| Year |
Citation |
Score |
| 2020 |
Chng KR, Li C, Bertrand D, Ng AHQ, Kwah JS, Low HM, Tong C, Natrajan M, Zhang MH, Xu L, Ko KKK, Ho EXP, Av-Shalom TV, Teo JWP, Khor CC, ... ... Chen SL, et al. Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment. Nature Medicine. PMID 32514171 DOI: 10.1038/S41591-020-0894-4 |
0.357 |
|
| 2019 |
Chen SL, Ding Y, Apisarnthanarak A, Kalimuddin S, Archuleta S, Omar SFS, De PP, Koh TH, Chew KL, Atiya N, Suwantarat N, Velayuthan RD, Wong JGX, Lye DC. The higher prevalence of extended spectrum beta-lactamases among Escherichia coli ST131 in Southeast Asia is driven by expansion of a single, locally prevalent subclone. Scientific Reports. 9: 13245. PMID 31519972 DOI: 10.1038/S41598-019-49467-5 |
0.33 |
|
| 2019 |
Chen SL. Genomic Insights Into the Distribution and Evolution of Group B Streptococcus. Frontiers in Microbiology. 10: 1447. PMID 31316488 DOI: 10.3389/Fmicb.2019.01447 |
0.353 |
|
| 2019 |
Barkham T, Zadoks RN, Azmai MNA, Baker S, Bich VTN, Chalker V, Chau ML, Dance D, Deepak RN, van Doorn HR, Gutierrez RA, Holmes MA, Huong LNP, Koh TH, Martins E, ... ... Chen SL, et al. One hypervirulent clone, sequence type 283, accounts for a large proportion of invasive Streptococcus agalactiae isolated from humans and diseased tilapia in Southeast Asia. Plos Neglected Tropical Diseases. 13: e0007421. PMID 31246981 DOI: 10.1371/Journal.Pntd.0007421 |
0.317 |
|
| 2019 |
Sinha S, Nge CE, Leong CY, Ng V, Crasta S, Alfatah M, Goh F, Low KN, Zhang H, Arumugam P, Lezhava A, Chen SL, Kanagasundaram Y, Ng SB, Eisenhaber F, et al. Genomics-driven discovery of a biosynthetic gene cluster required for the synthesis of BII-Rafflesfungin from the fungus Phoma sp. F3723. Bmc Genomics. 20: 374. PMID 31088369 DOI: 10.1186/S12864-019-5762-6 |
0.3 |
|
| 2019 |
Yang E, Chee JLY, Duraiswamy S, Chen S, Lees K, Chen SL. Isolation of Single Intracellular Bacterial Communities Generated from a Murine Model of Urinary Tract Infection for Downstream Single-cell Analysis. Journal of Visualized Experiments : Jove. PMID 31058882 DOI: 10.3791/58829 |
0.328 |
|
| 2018 |
Batty EM, Chaemchuen S, Blacksell S, Richards A, Paris D, Bowden R, Chan C, Lachumanan R, Day N, Donnelly P, Chen S, Salje J. Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi. Plos Neglected Tropical Diseases. 12: e0006566. PMID 29874223 DOI: 10.1371/Journal.Pntd.0006566 |
0.377 |
|
| 2018 |
Bergin SM, Periaswamy B, Barkham T, Chua HC, Mok YM, Fung DSS, Su AHC, Lee YL, Chua MLI, Ng PY, Soon WJW, Chu CW, Tan SL, Meehan M, Ang BSP, ... ... Chen SL, et al. An Outbreak of Streptococcus pyogenes in a Mental Health Facility: Advantage of Well-Timed Whole-Genome Sequencing Over emm Typing. Infection Control and Hospital Epidemiology. 1-9. PMID 29739475 DOI: 10.1017/Ice.2018.101 |
0.309 |
|
| 2018 |
Hertzog BB, Kaufman Y, Biswas D, Ravins M, Ambalavanan P, Wiener R, Angeli V, Chen SL, Hanski E. A Sub-population of Group A Streptococcus Elicits a Population-wide Production of Bacteriocins to Establish Dominance in the Host. Cell Host & Microbe. 23: 312-323.e6. PMID 29544095 DOI: 10.1016/J.Chom.2018.02.002 |
0.311 |
|
| 2018 |
Duraiswamy S, Chee JLY, Chen S, Yang E, Lees K, Chen SL. Purification of intracellular bacterial communities during experimental urinary tract infection reveals an abundant and viable bacterial reservoir. Infection and Immunity. PMID 29378794 DOI: 10.1128/Iai.00740-17 |
0.387 |
|
| 2018 |
Koh TH, Abdul Rahman NB, Teo JWP, La MV, Periaswamy B, Chen SL. Draft Genome Sequence of Singapore Klebsiella pneumoniae subsp. pneumoniae Isolate DS32358_14, Which Contains the Carbapenemase Gene blaVIM-1. Genome Announcements. 6. PMID 29301903 DOI: 10.1128/Genomea.01377-17 |
0.379 |
|
| 2018 |
Soh JYK, Russell CW, Fenlon SN, Chen SL. Complete Genome Sequence of Photobacterium leiognathi Strain JS01. Genome Announcements. 6. PMID 29301879 DOI: 10.1128/Genomea.01396-17 |
0.359 |
|
| 2017 |
Chau ML, Chen SL, Yap M, Hartantyo SHP, Chiew PKT, Fernandez CJ, Wong WK, Fong RK, Tan WL, Tan BZY, Ng Y, Aung KT, Mehershahi KS, Goh C, Kang JSL, et al. Group B Streptococcus Infections Caused by Improper Sourcing and Handling of Fish for Raw Consumption, Singapore, 2015-2016. Emerging Infectious Diseases. 23. PMID 29148967 DOI: 10.3201/Eid2312.170596 |
0.31 |
|
| 2017 |
Koh TH, Abdul Rahman NB, Teo JWP, La MV, Periaswamy B, Chen SL. Putative Integrative Mobile Elements that exploit the Xer Recombination Machinery Carrying blaIMI-type Carbapenemase Genes in the Enterobacter cloacae complex in Singapore. Antimicrobial Agents and Chemotherapy. PMID 29038281 DOI: 10.1128/Aac.01542-17 |
0.32 |
|
| 2017 |
Chen S, Larsson M, Robinson RC, Chen SL. Direct and convenient measurement of plasmid stability in lab and clinical isolates of E. coli. Scientific Reports. 7: 4788. PMID 28684862 DOI: 10.1038/S41598-017-05219-X |
0.323 |
|
| 2017 |
Kalimuddin S, Chen SL, Lim CTK, Koh TH, Tan TY, Kam M, Wong CW, Mehershahi KS, Chau ML, Ng LC, Tang WY, Badaruddin H, Teo J, Apisarnthanarak A, Suwantarat N, et al. 2015 Epidemic of Severe Streptococcus agalactiae Sequence Type 283 Infections in Singapore Associated With the Consumption of Raw Freshwater Fish: A Detailed Analysis of Clinical, Epidemiological, and Bacterial Sequencing Data. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 64: S145-S152. PMID 28475781 DOI: 10.1093/Cid/Cix021 |
0.345 |
|
| 2017 |
Mehershahi KS, Chen SL. Complete Genome Sequence of the Uropathogenic Escherichia coli Strain NU14. Genome Announcements. 5. PMID 28473396 DOI: 10.1128/Genomea.00306-17 |
0.413 |
|
| 2017 |
Khetrapal V, Mehershahi KS, Chen SL. Complete Genome Sequence of the Original Escherichia coli Isolate, Strain NCTC86. Genome Announcements. 5. PMID 28428314 DOI: 10.1128/Genomea.00243-17 |
0.393 |
|
| 2017 |
Chee JL, Ravins M, Hanski E, Chen SL. Complete Genome Sequence of Streptococcus pyogenes emm14 JS95, a Necrotizing Fasciitis Strain Isolated in Israel. Genome Announcements. 5. PMID 28302774 DOI: 10.1128/Genomea.00025-17 |
0.375 |
|
| 2016 |
Keogh D, Tay WH, Ho YY, Dale JL, Chen S, Umashankar S, Williams RB, Chen SL, Dunny GM, Kline KA. Enterococcal Metabolite Cues Facilitate Interspecies Niche Modulation and Polymicrobial Infection. Cell Host & Microbe. 20: 493-503. PMID 27736645 DOI: 10.1016/J.Chom.2016.09.004 |
0.308 |
|
| 2016 |
Wu Z, Periaswamy B, Sahin O, Yaeger M, Plummer P, Zhai W, Shen Z, Dai L, Chen SL, Zhang Q. Point mutations in the major outer membrane protein drive hypervirulence of a rapidly expanding clone of Campylobacter jejuni. Proceedings of the National Academy of Sciences of the United States of America. PMID 27601641 DOI: 10.1073/Pnas.1605869113 |
0.394 |
|
| 2016 |
Sović I, Šikić M, Wilm A, Fenlon SN, Chen S, Nagarajan N. Fast and sensitive mapping of nanopore sequencing reads with GraphMap. Nature Communications. 7: 11307. PMID 27079541 DOI: 10.1038/Ncomms11307 |
0.308 |
|
| 2016 |
Zhang H, Susanto TT, Wan Y, Chen SL. Comprehensive mutagenesis of the fimS promoter regulatory switch reveals novel regulation of type 1 pili in uropathogenic Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035967 DOI: 10.1073/Pnas.1522958113 |
0.357 |
|
| 2016 |
Eshaghi M, Mehershahi KS, Chen SL. Brighter Fluorescent Derivatives of UTI89 Utilizing a Monomeric vGFP. Pathogens (Basel, Switzerland). 5. PMID 26742079 DOI: 10.3390/Pathogens5010003 |
0.314 |
|
| 2015 |
Mehershahi KS, Hsu LY, Koh TH, Chen SL. Erratum for Mehershahi et al., Complete Genome Sequence of Streptococcus agalactiae Serotype III, Multilocus Sequence Type 283 Strain SG-M1. Genome Announcements. 3. PMID 26722015 DOI: 10.1128/Genomea.01585-15 |
0.331 |
|
| 2015 |
Mehershahi KS, Hsu LY, Koh TH, Chen SL. Complete Genome Sequence of Streptococcus agalactiae Serotype III, Multilocus Sequence Type 283 Strain SG-M1. Genome Announcements. 3. PMID 26494662 DOI: 10.1128/Genomea.01188-15 |
0.372 |
|
| 2015 |
Do LA, Wilm A, van Doorn HR, Lam HM, Sim S, Sukumaran R, Tran AT, Nguyen BH, Tran TT, Tran QH, Vo QB, Tran Dac NA, Trinh HN, Nguyen TT, Le Binh BT, ... ... Chen S, et al. Direct whole-genome deep-sequencing of human respiratory syncytial virus A and B from Vietnamese children identifies distinct patterns of inter- and intra-host evolution. The Journal of General Virology. PMID 26407694 DOI: 10.1099/Jgv.0.000298 |
0.336 |
|
| 2015 |
Dikshit N, Bist P, Fenlon SN, Pulloor NK, Chua CE, Scidmore MA, Carlyon JA, Tang BL, Chen SL, Sukumaran B. Intracellular Uropathogenic E. coli Exploits Host Rab35 for Iron Acquisition and Survival within Urinary Bladder Cells. Plos Pathogens. 11: e1005083. PMID 26248231 DOI: 10.1371/Journal.Ppat.1005083 |
0.301 |
|
| 2015 |
Greene SE, Hibbing ME, Janetka J, Chen SL, Hultgren SJ. Human Urine Decreases Function and Expression of Type 1 Pili in Uropathogenic Escherichia coli. Mbio. 6. PMID 26126855 DOI: 10.1128/Mbio.00820-15 |
0.306 |
|
| 2015 |
Mehershahi KS, Abraham SN, Chen SL. Complete Genome Sequence of Uropathogenic Escherichia coli Strain CI5. Genome Announcements. 3. PMID 26021932 DOI: 10.1128/Genomea.00558-15 |
0.403 |
|
| 2015 |
Khetrapal V, Mehershahi K, Rafee S, Chen S, Lim CL, Chen SL. A set of powerful negative selection systems for unmodified Enterobacteriaceae. Nucleic Acids Research. PMID 25800749 DOI: 10.1093/Nar/Gkv248 |
0.323 |
|
| 2015 |
Nandi T, Holden MT, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, ... ... Chen SL, et al. Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles. Genome Research. 25: 129-41. PMID 25236617 DOI: 10.1101/Gr.177543.114 |
0.394 |
|
| 2015 |
Hsieh TY, Kao YL, Wang SC, Chen WJ, Chen SL. Adding gentamicin to fluoroquinolone-based antimicrobial prophylaxis reduces transrectal ultrasound-guided prostate biopsy-related infection rate Urological Science. DOI: 10.1016/j.urols.2015.04.008 |
0.422 |
|
| 2013 |
Schwartz DJ, Kalas V, Pinkner JS, Chen SL, Spaulding CN, Dodson KW, Hultgren SJ. Positively selected FimH residues enhance virulence during urinary tract infection by altering FimH conformation. Proceedings of the National Academy of Sciences of the United States of America. 110: 15530-7. PMID 24003161 DOI: 10.1073/Pnas.1315203110 |
0.322 |
|
| 2013 |
Chen SL, Wu M, Henderson JP, Hooton TM, Hibbing ME, Hultgren SJ, Gordon JI. Genomic diversity and fitness of E. coli strains recovered from the intestinal and urinary tracts of women with recurrent urinary tract infection. Science Translational Medicine. 5: 184ra60. PMID 23658245 DOI: 10.1126/Scitranslmed.3005497 |
0.39 |
|
| 2011 |
Schwartz DJ, Chen SL, Hultgren SJ, Seed PC. Population dynamics and niche distribution of uropathogenic Escherichia coli during acute and chronic urinary tract infection. Infection and Immunity. 79: 4250-9. PMID 21807904 DOI: 10.1128/Iai.05339-11 |
0.328 |
|
| 2011 |
Hadjifrangiskou M, Kostakioti M, Chen SL, Henderson JP, Greene SE, Hultgren SJ. A central metabolic circuit controlled by QseC in pathogenic Escherichia coli. Molecular Microbiology. 80: 1516-29. PMID 21542868 DOI: 10.1111/J.1365-2958.2011.07660.X |
0.346 |
|
| 2010 |
Cusumano CK, Hung CS, Chen SL, Hultgren SJ. Virulence plasmid harbored by uropathogenic Escherichia coli functions in acute stages of pathogenesis. Infection and Immunity. 78: 1457-67. PMID 20123719 DOI: 10.1128/Iai.01260-09 |
0.4 |
|
| 2009 |
Chen SL, Hung CS, Pinkner JS, Walker JN, Cusumano CK, Li Z, Bouckaert J, Gordon JI, Hultgren SJ. Positive selection identifies an in vivo role for FimH during urinary tract infection in addition to mannose binding. Proceedings of the National Academy of Sciences of the United States of America. 106: 22439-44. PMID 20018753 DOI: 10.1073/Pnas.0902179106 |
0.34 |
|
| 2009 |
Giannakis M, Bäckhed HK, Chen SL, Faith JJ, Wu M, Guruge JL, Engstrand L, Gordon JI. Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis. The Journal of Biological Chemistry. 284: 30383-94. PMID 19723631 DOI: 10.1074/Jbc.M109.052738 |
0.331 |
|
| 2008 |
Hannan TJ, Mysorekar IU, Chen SL, Walker JN, Jones JM, Pinkner JS, Hultgren SJ, Seed PC. LeuX tRNA-dependent and -independent mechanisms of Escherichia coli pathogenesis in acute cystitis. Molecular Microbiology. 67: 116-28. PMID 18036139 DOI: 10.1111/J.1365-2958.2007.06025.X |
0.344 |
|
| 2006 |
Chen SL, Hung CS, Xu J, Reigstad CS, Magrini V, Sabo A, Blasiar D, Bieri T, Meyer RR, Ozersky P, Armstrong JR, Fulton RS, Latreille JP, Spieth J, Hooton TM, et al. Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proceedings of the National Academy of Sciences of the United States of America. 103: 5977-82. PMID 16585510 DOI: 10.1073/Pnas.0600938103 |
0.42 |
|
| 2004 |
Chen SL, Lee W, Hottes AK, Shapiro L, McAdams HH. Codon usage between genomes is constrained by genome-wide mutational processes. Proceedings of the National Academy of Sciences of the United States of America. 101: 3480-5. PMID 14990797 DOI: 10.1073/Pnas.0307827100 |
0.488 |
|
| 2003 |
Chen SL, Shapiro L. Identification of long intergenic repeat sequences associated with DNA methylation sites in Caulobacter crescentus and other alpha-proteobacteria. Journal of Bacteriology. 185: 4997-5002. PMID 12897020 DOI: 10.1128/Jb.185.16.4997-5002.2003 |
0.451 |
|
| 2002 |
Lee W, Chen SL. Genome-tools: a flexible package for genome sequence analysis. Biotechniques. 33: 1334-41. PMID 12503321 DOI: 10.2144/02336Bc04 |
0.309 |
|
| 2002 |
Laub MT, Chen SL, Shapiro L, McAdams HH. Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle Proceedings of the National Academy of Sciences of the United States of America. 99: 4632-4637. PMID 11930012 DOI: 10.1073/Pnas.062065699 |
0.604 |
|
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