Herman J.C. Berendsen

University of Groningen, Groningen, Netherlands 
molecular dynamics
"Herman Berendsen"

(1934 - 2019)

Mean distance: 9.02 (cluster 31)


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Jan Kommandeur grad student 1962 RUG
 (An NMR Study of Collagen Hydration)


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Marten Postma research assistant
Klaas Hallenga grad student 1972 RUG
Marcus A. Hemminga grad student 1974 RUG
Hommo Tjarko Edzes grad student 1976 RUG
Cor Dijkema grad student 1979 RUG
Jacob Martien ten Cate grad student 1979 RUG (Neurotree)
Jan F.M. Post grad student 1981 RUG
Siewert Jan Marrink grad student 1994 RUG
Arjan van der Vaart grad student 1995 RUG
Natasha M. Maurits grad student 1998 RUG (Neurotree)
Bert L. de Groot grad student 1994-1998 RUG (Neurotree)
Peter Tieleman grad student 1995-1998 RUG
Marcel Swart grad student 1998-2002 RUG
Edward T. Samulski post-doc 1969-1970 RUG
Wilfred F. van Gunsteren post-doc 1976-1978 RUG


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José Raúl Grigera collaborator RUG (Physics Tree)
BETA: Related publications


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Melo MN, Arnarez C, Sikkema H, et al. (2017) High-throughput simulations reveal membrane-mediated effects of alcohols on MscL gating. Journal of the American Chemical Society
Goga N, Melo MN, Rzepiela AJ, et al. (2015) Benchmark of Schemes for Multiscale Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 11: 1389-98
Goga N, Rzepiela AJ, de Vries AH, et al. (2012) Efficient Algorithms for Langevin and DPD Dynamics. Journal of Chemical Theory and Computation. 8: 3637-49
De Jong DH, Schäfer LV, De Vries AH, et al. (2011) Determining equilibrium constants for dimerization reactions from molecular dynamics simulations. Journal of Computational Chemistry. 32: 1919-28
Berendsen HJ. (2011) The relevance of distance statistics for protein folding. Journal of Biomolecular Structure & Dynamics. 28: 599-601; discussion
Van Der Spoel D, Lindahl E, Hess B, et al. (2005) GROMACS: fast, flexible, and free. Journal of Computational Chemistry. 26: 1701-18
van den Bosch M, Swart M, Snijders JG, et al. (2005) Calculation of the redox potential of the protein azurin and some mutants. Chembiochem : a European Journal of Chemical Biology. 6: 738-46
Saint-Martin H, Hess B, Berendsen HJ. (2004) An application of flexible constraints in Monte Carlo simulations of the isobaric--isothermal ensemble of liquid water and ice Ih with the polarizable and flexible mobile charge densities in harmonic oscillators model. The Journal of Chemical Physics. 120: 11133-43
Groenhof G, Bouxin-Cademartory M, Hess B, et al. (2004) Photoactivation of the photoactive yellow protein: why photon absorption triggers a trans-to-cis Isomerization of the chromophore in the protein. Journal of the American Chemical Society. 126: 4228-33
Flohil JA, Vriend G, Berendsen HJ. (2002) Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis. Proteins. 48: 593-604
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