Steven W. Singer, Ph.D. - Publications

Affiliations: 
2001 University of Wisconsin, Madison, Madison, WI 
Area:
organometallic chemistry

136 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Keasling J, Garcia Martin H, Lee TS, Mukhopadhyay A, Singer SW, Sundstrom E. Microbial production of advanced biofuels. Nature Reviews. Microbiology. PMID 34172951 DOI: 10.1038/s41579-021-00577-w  0.01
2021 Gabriel R, Thieme N, Liu Q, Li F, Kohler LT, Harth S, Jecmenica M, Ramamurthy M, Gorman J, Simmons BA, McCluskey K, Baker SE, Tian C, Schuerg T, Singer SW, et al. The F-box protein gene - is a target for reverse engineering enzyme hypersecretion in filamentous fungi. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34168079 DOI: 10.1073/pnas.2025689118  0.01
2021 Gauttam R, Mukhopadhyay A, Simmons BA, Singer SW. Development of dual-inducible duet-expression vectors for tunable gene expression control and CRISPR interference-based gene repression in Pseudomonas putida KT2440. Microbial Biotechnology. PMID 34009716 DOI: 10.1111/1751-7915.13832  0.01
2021 Wu YW, Singer SW. Recovering Individual Genomes from Metagenomes Using MaxBin 2.0. Current Protocols. 1: e128. PMID 33961733 DOI: 10.1002/cpz1.128  0.01
2021 Pham LTM, Deng K, Northen TR, Singer SW, Adams PD, Simmons BA, Sale KL. Experimental and theoretical insights into the effects of pH on catalysis of bond-cleavage by the lignin peroxidase isozyme H8 from Phanerochaete chrysosporium. Biotechnology For Biofuels. 14: 108. PMID 33926536 DOI: 10.1186/s13068-021-01953-7  0.01
2021 Ciobanu D, Clum A, Ahrendt S, Andreopoulos WB, Salamov A, Chan S, Quandt CA, Foster B, Meier-Kolthoff JP, Tang YT, Schwientek P, Benny GL, Smith ME, Bauer D, Deshpande S, ... ... Singer SW, et al. A single-cell genomics pipeline for environmental microbial eukaryotes. Iscience. 24: 102290. PMID 33870123 DOI: 10.1016/j.isci.2021.102290  0.01
2021 Panich J, Fong B, Singer SW. Metabolic Engineering of Cupriavidus necator H16 for Sustainable Biofuels from CO. Trends in Biotechnology. PMID 33518389 DOI: 10.1016/j.tibtech.2021.01.001  0.01
2020 Aulitto M, Tom LM, Ceja-Navarro JA, Simmons BA, Singer SW. Whole-Genome Sequence of Brevibacillus borstelensis SDM, Isolated from a Sorghum-Adapted Microbial Community. Microbiology Resource Announcements. 9. PMID 33239462 DOI: 10.1128/MRA.01046-20  0.01
2020 Lawson C, Martí JM, Radivojevic T, Jonnalagadda SVR, Gentz R, Hillson NJ, Peisert S, Kim J, Simmons BA, Petzold CJ, Singer SW, Mukhopadhyay A, Tanjore D, Dunn J, Martin HG. Machine learning for metabolic engineering: A review. Metabolic Engineering. PMID 33221420 DOI: 10.1016/j.ymben.2020.10.005  0.01
2020 Gabriel R, Prinz J, Jecmenica M, Romero-Vazquez C, Chou P, Harth S, Floerl L, Curran L, Oostlander A, Matz L, Fritsche S, Gorman J, Schuerg T, Fleißner A, Singer SW. Development of genetic tools for the thermophilic filamentous fungus . Biotechnology For Biofuels. 13: 167. PMID 33062053 DOI: 10.1186/s13068-020-01804-x  0.01
2020 Mohamed ET, Werner AZ, Salvachúa D, Singer CA, Szostkiewicz K, Rafael Jiménez-Díaz M, Eng T, Radi MS, Simmons BA, Mukhopadhyay A, Herrgård MJ, Singer SW, Beckham GT, Feist AM. Adaptive laboratory evolution of KT2440 improves -coumaric and ferulic acid catabolism and tolerance. Metabolic Engineering Communications. 11: e00143. PMID 32963959 DOI: 10.1016/J.Mec.2020.E00143  0.01
2020 Gauttam R, Mukhopadhyay A, Singer SW. Construction of a novel dual-inducible duet-expression system for gene (over)expression in Pseudomonas putida. Plasmid. 102514. PMID 32504628 DOI: 10.1016/J.Plasmid.2020.102514  0.01
2020 Park MR, Chen Y, Thompson M, Benites V, Fong B, Petzold C, Baidoo E, Gladden J, Adams P, Keasling J, Simmons BA, Singer SW. The response of Pseudomonas putida to complex aromatic-rich fractions from biomass. Chemsuschem. PMID 32160408 DOI: 10.1002/Cssc.202000268  0.01
2019 Doud DFR, Bowers RM, Schulz F, De Raad M, Deng K, Tarver A, Glasgow E, Vander Meulen K, Fox B, Deutsch S, Yoshikuni Y, Northen T, Hedlund BP, Singer SW, Ivanova N, et al. Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. The Isme Journal. PMID 31754206 DOI: 10.1038/S41396-019-0557-Y  0.01
2019 Barajas JF, Wehrs M, To M, Cruickshanks L, Urban R, McKee A, Gladden J, Goh EB, Brown ME, Pierotti D, Carothers JM, Mukhopadhyay A, Keasling JD, Fortman JL, Singer SW, et al. Isolation and Characterization of Bacterial Cellulase Producers for Biomass Deconstruction: A Microbiology Laboratory Course. Journal of Microbiology & Biology Education. 20. PMID 31388393 DOI: 10.1128/Jmbe.V20I2.1723  0.01
2019 Higgins DA, Gladden J, Kimbrel J, Simmons BA, Singer SW, Thelen MP. Guanidine-riboswitch-regulated efflux transporters protect bacteria against ionic liquid toxicity. Journal of Bacteriology. PMID 30988034 DOI: 10.1128/Jb.00069-19  0.01
2019 Dong J, Chen Y, Benites VT, Baidoo EEK, Petzold CJ, Beller HR, Eudes A, Scheller HV, Adams PD, Mukhopadhyay A, Simmons BA, Singer SW. Methyl ketone production by Pseudomonas putida is enhanced by plant-derived amino acids. Biotechnology and Bioengineering. PMID 30982958 DOI: 10.1002/Bit.26995  0.01
2019 Kothari A, Wu YW, Chandonia JM, Charrier M, Rajeev L, Rocha AM, Joyner DC, Hazen TC, Singer SW, Mukhopadhyay A. Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes. Mbio. 10. PMID 30808697 DOI: 10.1128/Mbio.02899-18  0.01
2018 Ruegg TL, Pereira JH, Chen JC, DeGiovanni A, Novichkov P, Mutalik VK, Tomaleri GP, Singer SW, Hillson NJ, Simmons BA, Adams PD, Thelen MP. Author Correction: Jungle Express is a versatile repressor system for tight transcriptional control. Nature Communications. 9: 4596. PMID 30375402 DOI: 10.1038/S41467-018-07111-2  0.01
2018 Ruegg TL, Pereira JH, Chen JC, DeGiovanni A, Novichkov P, Mutalik VK, Tomaleri GP, Singer SW, Hillson NJ, Simmons BA, Adams PD, Thelen MP. Jungle Express is a versatile repressor system for tight transcriptional control. Nature Communications. 9: 3617. PMID 30190458 DOI: 10.1038/S41467-018-05857-3  0.01
2018 Higgins DA, Young MK, Tremaine M, Sardi M, Fletcher JM, Agnew M, Liu L, Dickinson Q, Peris D, Wrobel RL, Hittinger CT, Gasch AP, Singer SW, Simmons BA, Landick R, et al. Natural Variation in the Multidrug Efflux Pump Underlies Ionic Liquid Tolerance in Yeast. Genetics. PMID 30045857 DOI: 10.1534/Genetics.118.301161  0.01
2018 Kimbrel JA, Ballor N, Wu YW, David MM, Hazen TC, Simmons BA, Singer SW, Jansson JK. Microbial Community Structure and Functional Potential Along a Hypersaline Gradient. Frontiers in Microbiology. 9: 1492. PMID 30042744 DOI: 10.3389/Fmicb.2018.01492  0.01
2018 Martino E, Morin E, Grelet GA, Kuo A, Kohler A, Daghino S, Barry KW, Cichocki N, Clum A, Dockter RB, Hainaut M, Kuo RC, LaButti K, Lindahl BD, Lindquist EA, ... ... Singer SW, et al. Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists. The New Phytologist. PMID 29315638 DOI: 10.1111/Nph.14974  0.01
2017 Amaike Campen S, Lynn J, Sibert SJ, Srikrishnan S, Phatale P, Feldman T, Guenther JM, Hiras J, Tran YTA, Singer SW, Adams PD, Sale KL, Simmons BA, Baker SE, Magnuson JK, et al. Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger. Plos One. 12: e0189604. PMID 29281693 DOI: 10.1371/Journal.Pone.0189604  0.01
2017 Schuerg T, Prahl JP, Gabriel R, Harth S, Tachea F, Chen CS, Miller M, Masson F, He Q, Brown S, Mirshiaghi M, Liang L, Tom LM, Tanjore D, Sun N, ... ... Singer SW, et al. Xylose induces cellulase production in Thermoascus aurantiacus. Biotechnology For Biofuels. 10: 271. PMID 29167701 DOI: 10.1186/s13068-017-0965-z  0.01
2017 Mohamed ET, Wang S, Lennen RM, Herrgård MJ, Simmons BA, Singer SW, Feist AM. Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution. Microbial Cell Factories. 16: 204. PMID 29145855 DOI: 10.1186/S12934-017-0819-1  0.01
2017 Kolinko S, Wu YW, Tachea F, Denzel E, Hiras J, Gabriel R, Bäcker N, Chan LJG, Eichorst SA, Frey D, Chen Q, Azadi P, Adams PD, Pray TR, Tanjore D, ... ... Singer SW, et al. A bacterial pioneer produces cellulase complexes that persist through community succession. Nature Microbiology. PMID 29109478 DOI: 10.1038/S41564-017-0052-Z  0.01
2017 Yaegashi J, Kirby J, Ito M, Sun J, Dutta T, Mirsiaghi M, Sundstrom ER, Rodriguez A, Baidoo E, Tanjore D, Pray T, Sale K, Singh S, Keasling JD, Simmons BA, ... Singer SW, et al. Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts. Biotechnology For Biofuels. 10: 241. PMID 29075325 DOI: 10.1186/S13068-017-0927-5  0.01
2017 Sitepu IR, Garay LA, Enriquez L, Fry R, Butler JH, Lopez JM, Kanti A, Faulina SA, Nugroho AJ, Simmons BA, Singer SW, Simmons CW, Boundy-Mills K. 1-Ethyl-3-methylimidazolium tolerance and intracellular lipid accumulation of 38 oleaginous yeast species. Applied Microbiology and Biotechnology. PMID 29051987 DOI: 10.1007/s00253-017-8506-z  0.01
2017 Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, ... ... Singer SW, et al. Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software. Nature Methods. PMID 28967888 DOI: 10.1038/Nmeth.4458  0.01
2017 Jiménez DJ, Dini-Andreote F, DeAngelis KM, Singer SW, Salles JF, van Elsas JD. Ecological Insights into the Dynamics of Plant Biomass-Degrading Microbial Consortia. Trends in Microbiology. PMID 28648267 DOI: 10.1016/J.Tim.2017.05.012  0.01
2017 Metreveli E, Kachlishvili E, Singer SW, Elisashvili V. Alteration of white-rot basidiomycetes cellulase and xylanase activities in the submerged co-cultivation and optimization of enzyme production by Irpex lacteus and Schizophyllum commune. Bioresource Technology. 241: 652-660. PMID 28609753 DOI: 10.1016/j.biortech.2017.05.148  0.01
2016 Yu C, Simmons BA, Singer SW, Thelen MP, VanderGheynst JS. Ionic liquid-tolerant microorganisms and microbial communities for lignocellulose conversion to bioproducts. Applied Microbiology and Biotechnology. PMID 27838839 DOI: 10.1007/S00253-016-7955-0  0.01
2016 Kothari A, Charrier M, Wu YW, Malfatti S, Zhou CE, Singer SW, Dugan L, Mukhopadhyay A. Transcriptomic analysis of the highly efficient oil-degrading bacterium Acinetobacter venetianus RAG-1 reveals genes important in dodecane uptake and utilization. Fems Microbiology Letters. PMID 27664055 DOI: 10.1093/Femsle/Fnw224  0.01
2016 Hiras J, Wu YW, Deng K, Nicora CD, Aldrich JT, Frey D, Kolinko S, Robinson EW, Jacobs JM, Adams PD, Northen TR, Simmons BA, Singer SW. Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis. Mbio. 7. PMID 27555310 DOI: 10.1128/Mbio.01106-16  1
2016 Pace S, Ceballos SJ, Harrold D, Stannard W, Simmons BA, Singer SW, Thelen MP, VanderGheynst JS. Enrichment of microbial communities tolerant to the ionic liquids tetrabutylphosphonium chloride and tributylethylphosphonium diethylphosphate. Applied Microbiology and Biotechnology. PMID 27102129 DOI: 10.1007/S00253-016-7525-5  1
2016 Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev IV, Singer SW, et al. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology. 7: 238. PMID 26973616 DOI: 10.3389/Fmicb.2016.00238  1
2016 Simmons CW, Higgins B, Staley S, Joh LD, Simmons BA, Singer SW, Stapleton JJ, VanderGheynst JS. The role of organic matter amendment level on soil heating, organic acid accumulation, and development of bacterial communities in solarized soil Applied Soil Ecology. 106: 37-46. DOI: 10.1016/J.Apsoil.2016.04.018  1
2015 Wu YW, Simmons BA, Singer SW. MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets. Bioinformatics (Oxford, England). PMID 26515820 DOI: 10.1093/bioinformatics/btv638  1
2015 Merkley ED, Wrighton KC, Castelle CJ, Anderson BJ, Wilkins MJ, Shah V, Arbour T, Brown JN, Singer SW, Smith RD, Lipton MS. Changes in protein expression across laboratory and field experiments in Geobacter bemidjiensis. Journal of Proteome Research. 14: 1361-75. PMID 25496566 DOI: 10.1021/Pr500983V  1
2015 Woebken D, Burow LC, Behnam F, Mayali X, Schintlmeister A, Fleming ED, Prufert-Bebout L, Singer SW, Cortés AL, Hoehler TM, Pett-Ridge J, Spormann AM, Wagner M, Weber PK, Bebout BM. Revisiting N₂ fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach. The Isme Journal. 9: 485-96. PMID 25303712 DOI: 10.1038/Ismej.2014.144  1
2015 Hiras J, Wu YW, Eichorst SA, Simmons BA, Singer SW. Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage Isme Journal. DOI: 10.1038/ismej.2015.158  1
2015 Wu YW, Joshua C, Eichorst SA, Gladden JM, Simmons BA, Singer SW. Genomic Analysis of Xylose Metabolism in Members of the Deinoccocus-Thermus Phylum from Thermophilic Biomass-Deconstructing Bacterial Consortia Bioenergy Research. DOI: 10.1007/S12155-015-9600-7  1
2014 Simmons CW, Reddy AP, D'haeseleer P, Khudyakov J, Billis K, Pati A, Simmons BA, Singer SW, Thelen MP, VanderGheynst JS. Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw. Biotechnology For Biofuels. 7: 495. PMID 25648696 DOI: 10.1186/S13068-014-0180-0  1
2014 Sitepu IR, Shi S, Simmons BA, Singer SW, Boundy-Mills K, Simmons CW. Yeast tolerance to the ionic liquid 1-ethyl-3-methylimidazolium acetate. Fems Yeast Research. 14: 1286-94. PMID 25348480 DOI: 10.1111/1567-1364.12224  1
2014 Eichorst SA, Joshua C, Sathitsuksanoh N, Singh S, Simmons BA, Singer SW. Substrate-Specific Development of Thermophilic Bacterial Consortia by Using Chemically Pretreated Switchgrass. Applied and Environmental Microbiology. 80: 7423-32. PMID 25261509 DOI: 10.1128/Aem.02795-14  0.01
2014 Wu YW, Tang YH, Tringe SG, Simmons BA, Singer SW. MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm. Microbiome. 2: 26. PMID 25136443 DOI: 10.1186/2049-2618-2-26  1
2014 Simmons CW, Reddy AP, Simmons BA, Singer SW, VanderGheynst JS. Effect of inoculum source on the enrichment of microbial communities on two lignocellulosic bioenergy crops under thermophilic and high-solids conditions. Journal of Applied Microbiology. 117: 1025-34. PMID 25066414 DOI: 10.1111/Jam.12609  1
2014 Burow LC, Woebken D, Marshall IP, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Bebout BM, Weber PK, Hoehler TM. Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community. Geobiology. 12: 221-30. PMID 24730641 DOI: 10.1111/Gbi.12080  1
2014 Ruegg TL, Kim EM, Simmons BA, Keasling JD, Singer SW, Lee TS, Thelen MP. An auto-inducible mechanism for ionic liquid resistance in microbial biofuel production. Nature Communications. 5: 3490. PMID 24667370 DOI: 10.1038/Ncomms4490  1
2014 Gladden JM, Park JI, Bergmann J, Reyes-Ortiz V, D'haeseleer P, Quirino BF, Sale KL, Simmons BA, Singer SW. Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community. Biotechnology For Biofuels. 7: 15. PMID 24479406 DOI: 10.1186/1754-6834-7-15  1
2014 Simmons CW, Reddy AP, Vandergheynst JS, Simmons BA, Singer SW. Bacillus coagulans tolerance to 1-ethyl-3-methylimidazolium-based ionic liquids in aqueous and solid-state thermophilic culture. Biotechnology Progress. 30: 311-6. PMID 24376258 DOI: 10.1002/Btpr.1859  1
2014 Simmons CW, Claypool JT, Marshall MN, Jabusch LK, Reddy AP, Simmons BA, Singer SW, Stapleton JJ, VanderGheynst JS. Characterization of bacterial communities in solarized soil amended with lignocellulosic organic matter Applied Soil Ecology. 73: 97-104. DOI: 10.1016/J.Apsoil.2013.08.014  1
2013 Cheng X, Hiras J, Deng K, Bowen B, Simmons BA, Adams PD, Singer SW, Northen TR. High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production. Frontiers in Microbiology. 4: 365. PMID 24367356 DOI: 10.3389/Fmicb.2013.00365  1
2013 Bi C, Su P, Müller J, Yeh YC, Chhabra SR, Beller HR, Singer SW, Hillson NJ. Development of a broad-host synthetic biology toolbox for Ralstonia eutropha and its application to engineering hydrocarbon biofuel production. Microbial Cell Factories. 12: 107. PMID 24219429 DOI: 10.1186/1475-2859-12-107  1
2013 Reddy AP, Simmons CW, D'haeseleer P, Khudyakov J, Burd H, Hadi M, Simmons BA, Singer SW, Thelen MP, Vandergheynst JS. Discovery of microorganisms and enzymes involved in high-solids decomposition of rice straw using metagenomic analyses. Plos One. 8: e77985. PMID 24205054 DOI: 10.1371/Journal.Pone.0077985  1
2013 Castelle CJ, Hug LA, Wrighton KC, Thomas BC, Williams KH, Wu D, Tringe SG, Singer SW, Eisen JA, Banfield JF. Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nature Communications. 4: 2120. PMID 23979677 DOI: 10.1038/Ncomms3120  1
2013 Everroad RC, Woebken D, Singer SW, Burow LC, Kyrpides N, Woyke T, Goodwin L, Detweiler A, Prufert-Bebout L, Pett-Ridge J. Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1. Genome Announcements. 1. PMID 23908279 DOI: 10.1128/Genomea.00527-13  0.01
2013 D'haeseleer P, Gladden JM, Allgaier M, Chain PS, Tringe SG, Malfatti SA, Aldrich JT, Nicora CD, Robinson EW, PaÅ¡a-Tolić L, Hugenholtz P, Simmons BA, Singer SW. Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass. Plos One. 8: e68465. PMID 23894306 DOI: 10.1371/Journal.Pone.0068465  1
2013 Eichorst SA, Varanasi P, Stavila V, Zemla M, Auer M, Singh S, Simmons BA, Singer SW. Community dynamics of cellulose-adapted thermophilic bacterial consortia. Environmental Microbiology. 15: 2573-87. PMID 23763762 DOI: 10.1111/1462-2920.12159  1
2013 Müller J, MacEachran D, Burd H, Sathitsuksanoh N, Bi C, Yeh YC, Lee TS, Hillson NJ, Chhabra SR, Singer SW, Beller HR. Engineering of Ralstonia eutropha H16 for autotrophic and heterotrophic production of methyl ketones. Applied and Environmental Microbiology. 79: 4433-9. PMID 23686271 DOI: 10.1128/Aem.00973-13  1
2013 Yeh YC, Müller J, Bi C, Hillson NJ, Beller HR, Chhabra SR, Singer SW. Functionalizing bacterial cell surfaces with a phage protein. Chemical Communications (Cambridge, England). 49: 910-2. PMID 23247551 DOI: 10.1039/C2Cc37883C  1
2013 Burow LC, Woebken D, Marshall IP, Lindquist EA, Bebout BM, Prufert-Bebout L, Hoehler TM, Tringe SG, Pett-Ridge J, Weber PK, Spormann AM, Singer SW. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics. The Isme Journal. 7: 817-29. PMID 23190731 DOI: 10.1038/Ismej.2012.150  1
2013 Shi J, Gladden JM, Sathitsuksanoh N, Kambam P, Sandoval L, Mitra D, Zhang S, George A, Singer SW, Simmons BA, Singh S. One-pot ionic liquid pretreatment and saccharification of switchgrass Green Chemistry. 15: 2579-2589. DOI: 10.1039/C3Gc40545A  1
2012 Reddy AP, Simmons CW, Claypool J, Jabusch L, Burd H, Hadi MZ, Simmons BA, Singer SW, VanderGheynst JS. Thermophilic enrichment of microbial communities in the presence of the ionic liquid 1-ethyl-3-methylimidazolium acetate. Journal of Applied Microbiology. 113: 1362-70. PMID 22958071 DOI: 10.1111/Jam.12002  1
2012 McClendon SD, Batth T, Petzold CJ, Adams PD, Simmons BA, Singer SW. Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions. Biotechnology For Biofuels. 5: 54. PMID 22839529 DOI: 10.1186/1754-6834-5-54  0.01
2012 Park JI, Steen EJ, Burd H, Evans SS, Redding-Johnson AM, Batth T, Benke PI, D'haeseleer P, Sun N, Sale KL, Keasling JD, Lee TS, Petzold CJ, Mukhopadhyay A, Singer SW, et al. A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels. Plos One. 7: e37010. PMID 22649505 DOI: 10.1371/Journal.Pone.0037010  1
2012 Singer SW. Targeted isolation of proteins from natural microbial communities living in an extreme environment. Methods in Molecular Biology (Clifton, N.J.). 881: 63-72. PMID 22639210 DOI: 10.1007/978-1-61779-827-6_3  0.08
2012 Woebken D, Burow LC, Prufert-Bebout L, Bebout BM, Hoehler TM, Pett-Ridge J, Spormann AM, Weber PK, Singer SW. Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis. The Isme Journal. 6: 1427-39. PMID 22237543 DOI: 10.1038/Ismej.2011.200  1
2012 Wheeler KE, Erickson BK, Mueller R, Singer SW, Verberkmoes NC, Hwang M, Thelen MP, Hettich RL. Metal affinity enrichment increases the range and depth of proteome identification for extracellular microbial proteins. Journal of Proteome Research. 11: 861-70. PMID 22191549 DOI: 10.1021/Pr200693U  1
2012 Gladden JM, Eichorst SA, Hazen TC, Simmons BA, Singer SW. Substrate perturbation alters the glycoside hydrolase activities and community composition of switchgrass-adapted bacterial consortia. Biotechnology and Bioengineering. 109: 1140-5. PMID 22125273 DOI: 10.1002/Bit.24388  1
2012 Burow LC, Woebken D, Bebout BM, McMurdie PJ, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Weber PK, Hoehler TM. Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay. The Isme Journal. 6: 863-74. PMID 22011721 DOI: 10.1038/Ismej.2011.142  1
2012 Singer SW, Beller HR, Chhabra S, Chang CJ, Adler J. Microbial ElectroCatalytic (MEC) biofuel production Advanced Biofuels and Bioproducts. 1091-1099. DOI: 10.1007/978-1-4614-3348-4_40  0.01
2011 Gladden JM, Allgaier M, Miller CS, Hazen TC, VanderGheynst JS, Hugenholtz P, Simmons BA, Singer SW. Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass. Applied and Environmental Microbiology. 77: 5804-12. PMID 21724886 DOI: 10.1128/Aem.00032-11  1
2011 Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biology. 12: R44. PMID 21595876 DOI: 10.1186/Gb-2011-12-5-R44  1
2011 Reddy AP, Allgaier M, Singer SW, Hazen TC, Simmons BA, Hugenholtz P, VanderGheynst JS. Bioenergy feedstock-specific enrichment of microbial populations during high-solids thermophilic deconstruction. Biotechnology and Bioengineering. 108: 2088-98. PMID 21520015 DOI: 10.1002/Bit.23176  1
2011 Singer SW, Reddy AP, Gladden JM, Guo H, Hazen TC, Simmons BA, VanderGheynst JS. Enrichment, isolation and characterization of fungi tolerant to 1-ethyl-3-methylimidazolium acetate. Journal of Applied Microbiology. 110: 1023-31. PMID 21276149 DOI: 10.1111/J.1365-2672.2011.04959.X  1
2011 Reindl W, Deng K, Gladden JM, Cheng G, Wong A, Singer SW, Singh S, Lee JC, Yao CH, Hazen TC, Singh AK, Simmons BA, Adams PD, Northen TR. Colloid-based multiplexed screening for plant biomass-degrading glycoside hydrolase activities in microbial communities Energy and Environmental Science. 4: 2884-2891. DOI: 10.1039/C1Ee01112J  1
2010 Casey CP, Johnson JB, Jiao X, Beetner SE, Singer SW. Chain mechanism for exchange of D2 with a ruthenium hydride. Chemical Communications (Cambridge, England). 46: 7915-7. PMID 20856982 DOI: 10.1039/C0Cc02875D  1
2010 Singer SW, Erickson BK, VerBerkmoes NC, Hwang M, Shah MB, Hettich RL, Banfield JF, Thelen MP. Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities. The Isme Journal. 4: 1398-409. PMID 20485387 DOI: 10.1038/Ismej.2010.64  1
2010 Erickson BK, Mueller RS, VerBerkmoes NC, Shah M, Singer SW, Thelen MP, Banfield JF, Hettich RL. Computational prediction and experimental validation of signal peptide cleavages in the extracellular proteome of a natural microbial community. Journal of Proteome Research. 9: 2148-59. PMID 20218729 DOI: 10.1021/Pr900877A  1
2010 Wheeler KE, Zemla A, Jiao Y, Goltsman DSA, Singer SW, Banfield JF, Thelen MP. Functional insights from computational modeling of orphan proteins expressed in a microbial community Journal of Proteomics and Bioinformatics. 3: 266-274. DOI: 10.4172/Jpb.1000150  1
2010 DeAngelis KM, Gladden JM, Allgaier M, D'haeseleer P, Fortney JL, Reddy A, Hugenholtz P, Singer SW, Vander Gheynst JS, Silver WL, Simmons BA, Hazen TC. Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communities Bioenergy Research. 3: 146-158. DOI: 10.1007/S12155-010-9089-Z  1
2010 Singer SW, Gladden JM, D'Haeseleer P, Allgaier M, Chivian DC, Hazen TC, Vandergheynst JS, Hugenholtz P, Simmons BA. Targeted discovery of enzymes from enriched microbial consortia for high temperature saccharification of ionic-liquid pre-treated biomass 10aiche - 2010 Aiche Annual Meeting, Conference Proceedings 0.01
2009 Goltsman DS, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS, Dick GJ, Sun CL, Wheeler KE, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, et al. Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms. Applied and Environmental Microbiology. 75: 4599-615. PMID 19429552 DOI: 10.1128/Aem.02943-08  1
2008 Singer SW, Chan CS, Zemla A, VerBerkmoes NC, Hwang M, Hettich RL, Banfield JF, Thelen MP. Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community. Applied and Environmental Microbiology. 74: 4454-62. PMID 18469132 DOI: 10.1128/Aem.02799-07  1
2008 Jeans C, Singer SW, Chan CS, Verberkmoes NC, Shah M, Hettich RL, Banfield JF, Thelen MP. Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community. The Isme Journal. 2: 542-50. PMID 18463612 DOI: 10.1038/Ismej.2008.17  1
2008 Casey CP, Johnson JB, Singer SW, Cui Q. Hydrogen elimination from a hydroxycyclopentadienyl ruthenium(II) hydride: Study of hydrogen activation in a ligand-metal bifunctional hydrogenation catalyst (Journal of the American Chemical Society (2005) 127, (3100-3109)) Journal of the American Chemical Society. 130: 1110. DOI: 10.1021/Ja710851Z  1
2006 Singer SW, Hirst MB, Ludden PW. CO-dependent H2 evolution by Rhodospirillum rubrum: role of CODH:CooF complex. Biochimica Et Biophysica Acta. 1757: 1582-91. PMID 17123462 DOI: 10.1016/J.Bbabio.2006.10.003  1
2006 Baker LM, Peery MZ, Burkett EE, Singer SW, Suddjian DL, Beissinger SR. Nesting habitat characteristics of the marbled murrelet in central California redwood forests Journal of Wildlife Management. 70: 939-946. DOI: 10.2193/0022-541X(2006)70[939:NHCOTM]2.0.CO;2  1
2005 Jeon WB, Singer SW, Ludden PW, Rubio LM. New insights into the mechanism of nickel insertion into carbon monoxide dehydrogenase: analysis of Rhodospirillum rubrum carbon monoxide dehydrogenase variants with substituted ligands to the [Fe3S4] portion of the active-site C-cluster. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 10: 903-12. PMID 16283394 DOI: 10.1007/S00775-005-0043-Z  1
2005 Casey CP, Johnson JB, Singer SW, Cui Q. Hydrogen elimination from a hydroxycyclopentadienyl ruthenium(II) hydride: study of hydrogen activation in a ligand-metal bifunctional hydrogenation catalyst. Journal of the American Chemical Society. 127: 3100-9. PMID 15740149 DOI: 10.1021/Ja043460R  1
2004 Rubio LM, Singer SW, Ludden PW. Purification and characterization of NafY (apodinitrogenase gamma subunit) from Azotobacter vinelandii. The Journal of Biological Chemistry. 279: 19739-46. PMID 14996831 DOI: 10.1074/Jbc.M400965200  1
2003 Carter HR, Lee VA, Page GW, Parker MW, Ford RG, Swartzman G, Kress SW, Siskin BR, Singer SW, Fry DM. The 1986 Apex Houston oil spill in central California: Seabird injury assessments and litigation process Marine Ornithology. 31: 9-19.  1
2002 Casey CP, Vos TE, Singer SW, Guzei IA. Protonated aminocyclopentadienyl ruthenium hydride reduction of benzaldehyde and the conversion of the resulting ruthenium triflate to a ruthenium hydride with H2 and base Organometallics. 21: 5038-5046. DOI: 10.1021/Om020507D  1
2001 Casey CP, Singer SW, Powell DR, Hayashi RK, Kavana M. Hydrogen transfer to carbonyls and imines from a hydroxycyclopentadienyl ruthenium hydride: evidence for concerted hydride and proton transfer. Journal of the American Chemical Society. 123: 1090-100. PMID 11456662 DOI: 10.1021/Ja002177Z  1
2001 Casey CP, Singer SW, Powell DR. The role of a hydroxycyclopentadienyl ruthenium dicarbonyl formate in formic acid reductions of carbonyl compounds catalyzed by Shvo's diruthenium catalyst Canadian Journal of Chemistry. 79: 1002-1011. DOI: 10.1139/V00-201  1
2000 Petrozzo RA, Singer SW. Cinema projection distortion Smpte Journal. 109: 648-651.  0.01
1995 Singer SW, Meinert CL. Format-independent data collection forms. Controlled Clinical Trials. 16: 363-76. PMID 8720015 DOI: 10.1016/S0197-2456(95)00016-X  1
1995 McBride R, Singer SW. Interim reports, participant closeout, and study archives. Controlled Clinical Trials. 16: 137S-167S. PMID 7789141 DOI: 10.1016/0197-2456(94)00096-L  0.01
1995 McBride R, Singer SW. Introduction Controlled Clinical Trials. 16: 1-3.  0.01
1991 Raj P, Singer SW. Computational aerodynamics in aircraft design: Challenges and opportunities for Euler/Navier-Stokes methods Sae Technical Papers. DOI: 10.4271/911990  0.01
1991 Raj P, Singer SW. Computational aerodynamics in aircraft design. Challenges and opportunities for Euler/Navier-Stokes methods Proceedings - Society of Automotive Engineers. 227-239.  0.01
1990 Singer SW, Mattson EA. Internal and external flow simulation using multizone Euler/Navier-stokes aerodynamic methods Sae Technical Papers. DOI: 10.4271/901856  1
1989 Hawkins BS, Singer SW. Perusing the literature. Controlled Clinical Trials. 10: 211. PMID 2666028  0.01
1986 Hawkins BS, Singer SW. Design, development, and implementation of a data processing system for multiple controlled trials and epidemiologic studies. Controlled Clinical Trials. 7: 89-117. PMID 3755669 DOI: 10.1016/0197-2456(86)90027-9  0.01
1982 Singer SW, Hawkins BS, Newhouse MM. Generalized data management systems: A report on the state of the art Controlled Clinical Trials. 3: 136.  0.01
1858 Singer SW. Etymology of "cockshut" and "cockshoot." Notes and Queries. 400-401. DOI: 10.1093/nq/s2-VI.150.400-b  0.04
1858 Singer SW. Shakspeariana Notes and Queries. 289-290. DOI: 10.1093/nq/s2-V.119.289  0.08
1858 Singer SW. Bacon's essays Notes and Queries. 238-240. DOI: 10.1093/nq/s2-V.116.238-b  0.04
1858 Singer SW. Shakspeariana: On a passage in "troilus and cressida." Notes and Queries. 201-202. DOI: 10.1093/nq/s2-V.115.201-b  0.04
1857 Singer SW. Error in southey's common-place book.-francisco de Rioja Notes and Queries. 81. DOI: 10.1093/nq/s2-III.57.81-a  0.12
1856 Singer SW. Bacon's "reflections or death." Notes and Queries. 173. DOI: 10.1093/nq/s2-I.9.173-a  0.04
1856 Singer SW. The will of Paul Colomiés, the learned librarian of Archbishop Sancroft Notes and Queries. 5-6. DOI: 10.1093/nq/s2-I.1.5  0.04
1855 Singer SW. "A sleeveless errand" Notes and Queries. 520-521. DOI: 10.1093/nq/s1-XII.322.520-h  0.08
1855 Singer SW. "Did Edmund Burke write Sir Joshua Beynolds's discourses?" Notes and Queries. 472-473. DOI: 10.1093/nq/s1-XII.320.472-b  0.08
1855 Singer SW. Photographic portraits of Shakspeare Notes and Queries. 339. DOI: 10.1093/nq/s1-XII.314.339-a  0.04
1855 Singer SW. "A sleeveless errand." Notes and Queries. 58. DOI: 10.1093/nq/s1-XII.300.58  0.04
1855 Singer SW. Back Notes and Queries. 11. DOI: 10.1093/nq/s1-XII.297.11  0.08
1855 Singer SW. On a passage in Shakspeare's "king Henry VIII.," act IV. sc. 2 Notes and Queries. 438-439. DOI: 10.1093/nq/s1-XI.293.438  0.04
1855 Singer SW. Franklin's parable and taylor's "liberty of prophecying." Notes and Queries. 344-345. DOI: 10.1093/nq/s1-XI.288.344-f  0.12
1855 Singer SW. The "dictionarium anglicum" used by Skinner Notes and Queries. 167-169. DOI: 10.1093/nq/s1-XI.279.167-f  0.08
1854 Singer SW. Blanco White's Sonnet Notes and Queries. 469-470. DOI: 10.1093/nq/s1-IX.238.469-d  0.01
1854 Singer SW. Dr. Whichcote and Dorothy Jordan Notes and Queries. 383-384. DOI: 10.1093/nq/s1-IX.234.383-b  0.08
1853 Singer SW. Milton's widow Notes and Queries. 471. DOI: 10.1093/nq/s1-VIII.211.471-a  0.01
1853 Singer SW. Portraits of hobbes and letters of hollar Notes and Queries. 368-369. DOI: 10.1093/nq/s1-VIII.207.368-a  0.12
1853 Singer SW. Milton and Malatesti Notes and Queries. 295-296. DOI: 10.1093/nq/s1-VIII.204.295-b  0.08
1853 Singer SW. Its Notes and Queries. 254-255. DOI: 10.1093/nq/s1-VIII.202.254-e  0.04
1853 Singer SW. On a celebrated passage in "Romeo and Juliet," act III. SC. 2 Notes and Queries. 3-4. DOI: 10.1093/nq/s1-VIII.192.3  0.04
1853 Singer SW. Shakspeare's use of the idiom "no had" and "no hath not." Notes and Queries. 593. DOI: 10.1093/nq/s1-VII.190.593-a  0.2
1853 Singer SW. Shakspeare correspondence: The passage in king henry VIII., act III. sc. 1. (vol. vii., pp. 5. 111. 183. 494.) Notes and Queries. 449-450. DOI: 10.1093/nq/s1-VII.184.449-a  0.08
1853 Singer SW. "Anywhen" and "seldom-when:" unobserved instances of shakspeare's use of the latter Notes and Queries. 335. DOI: 10.1093/nq/s1-VII.179.335  0.01
1853 Singer SW. The passage in King Henry VIII., act III. sc. 2 Notes and Queries. 183. DOI: 10.1093/nq/s1-VII.173.183-c  0.04
1853 Singer SW. On a passage in "King Henry VIII.," act III. sc. 2. Notes and Queries. 5-6. DOI: 10.1093/nq/s1-VII.166.5-b  0.04
1852 Singer SW. Shakspeare emendations Notes and Queries. 584. DOI: 10.1093/nq/s1-VI.164.584  0.04
1852 Singer SW. "Whoe'er has travell'd life's dull round," etc. Notes and Queries. 464-465. DOI: 10.1093/nq/s1-VI.159.464-c  0.01
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