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Todd Lowe

Affiliations: 
University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
Microbiology Biology, Molecular Biology, Biogeochemistry
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"Todd Lowe"
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Parents

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Children

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Aaron E. Cozen grad student 2008 UC Santa Cruz
David L. Bernick grad student 2010 UC Santa Cruz
Andrew V. Uzilov grad student 2013 UC Santa Cruz

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Publications

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Manning AC, Bashir MM, Jimenez AR, et al. (2024) Gammaherpesvirus infection triggers the formation of tRNA fragments from premature tRNAs. Biorxiv : the Preprint Server For Biology
Manning AC, Bashir MM, Jimenez AR, et al. (2024) Gammaherpesvirus infection alters transfer RNA splicing and triggers tRNA cleavage. Biorxiv : the Preprint Server For Biology
Holmes AD, Chan PP, Chen Q, et al. (2023) A standardized ontology for naming tRNA-derived RNAs based on molecular origin. Nature Methods
Marygold SJ, Chan PP, Lowe TM. (2022) Systematic identification of tRNA genes in . Micropublication Biology. 2022
Li G, Manning AC, Bagi A, et al. (2022) Distinct Stress-Dependent Signatures of Cellular and Extracellular tRNA-Derived Small RNAs. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2200829
Chan PP, Lin BY, Mak AJ, et al. (2021) tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes. Nucleic Acids Research
Sweeney BA, Hoksza D, Nawrocki EP, et al. (2021) R2DT is a framework for predicting and visualising RNA secondary structure using templates. Nature Communications. 12: 3494
Seal RL, Chen LL, Griffiths-Jones S, et al. (2020) A guide to naming human non-coding RNA genes. The Embo Journal. e103777
Thornlow BP, Armstrong J, Holmes AD, et al. (2019) Predicting transfer RNA gene activity from sequence and genome context. Genome Research
Lin BY, Chan PP, Lowe TM. (2019) tRNAviz: explore and visualize tRNA sequence features. Nucleic Acids Research
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