Lillian T. Chong, Ph.D.

Affiliations: 
1997-2002 Graduate Group in Biophysics University of California, San Francisco, San Francisco, CA 
 2002-2006 Chemistry Stanford University, Palo Alto, CA 
 2005-2006 IBM Almaden Research Center, San Jose, CA, United States 
 2006- Chemistry University of Pittsburgh, Pittsburgh, PA, United States 
Area:
computational biophysics
Website:
http://www.chem.pitt.edu/people/faculty
Google:
"Lillian Chong"
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SNBCP

Parents

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Bruce Tidor research assistant 1995-1997 MIT
Peter A. Kollman grad student 2002 UCSF
 (Computational studies of antibody and enzyme catalysis.)
Vijay S. Pande post-doc 2002-2006 Stanford
William C. Swope post-doc 2005-2006 IBM Research - Almaden

Children

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Ali Saglam grad student 2011- University of Pittsburgh
Adam Pratt grad student 2012- University of Pittsburgh
Matthew Zwier grad student 2013- Drake University
Corinn Durham grad student 2016- University of Pittsburgh
Reza Salari grad student 2009-2012 Washington University
Karl Debiec grad student 2011-2017 Epic Systems
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Publications

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Santhouse JR, Leung JMG, Chong LT, et al. (2023) Effects of altered backbone composition on the folding kinetics and mechanism of an ultrafast-folding protein. Chemical Science. 15: 675-682
Bogetti X, Bogetti A, Casto J, et al. (2023) Direct observation of negative cooperativity in a detoxification enzyme at the atomic level by EPR and simulation. Protein Science : a Publication of the Protein Society. e4770
Bogetti AT, Leung JMG, Russo JD, et al. (2023) A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]. Living Journal of Computational Molecular Science. 5
Yang DT, Gronenborn AM, Chong LT. (2022) Development and Validation of Fluorinated, Aromatic Amino Acid Parameters for Use with the AMBER ff15ipq Protein Force Field. The Journal of Physical Chemistry. A. 126: 2286-2297
Bogetti AT, Piston HE, Leung JMG, et al. (2022) A twist in the road less traveled: The AMBER ff15ipq-m force field for protein mimetics. The Journal of Chemical Physics. 153: 064101
Russo JD, Zhang S, Leung JMG, et al. (2022) WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale Applications. Journal of Chemical Theory and Computation
DeGrave AJ, Bogetti AT, Chong LT. (2021) The RED scheme: Rate-constant estimation from pre-steady state weighted ensemble simulations. The Journal of Chemical Physics. 154: 114111
Bogetti AT, Piston HE, Leung JMG, et al. (2020) A twist in the road less traveled: The AMBER ff15ipq-m force field for protein mimetics The Journal of Chemical Physics. 153: 064101
Chong L. (2020) Weighted Ensemble Simulation: Tackling the Challenges of Long-Timescale Kinetics Biophysical Journal. 118: 352a
Bogetti AT, Mostofian B, Dickson A, et al. (2019) A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0]. Living Journal of Computational Molecular Science. 1
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