Chemistry and Life Sciences. 1309-1311.  0.573
2005 Carbonaro A, Sohn LL. A resistive-pulse sensor chip for multianalyte immunoassays Lab On a Chip - Miniaturisation For Chemistry and Biology. 5: 1155-1160. PMID 16175273 DOI: 10.1039/B504827C  0.647
2004 Saleh OA, Sohn LL. Biological sensing with an on-chip resistive pulse analyzer. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 4: 2568-70. PMID 17270798 DOI: 10.1109/IEMBS.2004.1403738  0.485
2004 Saleh OA, Sohn LL. Biological sensing with an on-chip resistive pulse analyzer Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 26: 2568-2570.  0.429
2003 Saleh OA, Sohn LL. Direct detection of antibody-antigen binding using an on-chip artificial pore Proceedings of the National Academy of Sciences of the United States of America. 100: 820-824. PMID 12552089 DOI: 10.1073/Pnas.0337563100  0.536
2003 Saleh OA, Sohn LL. An artificial nanopore for molecular sensing Nano Letters. 3: 37-38. DOI: 10.1021/Nl0255202  0.532
2002 Saleh OA, Sohn LL. Correcting off-axis effects in an on-chip resistive-pulse analyzer Review of Scientific Instruments. 73: 4396-4398. DOI: 10.1063/1.1519932  0.494
2002 Bockrath M, Markovic N, Shepard A, Tinkham M, Gurevich L, Kouwenhoven LP, Wu MW, Sohn LL. Scanned Conductance Microscopy of Carbon Nanotubes and λ-DNA Nano Letters. 2: 187-190. DOI: 10.1021/Nl0100724  0.538
2001 Saleh OA, Sohn LL. Quantitative sensing of nanoscale colloids using a microchip Coulter counter Review of Scientific Instruments. 72: 4449-4451. DOI: 10.1063/1.1419224  0.466
2001 Klein DCG, Gurevich L, Janssen JW, Kouwenhoven LP, Carbeck JD, Sohn LL. Ordered stretching of single molecules of deoxyribose nucleic acid between microfabricated polystyrene lines Applied Physics Letters. 78: 2396-2398. DOI: 10.1063/1.1365099  0.308
2000 Sohn LL, Saleh OA, Facer GR, Beavis AJ, Allan RS, Notterman DA. Capacitance cytometry: Measuring biological cells one by one Proceedings of the National Academy of Sciences of the United States of America. 97: 10687-10690. PMID 10995481 DOI: 10.1073/Pnas.200361297  0.617
1996 Shaw TJ, Ferrari MJ, Sohn LL, Lee D, Tinkham M, Clarke J. Dynamic scaling of magnetic flux noise near the Kosterlitz-Thouless-Berezinskii transition in overdamped Josephson junction arrays. Physical Review Letters. 76: 2551-2554. PMID 10060728 DOI: 10.1103/Physrevlett.76.2551  0.5
1994 Sohn LL, Octavio M. Half-integer Shapiro steps in single-plaquette Josephson-junction arrays in a magnetic field. Physical Review. B, Condensed Matter. 49: 9236-9239. PMID 10009716 DOI: 10.1103/PhysRevB.49.9236  0.7
1994 Sohn LL, Wachters JJ, Geigenmüller U, Elion WJ, Mooij JE. Static and dynamic properties of vortices in a small Josephson-junction array Physica B: Physics of Condensed Matter. 194: 1059-1060. DOI: 10.1016/0921-4526(94)90859-1  0.307
1993 Sohn LL, Tuominen MT, Rzchowski MS, Free JU, Tinkham M. ac and dc properties of Josephson-junction arrays with long-range interaction. Physical Review. B, Condensed Matter. 47: 975-984. PMID 10005575 DOI: 10.1103/PhysRevB.47.975  0.453
1993 Sohn LL, Rzchowski MS, Free JU, Tinkham M. Phase transitions in Josephson-junction arrays with long-range interaction. Physical Review. B, Condensed Matter. 47: 967-974. PMID 10005574 DOI: 10.1103/PhysRevB.47.967  0.455
1992 Sohn LL, Rzchowski MS, Free JU, Tinkham M, Lobb CJ. Effect of current direction on the dynamics of Josephson-junction arrays. Physical Review. B, Condensed Matter. 45: 3003-3012. PMID 10001851 DOI: 10.1103/Physrevb.45.3003  0.637
1991 Sohn LL, Rzchowski MS, Free JU, Benz SP, Tinkham M, Lobb CJ. Absence of fractional giant Shapiro steps in diagonal Josephson-junction arrays. Physical Review. B, Condensed Matter. 44: 925-928. PMID 9999216 DOI: 10.1103/PhysRevB.44.925  0.604
1991 Rzchowski MS, Sohn LL, Tinkham M. Frequency dependence of Shapiro steps in Josephson-junction arrays. Physical Review. B, Condensed Matter. 43: 8682-8685. PMID 9996520 DOI: 10.1103/Physrevb.43.8682  0.485
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