Ronald M. Levy
Affiliations: | Chemistry | Rutgers University, New Brunswick, New Brunswick, NJ, United States |
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Parents
Sign in to add mentor| Martin J. Kushmerick | grad student | 1973-1976 | Harvard | |
| (Regulation of vertebrate striated muscle contraction in the presence and absence of calcium.) | ||||
| Martin Karplus | post-doc | 1976-1980 | Harvard | |
Children
Sign in to add trainee| Donna A Bassolino | grad student | 1985-1989 | Rutgers, New Brunswick |
| Indrani Choudhuri | post-doc | 2020- | Temple University |
| Teresa Head-Gordon | post-doc | 1989-1990 | Temple University |
| douglas b kitchen | post-doc | 1987-1991 | |
| Emilio Gallicchio | post-doc | 1997-2000 | Rutgers, New Brunswick |
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Publications
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| Haldane A, Levy RM. (2021) Mi3-GPU: MCMC-based inverse Ising inference on GPUs for protein covariation analysis Computer Physics Communications. 260: 107312 |
| Tse C, Wickstrom L, Kvaratskhelia M, et al. (2020) Exploring the Free-Energy Landscape and Thermodynamics of Protein-Protein Association. Biophysical Journal |
| Zhang BW, Matubayasi N, Levy RM. (2020) Cavity Particle in Aqueous Solution with a Hydrophobic Solute: Structure, Energetics, and Functionals. The Journal of Physical Chemistry. B |
| Levy RM. (2020) Insights into the energy landscapes of chromosome organization proteins from coevolutionary sequence variation and structural modeling. Proceedings of the National Academy of Sciences of the United States of America |
| Narayan B, Fathizadeh A, Templeton C, et al. (2019) The transition between active and inactive conformations of Abl kinase studied by rock climbing and Milestoning. Biochimica Et Biophysica Acta. General Subjects. 129508 |
| Cui D, Zhang BW, Tan Z, et al. (2019) Ligand Binding Thermodynamic Cycles: Hysteresis, LWHAM, and the Overlapping States Matrix. Journal of Chemical Theory and Computation |
| Sakae Y, Zhang BW, Levy RM, et al. (2019) Absolute Protein Binding Free Energy Simulations for Ligands with Multiple Poses, a Thermodynamic Path That Avoids Exhaustive Enumeration of the Poses. Journal of Computational Chemistry |
| Ishii Y, Yamamoto N, Matubayasi N, et al. (2019) Spatially-Decomposed Free Energy of Solvation Based on the Endpoint Density-Functional Method. Journal of Chemical Theory and Computation |
| Zhang BW, Arasteh S, Levy RM. (2019) The UWHAM and SWHAM Software Package. Scientific Reports. 9: 2803 |
| Xia J, Flynn W, Gallicchio E, et al. (2019) Massive-Scale Binding Free Energy Simulations of HIV Integrase Complexes Using Asynchronous Replica Exchange Framework Implemented on the IBM WCG Distributed Network. Journal of Chemical Information and Modeling |