Peggy J. Farnham
Affiliations: | 1987-2004 | University of Wisconsin, Madison, Madison, WI | |
| 2004-2010 | University of California, Davis, Davis, CA | ||
| 2011- | Biochemistry | University of Southern California, Los Angeles, CA, United States |
Area:
Human Genomics, Transcriptional RegulationWebsite:
http://pibbs.usc.edu/faculty/profile/?fid=205Google:
"Peggy Farnham"Mean distance: 9.64 | S | N | B | C | P |
Parents
Sign in to add mentor| Terry Platt | grad student | 1982 | Yale | |
| (In vitro studies on rho-independent termination of transcription in E. coli) | ||||
| Robert T. Schimke | post-doc | 1983-1986 | Stanford | |
Children
Sign in to add trainee| Amy S. Weinmann | grad student | (Cell Biology Tree) | |
| Traci Lee | grad student | 1993-1999 | UW Madison |
| Susanna Marie Mac | grad student | 2000 | UW Madison |
| Scott Russell Eberhardy | grad student | 2002 | UW Madison |
| Carrie Renee Graveel | grad student | 2002 | UW Madison |
| Matthew James Oberley | grad student | 2003 | UW Madison |
| Antonis Kirmizis | grad student | 2004 | UW Madison |
| Luis G. Acevedo | grad student | 2007 | UW Madison |
| Vitalina M. Komashko | grad student | 2009 | UC Davis |
| Kimberly Rose Blahnik | grad student | 2010 | UC Davis |
| Alina Rabinovich Cao | grad student | 2010 | UC Davis |
| Sushma S. Iyengar | grad student | 2011 | UC Davis |
| Matt Ralph Grimmer | grad student | 2014 | UC Davis |
| Seth E. Frietze | post-doc | USC (Cell Biology Tree) |
BETA: Related publications
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Publications
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| Hodara E, Mades A, Swartz L, et al. (2023) mA epitranscriptome analysis reveals differentially methylated transcripts that drive early chemoresistance in bladder cancer. Nar Cancer. 5: zcad054 |
| de Mendoza A, Nguyen TV, Ford E, et al. (2022) Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability. Genome Biology. 23: 163 |
| Mullen DJ, Yan C, Kang DS, et al. (2020) TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma. Plos Genetics. 16: e1009023 |
| Moore JE, Purcaro MJ, et al. (2020) Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710 |
| Ni W, Perez AA, Schreiner S, et al. (2020) Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters. Nucleic Acids Research |
| Luo Z, Farnham PJ. (2020) Genome-wide analysis of HOXC4 and HOXC6 regulated genes and binding sites in prostate cancer cells. Plos One. 15: e0228590 |
| Mullen DJ, Yan C, Kang DS, et al. (2020) Abstract 3584: CENPA, MYBL2, and FOXM1 are identified as key transcriptional regulators in lung adenocarcinoma using TENET 2.0 Cancer Research. 80: 3584-3584 |
| Rhie SK, Perez AA, Lay FD, et al. (2019) A high-resolution 3D epigenomic map reveals insights into the creation of the prostate cancer transcriptome. Nature Communications. 10: 4154 |
| Qian Y, Zhang L, Cai M, et al. (2019) The prostate cancer risk variant rs55958994 regulates multiple gene expression through extreme long-range chromatin interaction to control tumor progression. Science Advances. 5: eaaw6710 |
| O'Geen H, Bates SL, Carter SS, et al. (2019) Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner. Epigenetics & Chromatin. 12: 26 |