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Peter A. Kollman

University of California, San Francisco, San Francisco, CA 
computational chemistry, molecular modeling and bioinformatics
"Peter Andrew Kollman"

(1944 - 2001)

Mean distance: 7.83


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Thomas E. Cheatham grad student
Valerie D. Daggett grad student 1990 UCSF
Yaxiong X. Sun grad student 1994 UCSF
Wendy D. Cornell grad student 1995 UCSF
Maria C. Longuemare grad student 1995 UCSF
Guido Germano grad student 1995-1998 UCSF
Jed W. Pitera grad student 1999 UCSF
Carolina M. Reyes grad student 2000 UCSF
Wei Wang grad student 2000 UCSF
Lillian T. Chong grad student 2002 UCSF
Pradipta Bandyopadhyay post-doc UCSF
Brent P Krueger post-doc UCSF
Bernd Kuhn post-doc
Kenneth M. Merz, Jr. post-doc 1987-1989 UCSF
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Yang L, Tan CH, Hsieh MJ, et al. (2006) New-generation amber united-atom force field. The Journal of Physical Chemistry. B. 110: 13166-76
Beà I, Gotsev MG, Ivanov PM, et al. (2006) Chelate effect in cyclodextrin dimers: a computational (MD, MM/PBSA, and MM/GBSA) study. The Journal of Organic Chemistry. 71: 2056-63
Wang J, Wang W, Kollman PA, et al. (2006) Automatic atom type and bond type perception in molecular mechanical calculations. Journal of Molecular Graphics & Modelling. 25: 247-60
Minehardt TJ, Kollman PA, Cooke R, et al. (2006) The open nucleotide pocket of the profilin/actin x-ray structure is unstable and closes in the absence of profilin. Biophysical Journal. 90: 2445-9
Wang J, Kang X, Kuntz ID, et al. (2005) Hierarchical database screenings for HIV-1 reverse transcriptase using a pharmacophore model, rigid docking, solvation docking, and MM-PB/SA. Journal of Medicinal Chemistry. 48: 2432-44
Kuhn B, Kollman PA, Stahl M. (2004) Prediction of pKa shifts in proteins using a combination of molecular mechanical and continuum solvent calculations. Journal of Computational Chemistry. 25: 1865-72
Wang J, Wolf RM, Caldwell JW, et al. (2004) Development and testing of a general amber force field. Journal of Computational Chemistry. 25: 1157-74
Wen EZ, Hsieh MJ, Kollman PA, et al. (2004) Enhanced ab initio protein folding simulations in Poisson-Boltzmann molecular dynamics with self-guiding forces. Journal of Molecular Graphics & Modelling. 22: 415-24
Masukawa KM, Kollman PA, Kuntz ID. (2003) Investigation of neuraminidase-substrate recognition using molecular dynamics and free energy calculations. Journal of Medicinal Chemistry. 46: 5628-37
Duan Y, Wu C, Chowdhury S, et al. (2003) A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. Journal of Computational Chemistry. 24: 1999-2012
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