Qiang Cui, Ph.D. - Publications

Affiliations: 
Chemistry University of Wisconsin, Madison, Madison, WI 
Area:
computational chemistry and biophysics
Website:
http://www.chem.wisc.edu/users/cui

357 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhang S, Nie L, Zhao W, Cui Q, Wang J, Duan Y, Ge C. Metabolomic analysis of the occurrence of bitter fruits on grafted oriental melon plants. Plos One. 14: e0223707. PMID 31600335 DOI: 10.1371/journal.pone.0223707  0.76
2019 Lu X, Duchimaza-Heredia J, Cui Q. Analysis of Density Functional Tight Binding (DFTB) with Natural Bonding Orbitals (NBOs). The Journal of Physical Chemistry. A. PMID 31373822 DOI: 10.1021/acs.jpca.9b05072  0.4
2019 Chen H, Pan J, Gandhi DM, Dockendorff C, Cui Q, Chanda B, Henzler-Wildman KA. NMR Structural Analysis of Isolated Shaker Voltage-Sensing Domain in LPPG Micelles. Biophysical Journal. PMID 31301804 DOI: 10.1016/j.bpj.2019.06.020  0.48
2019 Chen X, Li X, Liang H, Wei L, Cui Q, Yao M, Wu X. A new mutL homolog 1 c.1896+5G>A germline mutation detected in a Lynch syndrome-associated lung and gastric double primary cancer patient. Molecular Genetics & Genomic Medicine. e787. PMID 31207149 DOI: 10.1002/mgg3.787  0.76
2019 Zhao H, Chen J, Chen J, Kong X, Zhu H, Zhang Y, Dong H, Wang J, Ren Q, Wang Q, Chen S, Deng Z, Chen Z, Cui Q, Zheng J, et al. miR-192/215-5p act as tumor suppressors and link Crohn's disease and colorectal cancer by targeting common metabolic pathways: An integrated informatics analysis and experimental study. Journal of Cellular Physiology. PMID 31020657 DOI: 10.1002/jcp.28709  0.76
2019 Li R, Wang X, Liu J, Cui Q, Wang X, Chen S, Lianzhou J. Relationship between Molecular Flexibility and Emulsifying Properties of Soy Protein Isolate-Glucose Conjugates. Journal of Agricultural and Food Chemistry. PMID 30883123 DOI: 10.1021/acs.jafc.8b06713  0.76
2019 Wang X, Chen S, Cui Q, Li R, Wang X, Jiang L. Effect of pH on Freeze-thaw Stability of Glycated Soy Protein Isolate. Journal of Oleo Science. PMID 30760674 DOI: 10.5650/jos.ess18227  0.76
2019 Hu X, Cui Q, Wang M. A Novel CAMKMT Exon3-ALK Exon20 Fusion Variant was Identified in a Primary Pulmonary Mucinous Adenocarcinoma. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. 14: e11-e12. PMID 30579547 DOI: 10.1016/j.jtho.2018.09.020  0.64
2018 Luo GZ, Hao Z, Luo L, Shen M, Sparvoli D, Zheng Y, Zhang Z, Weng X, Chen K, Cui Q, Turkewitz AP, He C. N-methyldeoxyadenosine directs nucleosome positioning in Tetrahymena DNA. Genome Biology. 19: 200. PMID 30454035 DOI: 10.1186/s13059-018-1573-3  0.6
2018 Zhu L, Cui Q, Xiao H, Liao X, Chen X. Gating and inactivation of mechanosensitive channels of small conductance: A continuum mechanics study. Journal of the Mechanical Behavior of Biomedical Materials. 90: 502-514. PMID 30453114 DOI: 10.1016/j.jmbbm.2018.10.040  0.72
2018 Zhu H, Lu J, Zhao H, Chen Z, Cui Q, Lin Z, Wang X, Wang J, Dong H, Wang S, Tan J. Functional Long Noncoding RNAs (lncRNAs) in Clear Cell Kidney Carcinoma Revealed by Reconstruction and Comprehensive Analysis of the lncRNA-miRNA-mRNA Regulatory Network. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 24: 8250-8263. PMID 30444862 DOI: 10.12659/MSM.910773  0.76
2018 Mou H, Yu L, Liao Q, Hou X, Wu Y, Cui Q, Yan N, Ma R, Wang L, Yao M, Wang K. Successful response to the combination of immunotherapy and chemotherapy in cholangiocarcinoma with high tumour mutational burden and PD-L1 expression: a case report. Bmc Cancer. 18: 1105. PMID 30419854 DOI: 10.1186/s12885-018-5021-2  0.64
2018 Bhimsaria D, Rodríguez-Martínez JA, Pan J, Roston D, Korkmaz EN, Cui Q, Ramanathan P, Ansari AZ. Specificity landscapes unmask submaximal binding site preferences of transcription factors. Proceedings of the National Academy of Sciences of the United States of America. PMID 30341220 DOI: 10.1073/pnas.1811431115  0.4
2018 Vujović M, Huynh M, Steiner S, Garcia-Fernandez P, Elstner M, Cui Q, Gruden M. Exploring the applicability of density functional tight binding to transition metal ions. Parameterization for nickel with the spin-polarized DFTB3 model. Journal of Computational Chemistry. PMID 30299559 DOI: 10.1002/jcc.25614  0.76
2018 Nomura Y, Roston D, Montemayor EJ, Cui Q, Butcher SE. Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1. Nucleic Acids Research. PMID 30215753 DOI: 10.1093/nar/gky812  0.4
2018 Roston D, Lu X, Fang D, Demapan D, Cui Q. Analysis of Phosphoryl-Transfer Enzymes with QM/MM Free Energy Simulations. Methods in Enzymology. 607: 53-90. PMID 30149869 DOI: 10.1016/bs.mie.2018.05.005  0.4
2018 Lu J, Zhu L, Zheng LP, Cui Q, Zhu HH, Zhao H, Shen ZJ, Dong HY, Chen SS, Wu WZ, Tan JM. Overexpression of ULK1 Represents a Potential Diagnostic Marker for Clear Cell Renal Carcinoma and the Antitumor Effects of SBI-0206965. Ebiomedicine. PMID 30078736 DOI: 10.1016/j.ebiom.2018.07.034  0.72
2018 Cai X, Haider K, Lu J, Radic S, Son CY, Cui Q, Gunner MR. Network analysis of a proposed exit pathway for protons to the P-side of cytochrome c oxidase. Biochimica Et Biophysica Acta. PMID 29778689 DOI: 10.1016/j.bbabio.2018.05.010  0.72
2018 Li Y, Zhang Y, Großerüschkamp F, Stephan S, Cui Q, Kötting C, Xia F, Gerwert K. Specific Substates of Ras to Interact with GAPs and Effectors: Revealed by Theoretical Simulations and FTIR Experiments. The Journal of Physical Chemistry Letters. PMID 29488771 DOI: 10.1021/acs.jpclett.8b00342  1
2018 Bao H, Das D, Courtney NA, Jiang Y, Briguglio JS, Lou X, Roston D, Cui Q, Chanda B, Chapman ER. Dynamics and number of trans-SNARE complexes determine nascent fusion pore properties. Nature. 554: 260-263. PMID 29420480 DOI: 10.1038/nature25481  0.48
2018 Zheng Y, Cui Q. Multiple Pathways and Timescales for Conformational Transitions in apo-Adenylate Kinase. Journal of Chemical Theory and Computation. PMID 29378407 DOI: 10.1021/acs.jctc.7b01064  0.52
2017 Santos TMA, Lammers MG, Zhou M, Sparks IL, Rajendran M, Fang D, De Jesus CLY, Carneiro GFR, Cui Q, Weibel DB. Small molecule chelators reveal that iron starvation inhibits late stages of bacterial cytokinesis. Acs Chemical Biology. PMID 29227619 DOI: 10.1021/acschembio.7b00560  0.36
2017 Liang D, Hong J, Fang D, Bennett JW, Mason SE, Hamers RJ, Cui Q. Analysis of the conformational properties of amine ligands at the gold/water interface with QM, MM and QM/MM simulations. Physical Chemistry Chemical Physics : Pccp. PMID 29226924 DOI: 10.1039/c7cp06709g  0.36
2017 Christensen AS, Kromann JC, Jensen JH, Cui Q. Intermolecular interactions in the condensed phase: Evaluation of semi-empirical quantum mechanical methods. The Journal of Chemical Physics. 147: 161704. PMID 29096452 DOI: 10.1063/1.4985605  0.32
2017 Son CY, Yethiraj A, Cui Q. Cavity hydration dynamics in cytochrome c oxidase and functional implications. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973914 DOI: 10.1073/pnas.1707922114  0.76
2017 Gruden M, Andjeklović L, Jissy AK, Stepanović S, Zlatar M, Cui Q, Elstner M. Benchmarking density functional tight binding models for barrier heights and reaction energetics of organic molecules. Journal of Computational Chemistry. PMID 28736893 DOI: 10.1002/jcc.24866  0.76
2017 Yu T, Zhang X, Zhong L, Cui Q, Hu X, Li B, Wang Z, Dai Y, Zheng Y, Bin P. The use of a 0.20 μm particulate matter filter decreases cytotoxicity in lung epithelial cells following air-liquid interface exposure to motorcycle exhaust. Environmental Pollution (Barking, Essex : 1987). 227: 287-295. PMID 28477553 DOI: 10.1016/j.envpol.2017.04.080  0.76
2017 Troiano JM, McGeachy AC, Olenick LL, Fang D, Liang D, Hong J, Kuech TR, Caudill E, Pedersen JA, Cui Q, Geiger FM. Quantifying the Electrostatics of Polycation-Lipid Bilayer Interactions. Journal of the American Chemical Society. PMID 28358209 DOI: 10.1021/jacs.6b12887  0.36
2017 Lu X, Ovchinnikov V, Demapan D, Roston D, Cui Q. Regulation and Plasticity of Catalysis in Enzymes: Insights from Analysis of Mechanochemical Coupling in Myosin. Biochemistry. PMID 28225609 DOI: 10.1021/acs.biochem.7b00016  0.4
2016 Zheng Y, Cui Q. Microscopic Mechanisms that Govern the Titration Response and pKa Values of Buried Residues in Staphylococcal Nuclease Mutants. Proteins. PMID 27862310 DOI: 10.1002/prot.25213  0.52
2016 Goldschen-Ohm MP, Klenchin VA, White DS, Cowgill JB, Cui Q, Goldsmith RH, Chanda B. Structure and dynamics underlying elementary ligand binding events in human pacemaking channels. Elife. 5. PMID 27858593 DOI: 10.7554/eLife.20797  0.48
2016 Lu X, Fang D, Ito S, Okamoto Y, Ovchinnikov V, Cui Q. QM/MM free energy simulations: recent progress and challenges. Molecular Simulation. 42: 1056-1078. PMID 27563170 DOI: 10.1080/08927022.2015.1132317  1
2016 Roston D, Cui Q. Substrate and Transition State Binding in Alkaline Phosphatase Analyzed by Computation of Oxygen Isotope Effects. Journal of the American Chemical Society. PMID 27541005 DOI: 10.1021/jacs.6b07347  0.4
2016 Liao X, Zhao J, Jiao C, Lei L, Qiang Y, Cui Q. A Segmentation Method for Lung Parenchyma Image Sequences Based on Superpixels and a Self-Generating Neural Forest. Plos One. 11: e0160556. PMID 27532214 DOI: 10.1371/journal.pone.0160556  0.56
2016 Hu Y, Sun J, Wu Z, Yu J, Cui Q, Pu C, Liang B, Luo Y, Shi J, Jin A, Xiao L, Huang H. Predominant cerebral cytokine release syndrome in CD19-directed chimeric antigen receptor-modified T cell therapy. Journal of Hematology & Oncology. 9: 70. PMID 27526682 DOI: 10.1186/s13045-016-0299-5  0.48
2016 Lietz CB, Chen Z, Yun Son C, Pang X, Cui Q, Li L. Multiple gas-phase conformations of proline-containing peptides: is it always cis/trans isomerization? The Analyst. PMID 27434776 DOI: 10.1039/c5an00835b  0.36
2016 Cui Q, Hernandez R, Mason SE, Frauenheim T, Pedersen JA, Geiger FM. Sustainable Nanotechnology: Opportunities and Challenges for Theoretical/Computational Studies. The Journal of Physical Chemistry. B. PMID 27388532 DOI: 10.1021/acs.jpcb.6b03976  1
2016 Zhao W, Xu Z, Cui Q, Sahai N. Predicting the Structure-Activity Relationship of Hydroxyapatite-binding Peptides by Enhanced-sampling Molecular Simulation. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 27329793 DOI: 10.1021/acs.langmuir.6b01582  0.52
2016 Roston D, Demapan D, Cui Q. Leaving Group Ability Observably Affects Transition State Structure in a Single Enzyme Active Site. Journal of the American Chemical Society. PMID 27186960 DOI: 10.1021/jacs.6b03156  0.4
2016 Kromann JC, Christensen AS, Cui Q, Jensen JH. Towards a barrier height benchmark set for biologically relevant systems. Peerj. 4: e1994. PMID 27168993 DOI: 10.7717/peerj.1994  0.32
2016 Zhang L, Rajendram M, Weibel DB, Yethiraj A, Cui Q. Ionic Hydrogen Bonds and Lipid Packing Defects Determine the Binding Orientation and Insertion Depth of RecA on Multi-component Lipid Bilayers. The Journal of Physical Chemistry. B. PMID 27095675 DOI: 10.1021/acs.jpcb.6b02164  0.76
2016 Christensen AS, Kubař T, Cui Q, Elstner M. Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications. Chemical Reviews. PMID 27074247 DOI: 10.1021/acs.chemrev.5b00584  0.76
2016 Zhu L, Wu J, Liu L, Liu Y, Yan Y, Cui Q, Chen X. Gating mechanism of mechanosensitive channel of large conductance: a coupled continuum mechanical-continuum solvation approach. Biomechanics and Modeling in Mechanobiology. PMID 27009075 DOI: 10.1007/s10237-016-0783-4  1
2016 Bai H, Xue R, Bao H, Zhang L, Yethiraj A, Cui Q, Chapman ER. Different states of synaptotagmin regulate evoked versus spontaneous release. Nature Communications. 7: 10971. PMID 27001899 DOI: 10.1038/ncomms10971  1
2016 Qu X, Yu H, Jia B, Yu X, Cui Q, Liu Z, Sun C, Chu Y. Association of downregulated HDAC 2 with the impaired mitochondrial function and cytokine secretion in the monocytes/macrophages from gestational diabetes mellitus patients. Cell Biology International. PMID 26936353 DOI: 10.1002/cbin.10598  0.64
2016 Son CY, McDaniel JG, Schmidt JR, Cui Q, Yethiraj A. First Principles United Atom Force Field for the Ionic Liquid [BMIM][BF4] : An Alternative to Charge Scaling. The Journal of Physical Chemistry. B. PMID 26900644 DOI: 10.1021/acs.jpcb.5b12371  0.36
2016 Cui Q, Yang S, Ye P, Tian E, Sun G, Zhou J, Sun G, Liu X, Chen C, Murai K, Zhao C, Azizian KT, Yang L, Warden C, Wu X, et al. Downregulation of TLX induces TET3 expression and inhibits glioblastoma stem cell self-renewal and tumorigenesis. Nature Communications. 7: 10637. PMID 26838672 DOI: 10.1038/ncomms10637  0.76
2016 Zheng B, Zhang F, Dong H, Chai L, Shu F, Yi S, Wang Z, Cui Q, Dong H, Zhang Z, Hou D, Yang J, She Y. Draft genome sequence of Paenibacillus sp. strain A2. Standards in Genomic Sciences. 11: 9. PMID 26819653 DOI: 10.1186/s40793-015-0125-7  0.56
2016 Lu J, Hu L, Cheng J, Fang D, Wang C, Yu K, Jiang H, Cui Q, Xu Y, Luo C. A computational investigation on the substrate preference of ten-eleven-translocation 2 (TET2). Physical Chemistry Chemical Physics : Pccp. PMID 26799843 DOI: 10.1039/c5cp07266b  1
2016 Bi Y, Meng Y, Wu H, Cui Q, Luo Y, Xue X. Expression of the potential cancer stem cell markers CD133 and CD44 in medullary thyroid carcinoma: A ten-year follow-up and prognostic analysis. Journal of Surgical Oncology. 113: 144-151. PMID 26799258 DOI: 10.1002/jso.24124  0.36
2016 Wang HH, Cui Q, Zhang T, Wang ZB, Ouyang YC, Shen W, Ma JY, Schatten H, Sun QY. Rab3A, Rab27A, and Rab35 regulate different events during mouse oocyte meiotic maturation and activation. Histochemistry and Cell Biology. PMID 26791531 DOI: 10.1007/s00418-015-1404-5  0.44
2016 Liu YJ, Song X, Li Y, Xuan J, Cui Q, Wang J, Feng Y. Low stability of the reduced state of Mycobacterium tuberculosis NrdH redoxin. Febs Letters. PMID 26786191 DOI: 10.1002/1873-3468.12068  0.76
2016 Li X, Guo Y, Cui Q, Fu L, Zhang J, Qiu S. Moisture diffusion and transfer dynamic analysis of eggplant during vacuum freeze-drying based on image processing technique Nongye Gongcheng Xuebao/Transactions of the Chinese Society of Agricultural Engineering. 32: 304-311. DOI: 10.11975/j.issn.1002-6819.2016.01.042  0.4
2016 Wang H, Cui Q, Liu B, Gao Y, Li Z, Ma Y. Compression and shear on lead in a rotational diamond anvil cell High Pressure Research. 1-8. DOI: 10.1080/08957959.2015.1130827  0.64
2016 Li Y, Wang YZ, Cui Q. Energy efficiency measures for airlines: An application of virtual frontier dynamic range adjusted measure Journal of Renewable and Sustainable Energy. 8. DOI: 10.1063/1.4938221  1
2016 Dong Y, Tang S, Cui H, Zhang J, Cui Q. The synthesis of 3D InN architectures via chemical vapor deposition and their optical properties Rsc Advances. 6: 14958-14963. DOI: 10.1039/c5ra19865h  0.64
2016 Zhang Y, Guo F, Cui Q, Lu M, Song X, Tang H, Li Q. Measurement and Correlation of the Solubility of Vanillic Acid in Eight Pure and Water + Ethanol Mixed Solvents at Temperatures from (293.15 to 323.15) K Journal of Chemical and Engineering Data. 61: 420-429. DOI: 10.1021/acs.jced.5b00619  0.64
2016 Yang B, Xu J, Zhang Y, Zeng H, Tian T, Chu Y, Pan Y, Cui Q. Improvement and luminescent mechanism of Bi4Si3O12 scintillation crystals by Dy3+ doping Nuclear Instruments and Methods in Physics Research, Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 807: 1-4. DOI: 10.1016/j.nima.2015.10.033  0.64
2016 Cui QL, Parkes D, Westerbaan D, Nayak SS, Zhou Y, Liu D, Goodwin F, Bhole S, Chen DL. Effect of coating on fiber laser welded joints of DP980 steels Materials and Design. 90: 516-523. DOI: 10.1016/j.matdes.2015.10.098  0.72
2016 Li Y, Wang YZ, Cui Q. Has airline efficiency affected by the inclusion of aviation into European Union Emission Trading Scheme? Evidences from 22 airlines during 2008-2012 Energy. 96: 8-22. DOI: 10.1016/j.energy.2015.12.039  1
2016 Ma L, Rui Z, Wu Q, Yang H, Yin Y, Liu Z, Cui Q, Wang H. Performance evaluation of shaped MIL-101-ethanol working pair for adsorption refrigeration Applied Thermal Engineering. 95: 223-228. DOI: 10.1016/j.applthermaleng.2015.09.023  0.8
2016 Cui Q, Zhang Y, Peng Z. Dealloyed silver nanoparticles as efficient catalyst towards oxygen reduction in alkaline solution Chemical Research in Chinese Universities. 32: 106-111. DOI: 10.1007/s40242-016-5277-5  0.44
2016 Meng X, Huang H, Zhang Q, Li C, Cui Q. Efficient production of propylene and gasoline from methanol in multi-regime riser Korean Journal of Chemical Engineering. 1-8. DOI: 10.1007/s11814-015-0265-x  0.52
2016 Meng X, Huang H, Zhang Q, Zhang M, Li C, Cui Q. Conversion of methanol into light olefins over ZSM-11 catalyst in a circulating fluidized-bed unit Korean Journal of Chemical Engineering. 1-7. DOI: 10.1007/s11814-015-0234-4  0.52
2016 Sun Y, Tang D, Cui Q. Comparison of a fuzzy control and the data-driven model for flood forecasting Natural Hazards. 1-18. DOI: 10.1007/s11069-016-2220-5  0.64
2016 Cui QL, Wu HN, Shen SL, Xu YS. Geological difficulties and countermeasures for socket diaphragm walls in weathered granite in Shenzhen, China Bulletin of Engineering Geology and the Environment. 75: 263-273. DOI: 10.1007/s10064-015-0740-y  0.68
2016 Li H, Song P, Qiao T, Cui Q, Song X, Zhang B. A quaternary composite fiber membrane for guided tissue regeneration Polymers For Advanced Technologies. 27: 178-184. DOI: 10.1002/pat.3616  0.48
2015 Yu H, Yao F, Li Y, Li J, Cui QC. Castleman disease variant of POEMS syndrome complicated with multiple cerebral infarction: a rare case report and review of literature. International Journal of Clinical and Experimental Pathology. 8: 13578-83. PMID 26722578  1
2015 Fu F, Zhao K, Li J, Xu J, Zhang Y, Liu C, Yang W, Gao C, Li J, Zhang H, Li Y, Cui Q, Wang H, Tao L, Wang J, et al. Direct Evidence that Myocardial Insulin Resistance following Myocardial Ischemia Contributes to Post-Ischemic Heart Failure. Scientific Reports. 5: 17927. PMID 26659007 DOI: 10.1038/srep17927  1
2015 Zhang Y, Zhao NA, Wang JK, Zhu SM, Zhu HL, Liu B, Cui QW, Guan GC, Tian G. Telmisartan inhibited angiotensin II-induced collagen metabolic imbalance without directly targeting TGF-β 1/Smad signaling pathway in cardiac fibroblasts. Minerva Cardioangiologica. 63: 507-514. PMID 26657532  0.64
2015 Wang H, Wang Y, Zhao L, Cui Q, Wang Y, Du G. Pinocembrin attenuates MPP(+)-induced neurotoxicity by the induction of heme oxygenase-1 through ERK1/2 pathway. Neuroscience Letters. PMID 26655464 DOI: 10.1016/j.neulet.2015.11.048  0.6
2015 Hu Y, Cui Q, Luo C, Luo Y, Shi J, Huang H. A promising sword of tomorrow: Human γδ T cell strategies reconcile allo-HSCT complications. Blood Reviews. PMID 26654098 DOI: 10.1016/j.blre.2015.11.002  0.48
2015 Cui Q, Li X, Zhu H. Curcumin ameliorates dopaminergic neuronal oxidative damage via activation of the Akt/Nrf2 pathway. Molecular Medicine Reports. PMID 26648392 DOI: 10.3892/mmr.2015.4657  0.76
2015 Yang W, Chen Q, Liu P, Cheng H, Cui Q, Wei D, Zhang Q, Qiu J. Abnormal brain activation during directed forgetting of negative memory in depressed patients. Journal of Affective Disorders. PMID 26639452 DOI: 10.1016/j.jad.2015.05.034  0.88
2015 Jin H, Goyal P, Das AK, Gaus M, Meuwly M, Cui Q. Copper Oxidation/Reduction in Water and Protein: Studies with DFTB3/MM and VALBOND Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. PMID 26624804 DOI: 10.1021/acs.jpcb.5b09656  1
2015 Guo G, Fang T, Wang C, Huang Y, Tian F, Cui Q, Wang H. Isolation and characterization of two novel halotolerant Catechol 2, 3-dioxygenases from a halophilic bacterial consortium. Scientific Reports. 5: 17603. PMID 26621792 DOI: 10.1038/srep17603  0.52
2015 Kong X, Liu Q, Lin G, Zhao D, Qiu H, Cui Q. The first attempt in local excision of anorectal malignant melanoma using transanal endoscopic microsurgery. International Journal of Clinical and Experimental Pathology. 8: 11735-40. PMID 26617919  0.64
2015 Sun L, Wu Q, Liao K, Yu P, Cui Q, Rui Q, Wang D. Contribution of heavy metals to toxicity of coal combustion related fine particulate matter (PM2.5) in Caenorhabditis elegans with wild-type or susceptible genetic background. Chemosphere. 144: 2392-2400. PMID 26610299 DOI: 10.1016/j.chemosphere.2015.11.028  0.8
2015 Gaus M, Jin H, Demapan D, Christensen AS, Goyal P, Elstner M, Cui Q. DFTB3 Parametrization for Copper: The Importance of Orbital Angular Momentum Dependence of Hubbard Parameters. Journal of Chemical Theory and Computation. 11: 4205-19. PMID 26575916 DOI: 10.1021/acs.jctc.5b00600  1
2015 Ngo V, da Silva MC, Kubillus M, Li H, Roux B, Elstner M, Cui Q, Salahub DR, Noskov SY. Quantum Effects in Cation Interactions with First and Second Coordination Shell Ligands in Metalloproteins. Journal of Chemical Theory and Computation. 11: 4992-5001. PMID 26574284 DOI: 10.1021/acs.jctc.5b00524  1
2015 Korkmaz EN, Taylor KC, Andreas MP, Ajay G, Heinze NT, Cui Q, Rayment I. A composite approach towards a complete model of the myosin rod. Proteins. PMID 26573747 DOI: 10.1002/prot.24964  1
2015 Liao F, Zheng Y, Cai J, Fan J, Wang J, Yang J, Cui Q, Xu G, Tang C, Geng B. Catestatin attenuates endoplasmic reticulum induced cell apoptosis by activation type 2 muscarinic acetylcholine receptor in cardiac ischemia/reperfusion. Scientific Reports. 5: 16590. PMID 26567709 DOI: 10.1038/srep16590  0.76
2015 Mao S, Cui Q, Piao M. Tolerance analysis of multilayer diffractive optics based on polychromatic integral diffraction efficiency. Applied Optics. 54: 9528-32. PMID 26560782  0.36
2015 Sha Y, Mathew I, Cui Q, Clay M, Gao F, Zhang XJ, Gu Z. Rapid degradation of azo dye methyl orange using hollow cobalt nanoparticles. Chemosphere. 144: 1530-1535. PMID 26498101 DOI: 10.1016/j.chemosphere.2015.10.040  0.36
2015 Rajendram M, Zhang L, Reynolds BJ, Auer GK, Tuson HH, Ngo KV, Cox MM, Yethiraj A, Cui Q, Weibel DB. Anionic Phospholipids Stabilize RecA Filament Bundles in Escherichia coli. Molecular Cell. 60: 374-84. PMID 26481664 DOI: 10.1016/j.molcel.2015.09.009  0.76
2015 Chai LJ, Jiang XW, Zhang F, Zheng BW, Shu FC, Wang ZL, Cui QF, Dong HP, Zhang ZZ, Hou DJ, She YH. Isolation and characterization of a crude oil degrading bacteria from formation water: comparative genomic analysis of environmental Ochrobactrum intermedium isolate versus clinical strains. Journal of Zhejiang University. Science. B. 16: 865-74. PMID 26465134 DOI: 10.1631/jzus.B1500029  0.56
2015 Tang XD, Zhou LY, Zhang ST, Xu YQ, Cui QC, Li L, Lu JJ, Li P, Lu F, Wang FY, Wang P, Bian LQ, Bian ZX. Randomized double-blind clinical trial of Moluodan () for the treatment of chronic atrophic gastritis with dysplasia. Chinese Journal of Integrative Medicine. PMID 26424292 DOI: 10.1007/s11655-015-2114-5  0.64
2015 Cui Q, Zhu S, Yan Y, Ye Q, Ziener U, Cao Z. Superparamagnetic Fe3O4/Poly(N-isopropyl acrylamide) Nanocomposites Synthesized in Inverse Miniemulsions: Magnetic and Particle Properties. Journal of Nanoscience and Nanotechnology. 15: 4608-18. PMID 26369088  0.48
2015 Cui Q, Liu YS, Li DF, Zhang P, Guo J, Liu C, Jiang WH, Zhang B, Liu SB, Zeng YJ. Cemented hip hemiarthroplasty clinical observations on unstable intertrochanteric fracture in elderlies. European Journal of Trauma and Emergency Surgery : Official Publication of the European Trauma Society. PMID 26351080 DOI: 10.1007/s00068-015-0566-0  0.44
2015 Yuan C, Yang S, Wang H, Cui Q. Effects of glycosaminoglycan from Mactra veneriformis on the protein C system and expression of relevant factors in human umbilical vein endothelial cells. Blood Coagulation & Fibrinolysis : An International Journal in Haemostasis and Thrombosis. PMID 26340457 DOI: 10.1097/MBC.0000000000000385  0.56
2015 Fang R, Cui Q, Sun J, Duan X, Ma X, Wang W, Cheng B, Liu Y, Hou Y, Bai G. PDK1/Akt/PDE4D axis identified as a target for asthma remedy synergistic with β2 AR agonists by a natural agent arctigenin. Allergy. PMID 26335809 DOI: 10.1111/all.12763  0.36
2015 Christensen AS, Elstner M, Cui Q. Improving intermolecular interactions in DFTB3 using extended polarization from chemical-potential equalization. The Journal of Chemical Physics. 143: 084123. PMID 26328834 DOI: 10.1063/1.4929335  1
2015 Zhang J, Zhu H, Wu X, Cui H, Li D, Jiang J, Gao C, Wang Q, Cui Q. Plasma-assisted synthesis and pressure-induced structural transition of single-crystalline SnSe nanosheets. Nanoscale. 7: 10807-16. PMID 26269801  0.76
2015 Chen F, Bo J, Ma X, Dong L, Shan Z, Cui Q, Chen H, Wang K. A New Membrane Lipid Raft Gene SpFLT-1 Facilitating the Endocytosis of Vibrio alginolyticus in the Crab Scylla paramamosain. Plos One. 10: e0133443. PMID 26186350 DOI: 10.1371/journal.pone.0133443  0.64
2015 Liu J, Sun XF, Qian J, Bai XY, Zhu H, Cui QU, Li XY, Chen YD, Wang YM, Liu YB. Immunochemotherapy for primary central nervous system lymphoma with rituximab, methotrexate, cytarabine and dexamethasone: Retrospective analysis of 18 cases. Molecular and Clinical Oncology. 3: 949-953. PMID 26171213 DOI: 10.3892/mco.2015.566  0.76
2015 Taylor KC, Buvoli M, Korkmaz EN, Buvoli A, Zheng Y, Heinze NT, Cui Q, Leinwand LA, Rayment I. Skip residues modulate the structural properties of the myosin rod and guide thick filament assembly. Proceedings of the National Academy of Sciences of the United States of America. PMID 26150528 DOI: 10.1073/pnas.1505813112  1
2015 Korkmaz EN, Volkman BF, Cui Q. Interplay of Electrostatics and Hydrophobic Effects in the Metamorphic Protein Human Lymphotactin. The Journal of Physical Chemistry. B. PMID 26134347 DOI: 10.1021/acs.jpcb.5b02810  1
2015 Wang Q, Yan T, Wang K, Zhu H, Cui Q, Zou B. Pressure-induced reversible phase transition in thiourea dioxide crystal. The Journal of Chemical Physics. 142: 244701. PMID 26133443 DOI: 10.1063/1.4922842  0.76
2015 Li YH, Zhang G, Cui Q. PPUS: a web server to predict PUS-specific pseudouridine sites. Bioinformatics (Oxford, England). PMID 26076723 DOI: 10.1093/bioinformatics/btv366  0.56
2015 Zhou Q, Zhang J, Cui Q, Li X, Gao G, Wang Y, Xu Y, Gao X. GSK1904529A, an insulin‑like growth factor‑1 receptor inhibitor, inhibits glioma tumor growth, induces apoptosis and inhibits migration. Molecular Medicine Reports. 12: 3381-5. PMID 26035416 DOI: 10.3892/mmr.2015.3869  0.76
2015 Deng Z, He X, Cui Q, Zhao X, Yang Y. [Reconstruction of deep wounds in old patients with cutaneous malignant tumor after artificial dermis combined with negative pressure wound therapy]. Zhong Nan Da Xue Xue Bao. Yi Xue Ban = Journal of Central South University. Medical Sciences. 40: 539-42. PMID 26032081 DOI: 10.11817/j.issn.1672-7347.2015.05.014  0.8
2015 He J, He D, Wang Y, Cui Q, Ceballos F, Zhao H. Spatiotemporal dynamics of excitons in monolayer and bulk WS2. Nanoscale. 7: 9526-31. PMID 25947347 DOI: 10.1039/c5nr00188a  0.6
2015 Zheng Y, Cui Q. The histone H3 N-terminal tail: a computational analysis of the free energy landscape and kinetics. Physical Chemistry Chemical Physics : Pccp. 17: 13689-98. PMID 25942635 DOI: 10.1039/c5cp01858g  1
2015 Xi HW, Duan WQ, Cui QQ, You ZH, Zhao Z, Zhang P. Transumbilical Single-Site Laparoscopic Inguinal Hernia Inversion and Ligation in Girls. Journal of Laparoendoscopic & Advanced Surgical Techniques. Part A. 25: 522-5. PMID 25941750 DOI: 10.1089/lap.2014.0383  0.44
2015 Cui QK, Liu WD, Liu P, Li XY, Zhang LQ, Ma LJ, Ren YF, Wu YP, Wang ZG. Arterial occlusion to treat basilar artery dissecting aneurysm. Neurologia I Neurochirurgia Polska. 49: 99-106. PMID 25890924 DOI: 10.1016/j.pjnns.2015.02.003  0.56
2015 Wei ZZ, Vatcher G, Tin AH, Teng JL, Wang J, Cui QH, Chen JG, Yu AC. Positively-charged semi-tunnel is a structural and surface characteristic of polyphosphate-binding proteins: an in-silico study. Plos One. 10: e0123713. PMID 25879219 DOI: 10.1371/journal.pone.0123713  0.76
2015 Ji Z, Yan H, Cui Q, Wang E, Chen W, Chen W. Genetic divergence and gene flow among Mesorhizobium strains nodulating the shrub legume Caragana. Systematic and Applied Microbiology. 38: 176-83. PMID 25864639 DOI: 10.1016/j.syapm.2015.02.007  0.6
2015 Lu Q, Li D, Yang Z, Han Y, Cui Q, Zhang Z, Yu T. [Acute response of right ventricular function to iloprost inhalations in patients with pulmonary arterial hypertension: preliminary evaluation 
with cardiac magnetic resonance imaging]. Zhongguo Fei Ai Za Zhi = Chinese Journal of Lung Cancer. 18: 167-71. PMID 25800574 DOI: 10.3779/j.issn.1009-3419.2015.03.07  0.76
2015 Bai X, Cui Q, Liu Y. Interstitial pneumonitis related to rituximab therapy for Waldenström's macroglobulinemia. Clinical Case Reports. 3: 133-4. PMID 25798285 DOI: 10.1002/ccr3.152  0.6
2015 Meng QB, Kang WM, Yu JC, Liu YQ, Ma ZQ, Zhou L, Cui QC, Zhou WX. Overexpression of eukaryotic translation initiation factor 5A2 (EIF5A2) correlates with cell aggressiveness and poor survival in gastric cancer. Plos One. 10: e0119229. PMID 25793713 DOI: 10.1371/journal.pone.0119229  0.56
2015 Guo JC, Li J, Zhao YP, Zhou L, Cui QC, Zhou WX, Zhang TP, You L. Expression of c-fos was associated with clinicopathologic characteristics and prognosis in pancreatic cancer. Plos One. 10: e0120332. PMID 25789763 DOI: 10.1371/journal.pone.0120332  0.56
2015 Qian J, Cui QU, Liu Y, Li X, Sun X, Zhu H, Wang C. Isolated primary intracranial myeloid sarcoma with neuromeningeal infiltration: A case report. Oncology Letters. 9: 1647-1650. PMID 25789016 DOI: 10.3892/ol.2015.2964  0.76
2015 Chen Y, Cui Q, Xu Y, Yang S, Gao M, Wang Y. Effects of tung oilseed FAD2 and DGAT2 genes on unsaturated fatty acid accumulation in Rhodotorula glutinis and Arabidopsis thaliana. Molecular Genetics and Genomics : Mgg. PMID 25754996 DOI: 10.1007/s00438-015-1011-0  0.48
2015 Yang S, Halim AY, Werner BC, Gwathmey FW, Cui Q. Does osteonecrosis of the femoral head increase surgical and medical complication rates after total hip arthroplasty? A comprehensive analysis in the United States. Hip International : the Journal of Clinical and Experimental Research On Hip Pathology and Therapy. 25: 237-44. PMID 25704263 DOI: 10.5301/hipint.5000224  0.72
2015 Goyal P, Yang S, Cui Q. Microscopic basis for kinetic gating in Cytochrome c oxidase: insights from QM/MM analysis. Chemical Science (Royal Society of Chemistry : 2010). 6: 826-841. PMID 25678950 DOI: 10.1039/C4SC01674B  1
2015 Guo W, Fu J, Chen X, Gao B, Fu Z, Fan H, Cui Q, Zhu X, Zhao Y, Yang T, Fan D, Zhou H. The effects of estrogen on serum level and hepatocyte expression of PCSK9. Metabolism: Clinical and Experimental. 64: 554-60. PMID 25665485 DOI: 10.1016/j.metabol.2015.01.009  0.96
2015 Zheng YT, Cui QQ, Hong YM, Yao WG. A meta-analysis of high dose, intermittent vitamin D supplementation among older adults. Plos One. 10: e0115850. PMID 25602255 DOI: 10.1371/journal.pone.0115850  0.36
2015 Du S, Wang Z, Sang X, Lu X, Zheng Y, Xu H, Xu Y, Chi T, Zhao H, Wang W, Cui Q, Zhong S, Huang J, Mao Y. Surgical resection improves the outcome of the patients with neuroendocrine tumor liver metastases: large data from Asia. Medicine. 94: e388. PMID 25590842 DOI: 10.1097/MD.0000000000000388  0.56
2015 Xu Z, Yang Y, Zhao W, Wang Z, Landis WJ, Cui Q, Sahai N. Molecular mechanisms for intrafibrillar collagen mineralization in skeletal tissues. Biomaterials. 39: 59-66. PMID 25477172 DOI: 10.1016/j.biomaterials.2014.10.048  1
2015 Yuan C, Liu P, Han X, Cui Q. Hypoglycemic effects of glycosaminoglycan from Urechis unicinctus in diabetic mice. Journal of Medicinal Food. 18: 190-4. PMID 25289478 DOI: 10.1089/jmf.2013.3139  0.64
2015 Lu X, Gaus M, Elstner M, Cui Q. Parametrization of DFTB3/3OB for magnesium and zinc for chemical and biological applications. The Journal of Physical Chemistry. B. 119: 1062-82. PMID 25178644 DOI: 10.1021/jp506557r  1
2015 Zheng Q, Zhao K, Han X, Huff AF, Cui Q, Babcock SA, Yu S, Zhang Y. Inhibition of AMPK accentuates prolonged caloric restriction-induced change in cardiac contractile function through disruption of compensatory autophagy. Biochimica Et Biophysica Acta. 1852: 332-42. PMID 24793415 DOI: 10.1016/j.bbadis.2014.04.023  0.64
2015 Wang HQ, Wang YM, Cui QF, Zhao WL, Wang LN, Zhang JY. Actesoide induces heme oxygenase-1 expression through activating ERK1/2 pathway Journal of Xi'An Jiaotong University (Medical Sciences). 36: 117-120. DOI: 10.7652/jdyxb201501022  0.52
2015 Qi Y, Cao M, Huang L, Cui Q, Yu L, Wu Y. Compatibility of microbe-weak gel combinational flooding Shiyou Xuebao/Acta Petrolei Sinica. 36: 490-495. DOI: 10.7623/syxb201504010  0.52
2015 Cui Q, Huang D, Song XP, Tian JH, Yang KH. Comparative analysis of clinical pathway appraisal tools and reporting standards Chinese Journal of Evidence-Based Medicine. 15: 810-815. DOI: 10.7507/1672-2531.20150141  0.48
2015 Zhao Y, Wang Y, Cui Q. Calculating intrinsic and extrinsic camera parameters based on the pnp problem Journal of Engineering and Technological Sciences. 46: 258-270. DOI: 10.5614/j.eng.technol.sci.2014.46.3.2  0.6
2015 Yin G, Gong Y, Wang C, Cui Q. Study on effects of novel point grinding wheels processing parameters on grinding temperature Zhongguo Jixie Gongcheng/China Mechanical Engineering. 26: 716-720. DOI: 10.3969/j.issn.1004-132X.2015.06.002  0.52
2015 Zhang B, Cui QF, Xue CX, Piao MX, Yu CY. Achromatism about negative refractive index lens Guangzi Xuebao/Acta Photonica Sinica. 44. DOI: 10.3788/gzxb20154403.0312004  0.8
2015 Yu C, Cui Q, Zhu H, Zhang B. Optical design of a double-side Fresnel lens for concentrator Guangxue Xuebao/Acta Optica Sinica. 35. DOI: 10.3788/AOS201535.0122008  0.8
2015 Zhang Y, Cui Q, Zhu H. Design of staring conformal optical system based on fixed corrector Guangxue Xuebao/Acta Optica Sinica. 35. DOI: 10.3788/AOS201535.0122004  0.76
2015 Cui Q, Guo F, Li QS, Wang K, Wang M, Wang WX, Gao XJ. Study and application of BH-type high efficiency packing in technical transformation of pre-cooling tower of coal to olefins Xiandai Huagong/Modern Chemical Industry. 35: 125-127. DOI: 10.16606/j.cnki.issn0253-4320.2015.12.033  0.64
2015 Cui Q, Du YP, Wei C, Gao X, Jia GX. Transformation of Lilium 'Sorbonne' (oriental hybrids) with anthocyanin regulatory gene B1/ C1 Beijing Linye Daxue Xuebao/Journal of Beijing Forestry University. 37: 100-108. DOI: 10.13332/j.1000-1522.20140414  0.56
2015 Gu HJ, Cui QF, Ma DH, Meng FY, Zhao XH. Supervisory control model based on semantic knowledge Jilin Daxue Xuebao (Gongxueban)/Journal of Jilin University (Engineering and Technology Edition). 45: 645-652. DOI: 10.13229/j.cnki.jdxbgxb201502046  0.4
2015 Zhao J, Cui QL, Liu Y, Wang W. Multi-objective hierarchical genetic fuzzy modeling for soft-sensor of overflow particle size in grinding process Kongzhi Yu Juece/Control and Decision. 30: 2187-2192. DOI: 10.13195/j.kzyjc.2014.1770  0.32
2015 Liao Z, Xiong Y, Cui Q. The improvement of zero-current-transition H6 type transformerless PV grid-connected inverter Journal of Computational Information Systems. 11: 6901-6909. DOI: 10.12733/jcis14638  0.32
2015 Qi Y, Li H, Cao M, Cui Q, Yu L, Dong H. A PAH-degrading strain JI 2 and its biodegradation potential ability Huagong Xuebao/Ciesc Journal. 66: 1072-1079. DOI: 10.11949/j.issn.0438-1157.20141365  0.52
2015 Ma CL, Wu XX, Huang FX, Li M, Wang XX, Zhou Q, Li FF, Cui QL. Brillouin scattering study on molecular liquid under high pressure and high temperature conditions Gaoya Wuli Xuebao/Chinese Journal of High Pressure Physics. 29: 35-41. DOI: 10.11858/gywlxb.2015.01.006  0.64
2015 Cui Q, Zhu S, Yan Y, Ye Q, Ziener U, Cao Z. Superparamagnetic Fe3O4 /poly(N -isopropyl acrylamide) nanocomposites synthesized in inverse miniemulsions: Magnetic and particle properties Journal of Nanoscience and Nanotechnology. 15: 4608-4618. DOI: 10.1166/jnn.2015.9716  0.48
2015 Cui Q, Hui H, Li P. Applicability of the ASME Exemption Curve for Chinese Pressure Vessel Steel Q345R Journal of Pressure Vessel Technology, Transactions of the Asme. 137. DOI: 10.1115/1.4030673  0.64
2015 Cui Q, Wang X, Zhang Y. Residential Appliances Direct Load Control in Real-Time Using Cooperative Game Ieee Transactions On Power Systems. DOI: 10.1109/TPWRS.2015.2391774  0.64
2015 Li X, Tao X, Liu Y, Cui Q. Autoregressive model based data gathering algorithm for wireless sensor networks with compressive sensing Ieee International Symposium On Personal, Indoor and Mobile Radio Communications, Pimrc. 2015: 2044-2048. DOI: 10.1109/PIMRC.2015.7343634  0.6
2015 Jiang Q, Wang H, Yuan T, Tao X, Cui Q. Overlaid-pilot based channel state information feedback for multicell cooperative networks Ieee International Symposium On Personal, Indoor and Mobile Radio Communications, Pimrc. 2015: 223-227. DOI: 10.1109/PIMRC.2015.7343299  0.6
2015 Fikadu MK, Sofotasios PC, Valkama M, Cui Q, Karagiannidis GK. Energy-efficiency analysis of regenerative cooperative systems under spatial correlation Ieee International Symposium On Personal, Indoor and Mobile Radio Communications, Pimrc. 2015: 217-222. DOI: 10.1109/PIMRC.2015.7343298  0.6
2015 Cui Q, Shi J, Du J, Zhao T, Xiong C. An approach for monitoring global vegetation based on multiangular observations from SMOS Ieee Journal of Selected Topics in Applied Earth Observations and Remote Sensing. 8: 604-616. DOI: 10.1109/JSTARS.2015.2388698  0.32
2015 Zhao T, Shi J, Bindlish R, Jackson TJ, Kerr YH, Cosh MH, Cui Q, Li Y, Xiong C, Che T. Refinement of SMOS multiangular brightness temperature toward soil moisture retrieval and its analysis over reference targets Ieee Journal of Selected Topics in Applied Earth Observations and Remote Sensing. 8: 589-603. DOI: 10.1109/JSTARS.2014.2336664  1
2015 Hong H, Tang S, Sheng Y, Cui Q. Magnetic circuit design and computation of a magnetorheological damper with exterior coil 2015 Ieee International Conference On Mechatronics and Automation, Icma 2015. 60-64. DOI: 10.1109/ICMA.2015.7237457  0.6
2015 Tao M, Cui Q, Tao X, Xiao H. Realtime dynamic clustering for interference and traffic adaptation in wireless TDD system Ieee Ssci 2014 - 2014 Ieee Symposium Series On Computational Intelligence - Cipls 2014: 2014 Ieee Symposium On Computational Intelligence in Production and Logistics Systems, Proceedings. 128-133. DOI: 10.1109/CIPLS.2014.7007171  0.6
2015 Piao M, Cui Q, Zhang B. Achromatic negative index lens with diffractive optics Journal of Optics (United Kingdom). 17. DOI: 10.1088/2040-8978/17/2/025608  0.36
2015 Ma S, Zhang Y, Cui Q, Zhao J, Peng Z. Understanding oxygen reactions in aprotic Li-O2 batteries Chinese Physics B. 25. DOI: 10.1088/1674-1056/25/1/018204  0.44
2015 Tang SX, Zhu HY, Jiang JR, Wu XX, Dong YX, Zhang J, Yang DP, Cui QL. Anomalous phase transition of InN nanowires under high pressure Chinese Physics B. 24. DOI: 10.1088/1674-1056/24/9/096101  0.76
2015 Zhao Y, Wu D, Hu C, Zhang X, Cui Q, Zhang R, Lin Y, Sheng P. Synchronous Output Control System of Two Megawatt Hot Cathode Bucket Ion Sources for NBI Plasma Science and Technology. 17: 247-250. DOI: 10.1088/1009-0630/17/3/13  0.56
2015 Cui Q, Liao X, Xu H. Tourist experience of nature in contemporary China: a cultural divergence approach Journal of Tourism and Cultural Change. 1-17. DOI: 10.1080/14766825.2015.1113981  0.32
2015 Cui Q, Zhang Q. Global stability of a discrete SIR epidemic model with vaccination and treatment Journal of Difference Equations and Applications. 21: 111-117. DOI: 10.1080/10236198.2014.990450  0.88
2015 Yao C, Cui Q, Peng J, Xu X, Liu R, Wang J, Tian Y, Li L. Solution processed blue phosphorescent organic light emitting diodes using a Ge-based small molecular host Journal of Materials Chemistry C. 3: 5017-5025. DOI: 10.1039/c5tc00612k  0.76
2015 Zhao F, Cui Q, Han S, Dong H, Zhang J, Ma F, Zhang Y. Enhanced rhamnolipid production of Pseudomonas aeruginosa SG by increasing copy number of rhlAB genes with modified promoter Rsc Advances. 5: 70546-70552. DOI: 10.1039/c5ra13415c  0.64
2015 Jian Z, Zhu H, Wu X, Cui H, Li D, Jiang J, Gao C, Wang Q, Cui Q. Plasma-assisted synthesis and pressure-induced structural transition of single-crystalline SnSe nanosheets Nanoscale. 7: 10807-10816. DOI: 10.1039/c5nr02131f  0.76
2015 Shi X, Cui Q, Zheng Y, Peng S, Wang G, Xie Y. Correction: Effect of selective oxidation of bacterial cellulose on degradability in phosphate buffer solution and their affinity for epidermal cell attachment Rsc Advances. 5: 9009. DOI: 10.1039/c4ra90063d  0.52
2015 Li D, Li F, Li Y, Wu X, Fu G, Liu Z, Wang X, Cui Q, Zhu H. High-Pressure Studies of Rubidium Azide by Raman and Infrared Spectroscopies Journal of Physical Chemistry C. 119: 16870-16878. DOI: 10.1021/acs.jpcc.5b05208  0.76
2015 Shi L, Yang K, Zhao Q, Wang H, Cui Q. Characterization and Mechanisms of H2S and SO2 Adsorption by Activated Carbon Energy and Fuels. 29: 6678-6685. DOI: 10.1021/acs.energyfuels.5b01696  0.8
2015 Cui QL, Xu YS, Shen SL, Yin ZY, Horpibulsuk S. Field performance of concrete pipes during jacking in cemented sandy silt Tunnelling and Underground Space Technology. 49: 336-344. DOI: 10.1016/j.tust.2015.05.005  0.68
2015 Li Y, Wang Yz, Cui Q. Evaluating airline efficiency: An application of Virtual Frontier Network SBM Transportation Research Part E: Logistics and Transportation Review. 81: 1-17. DOI: 10.1016/j.tre.2015.06.006  1
2015 Cui Q, Li Y. The change trend and influencing factors of civil aviation safety efficiency: The case of Chinese airline companies Safety Science. 75: 56-63. DOI: 10.1016/j.ssci.2015.01.015  1
2015 Zhang L, Qian G, Liu Z, Cui Q, Wang H, Yao H. Adsorption and separation properties of n-pentane/isopentane on ZIF-8 Separation and Purification Technology. DOI: 10.1016/j.seppur.2015.10.037  0.8
2015 Wang W, Chen Q, Cui Q, Ma J, Zhang H. Preparation of c-axis oriented YBa2Cu3O7 polycrystalline ceramics by sol-gel method Physica C: Superconductivity and Its Applications. 511: 1-3. DOI: 10.1016/j.physc.2015.02.003  0.4
2015 Chao S, Cui Q, Wang K, Bai Z, Yang L, Qiao J. Template-free synthesis of hierarchical yolk-shell Co and N codoped porous carbon microspheres with enhanced performance for oxygen reduction reaction Journal of Power Sources. 288: 128-135. DOI: 10.1016/j.jpowsour.2015.04.049  0.56
2015 Shu Y, Rajathurai K, Gao F, Cui Q, Gu Z. Synthesis and thermal properties of low melting temperature tin/indium (Sn/In) lead-free nanosolders and their melting behavior in a vapor flux Journal of Alloys and Compounds. 626: 391-400. DOI: 10.1016/j.jallcom.2014.11.173  0.36
2015 Cui Q, Li Y. Evaluating energy efficiency for airlines: An application of VFB-DEA Journal of Air Transport Management. 44: 34-41. DOI: 10.1016/j.jairtraman.2015.02.008  1
2015 Cui QL, Shen SL, Xu YS, Wu HN, Yin ZY. Mitigation of geohazards during deep excavations in karst regions with caverns: A case study Engineering Geology. 195: 16-27. DOI: 10.1016/j.enggeo.2015.05.024  0.68
2015 Ma L, Yang H, Wu Q, Yin Y, Liu Z, Cui Q, Wang H. Study on adsorption refrigeration performance of MIL-101-isobutane working pair Energy. 93: 786-794. DOI: 10.1016/j.energy.2015.09.097  0.8
2015 Chao S, Cui Q, Bai Z, Wang K, Yang L. Template-free synthesis of hierarchical peanut-like Co and N codoped porous carbon with highly efficient catalytic activity for oxygen reduction reaction Electrochimica Acta. DOI: 10.1016/j.electacta.2015.01.212  0.56
2015 Cui Q, Wang X, Li C, Cai Y, Liu Q, Li R. Ecosystem service value analysis of CO2 management based on land use change of Zoige alpine peat wetland, Tibetan Plateau Ecological Engineering. 76: 158-165. DOI: 10.1016/j.ecoleng.2014.03.035  0.48
2015 Zhong L, Cui Q. On a relation between the atom-bond connectivity and the first geometric-arithmetic indices Discrete Applied Mathematics. 185: 249-253. DOI: 10.1016/j.dam.2014.11.027  0.4
2015 Cui Q, Deng L, Zhang X. Pointwise second-order necessary conditions for optimal control problems evolved on Riemannian manifolds Comptes Rendus Mathematique. DOI: 10.1016/j.crma.2015.09.032  0.36
2015 Lin G, Zhuang Q, Cui Q, Wang H, Yao H. Synthesis and adsorption property of zeolite FAU/LTA from lithium slag with utilization of mother liquid Chinese Journal of Chemical Engineering. 23: 1768-1773. DOI: 10.1016/j.cjche.2015.10.001  0.8
2015 Meng X, Yu Q, Gao Y, Zhang Q, Li C, Cui Q. Enhanced propene/ethene selectivity for methanol conversion over pure silica zeolite: Role of hydrogen-bonded silanol groups Catalysis Communications. 61: 67-71. DOI: 10.1016/j.catcom.2014.12.011  0.52
2015 Deng Q, Jiang X, Cui Q, Zhang L. Strategic design of cost savings guarantee in energy performance contracting under uncertainty Applied Energy. 139: 68-80. DOI: 10.1016/j.apenergy.2014.11.027  0.6
2015 Cui Q, Li Y. An empirical study on energy efficiency improving capacity: the case of fifteen countries Energy Efficiency. DOI: 10.1007/s12053-015-9337-3  1
2015 Xiao ZH, Cui QQ, Li XL, Wang HL, Zhou Q. Ionothermal synthesis for Mg-doped LiMn1.5Ni0.5O4 spinel with structural stability and high-rate performance Ionics. 21: 1261-1267. DOI: 10.1007/s11581-014-1305-y  0.76
2015 Cui Q, Bai FS, Gao B, Liu TY. Global Optimization for Advertisement Selection in Sponsored Search Journal of Computer Science and Technology. 30: 295-310. DOI: 10.1007/s11390-015-1523-4  0.48
2015 Cheng CH, Guo RY, Cui Q, Song HB, Tang LF. Synthesis and catalytic activity of N-heterocyclic carbene metal carbonyl complexes based on 1-[2-(pyrazol-1-yl)phenyl]imidazole Transition Metal Chemistry. 40: 297-304. DOI: 10.1007/s11243-015-9917-2  0.32
2015 Cui QL, Wu HN, Shen SL, Xu YS, Ye GL. Chinese karst geology and measures to prevent geohazards during shield tunnelling in karst region with caves Natural Hazards. DOI: 10.1007/s11069-014-1585-6  0.68
2015 du W, Jiao D, Yang J, Yao Z, Lu J, Liu D, Cui Q. Two-Frequency Mutual Coherence Function of a Gaussian Beam Pulse Propagated Through Non-Kolmogorov Turbulent Atmosphere Journal of Russian Laser Research. DOI: 10.1007/s10946-015-9482-3  0.72
2015 Zhang Q, Chen S, Zhang L, Cui Q, Liu Z, Wang H. Dynamic adsorption of n-heptane/methylhexane/2,2,4-trimethylpentane and refining of high purity n-heptane on UiO-66 Journal of Porous Materials. DOI: 10.1007/s10934-015-0067-x  0.8
2015 Zhang Q, Wu L, Cui Q. The balanced credibility estimators with correlation risk and inflation factor Statistical Papers. DOI: 10.1007/s00362-015-0719-6  0.88
2015 Zhang Z, Wu S, Zhang J, Tang S, Hu C, Li Y, Jiang L, Cui Q. Well-aligned carbon nitride nanorods: the template-free synthesis and their optical and thermal properties Applied Physics a: Materials Science and Processing. DOI: 10.1007/s00339-015-9128-x  0.64
2015 Chen L, Xu G, Jing P, Geng M, Duan S, Cui Q, Zhou L. Indoor purification of formaldehyde by optimized lettuce leaf Chinese Journal of Environmental Engineering. 9: 2941-2946.  0.44
2015 Huang D, Song X, Tian J, Cui Q, Yang K. Effects of clinical pathways in stroke management: A meta-analysis Neurology Asia. 20: 335-342.  0.48
2014 Zhang L, Yethiraj A, Cui Q. Free Energy Calculations for the Peripheral Binding of Proteins/Peptides to an Anionic Membrane. 1. Implicit Membrane Models. Journal of Chemical Theory and Computation. 10: 2845-59. PMID 26586509 DOI: 10.1021/ct500218p  0.76
2014 Zheng X, Gorovoy IR, Mao J, Jin J, Chen X, Cui QN. Recurrent ocular involvement in pediatric atypical hemolytic uremic syndrome. Journal of Pediatric Ophthalmology and Strabismus. 51: e62-5. PMID 25608228 DOI: 10.3928/01913913-20140923-03  0.72
2014 Yang Z, Liu W, Cui Q, Niu W, Li H, Zhao X, Wei X, Wang X, Huang S, Dong D, Lu S, Bai C, Li Y, Huang L, Yuan J. Prevalence and detection of Stenotrophomonas maltophilia carrying metallo-β-lactamase blaL1 in Beijing, China. Frontiers in Microbiology. 5: 692. PMID 25538701 DOI: 10.3389/fmicb.2014.00692  1
2014 Kong X, Zhao D, Lin G, Zhou J, Cui Q. Recurrent painful perianal subcutaneous angiomatoid fibrous histiocytoma: a case report and review of the literature. Medicine. 93: e202. PMID 25526437 DOI: 10.1097/MD.0000000000000202  0.6
2014 Yang Q, Li JS, Liu YF, Han JL, Qi YL, Li YS, Cui Q, Wang WP. [Dynamic studies on photosynthetic and growth characteristics of Angecila dahurcia]. Zhongguo Zhong Yao Za Zhi. 39: 2881-5. PMID 25507548  0.52
2014 Wolf S, Freier E, Cui Q, Gerwert K. Infrared spectral marker bands characterizing a transient water wire inside a hydrophobic membrane protein. The Journal of Chemical Physics. 141: 22D524. PMID 25494795 DOI: 10.1063/1.4902237  1
2014 Yang Q, Li JS, Liu YF, Han JL, Qi YL, Li YS, Cui Q, Wang WP. [Dynamic studies on photosynthetic and growth characteristics of Angecila dahurcia]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 39: 2881-5. PMID 25423826  0.52
2014 Bai X, Yang R, Sun X, Qian J, Zhu H, Cui Q, Wang C, Liu Y. [Interstitial pneumonitis related to rituximab therapy in primary macroglobulinemia: a case report and literatures review]. Zhonghua Xue Ye Xue Za Zhi = Zhonghua Xueyexue Zazhi. 35: 1022-3. PMID 25417884 DOI: 10.3760/cma.j.issn.0253-2727.2014.11.017  0.76
2014 Odoh SO, Bondarevsky GD, Karpus J, Cui Q, He C, Spezia R, Gagliardi L. UO₂²⁺ uptake by proteins: understanding the binding features of the super uranyl binding protein and design of a protein with higher affinity. Journal of the American Chemical Society. 136: 17484-94. PMID 25411020 DOI: 10.1021/ja5087563  0.4
2014 Liu Y, Liu S, Zhou S, Su X, Wang C, Cao Y, Jiang W, Cui Q, Wang L. [A modified porous tantalum implant technology for osteonecrosis of the femoral head: survival and prognostic evaluations of conversion into total hip arthroplasty]. Zhonghua Yi Xue Za Zhi. 94: 2429-33. PMID 25400049  0.6
2014 Zheng X, Gorovoy IR, Mao J, Jin J, Chen X, Cui QN. Recurrent ocular involvement in pediatric atypical hemolytic uremic syndrome. Journal of Pediatric Ophthalmology and Strabismus. 51: e62-5. PMID 25347082 DOI: 10.3928/01913913-20140923-03  0.72
2014 Song XP, Tian JH, Cui Q, Zhang TT, Yang KH, Ding GW. Could clinical pathways improve the quality of care in patients with gastrointestinal cancer? A meta-analysis. Asian Pacific Journal of Cancer Prevention : Apjcp. 15: 8361-6. PMID 25339029  0.48
2014 Zhang X, Liu C, Cui Q. [Portable ECG measuring system with non-contact electrode]. Zhongguo Yi Liao Qi Xie Za Zhi = Chinese Journal of Medical Instrumentation. 38: 168-70, 185. PMID 25241508  0.56
2014 Liang Y, Lei Z, Zhang H, Xu Z, Cui Q, Xu ZC. Toll-like receptor 4 is associated with seizures following ischemia with hyperglycemia. Brain Research. 1590: 75-84. PMID 25223904 DOI: 10.1016/j.brainres.2014.09.020  0.44
2014 Liu X, Zhou J, Yu T, Chen C, Cheng Q, Sengupta K, Huang Y, Li H, Liu C, Wang Y, Posocco P, Wang M, Cui Q, Giorgio S, Fermeglia M, et al. Adaptive amphiphilic dendrimer-based nanoassemblies as robust and versatile siRNA delivery systems. Angewandte Chemie (International Ed. in English). 53: 11822-7. PMID 25219970 DOI: 10.1002/anie.201406764  0.64
2014 Yuan C, Chai A, Cui Q, Ye E, Zhang J. Complete mitochondrial genome of Acrossocheilus stenotaeniatus (Osteichthyes: Cyprinidae). Mitochondrial Dna. 1-2. PMID 25208180 DOI: 10.3109/19401736.2014.933325  0.6
2014 Li HY, Ruan YW, Ren CR, Cui Q, So KF. Mechanisms of secondary degeneration after partial optic nerve transection. Neural Regeneration Research. 9: 565-74. PMID 25206855 DOI: 10.4103/1673-5374.130093  0.4
2014 Shen QT, Schuh AL, Zheng Y, Quinney K, Wang L, Hanna M, Mitchell JC, Otegui MS, Ahlquist P, Cui Q, Audhya A. Structural analysis and modeling reveals new mechanisms governing ESCRT-III spiral filament assembly. The Journal of Cell Biology. 206: 763-77. PMID 25202029 DOI: 10.1083/jcb.201403108  1
2014 Wang H, Ji R, Meng J, Cui Q, Zou W, Li L, Wang G, Sun L, Li Z, Huo L, Fan Y, Penny DJ. Functional changes in pulmonary arterial endothelial cells associated with BMPR2 mutations. Plos One. 9: e106703. PMID 25187962 DOI: 10.1371/journal.pone.0106703  0.8
2014 Goyal P, Qian HJ, Irle S, Lu X, Roston D, Mori T, Elstner M, Cui Q. Molecular simulation of water and hydration effects in different environments: challenges and developments for DFTB based models. The Journal of Physical Chemistry. B. 118: 11007-27. PMID 25166899 DOI: 10.1021/jp503372v  1
2014 Cui Q, Nussinov R. Making biomolecular simulations accessible in the post-Nobel Prize era. Plos Computational Biology. 10: e1003786. PMID 25122142 DOI: 10.1371/journal.pcbi.1003786  1
2014 Zhang ZB, Hou L, Pan Q, Wang XM, Cui QH, Tian JZ, Ma LY. [Advances in high-throughput transcriptome research of traditional Chinese medicines]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 39: 1553-8. PMID 25095359  0.6
2014 Ren WH, Zhang LM, Liu HQ, Gao L, Chen C, Qiang C, Wang XL, Liu CY, Li SM, Huang C, Qi H, Zhi KQ. Protein overexpression of CIRP and TLR4 in oral squamous cell carcinoma: an immunohistochemical and clinical correlation analysis. Medical Oncology (Northwood, London, England). 31: 120. PMID 25027624 DOI: 10.1007/s12032-014-0120-7  0.36
2014 Hu M, Li J, Zhang B, Cui Q, Wei S, Yu H. Regional distribution of halogenated organophosphate flame retardants in seawater samples from three coastal cities in China. Marine Pollution Bulletin. 86: 569-74. PMID 24974164 DOI: 10.1016/j.marpolbul.2014.06.009  0.88
2014 Chu YL, Gong YD, Su ZH, Yu HN, Cui Q, Jiang HY, Qu HM. Relationship between tyrosine phosphorylation and protein expression of insulin receptor and insulin resistance in gestational diabetes mellitus. Journal of Huazhong University of Science and Technology. Medical Sciences = Hua Zhong Ke Ji Da Xue Xue Bao. Yi Xue Ying De Wen Ban = Huazhong Keji Daxue Xuebao. Yixue Yingdewen Ban. 34: 393-7. PMID 24939305 DOI: 10.1007/s11596-014-1289-x  0.64
2014 Cui Q, Elstner M. Density functional tight binding: values of semi-empirical methods in an ab initio era. Physical Chemistry Chemical Physics : Pccp. 16: 14368-77. PMID 24850383 DOI: 10.1039/c4cp00908h  1
2014 Gao L, Wang X, Wang X, Zhang L, Qiang C, Chang S, Ren W, Li S, Yang Y, Tong D, Chen C, Li Z, Song T, Zhi K, Huang C. IGF-1R, a target of let-7b, mediates crosstalk between IRS-2/Akt and MAPK pathways to promote proliferation of oral squamous cell carcinoma. Oncotarget. 5: 2562-74. PMID 24810113  0.64
2014 Gaus M, Lu X, Elstner M, Cui Q. Parameterization of DFTB3/3OB for Sulfur and Phosphorus for Chemical and Biological Applications. Journal of Chemical Theory and Computation. 10: 1518-1537. PMID 24803865 DOI: 10.1021/ct401002w  1
2014 Tan X, Xiao H, Han Y, Hong X, Cui Q, Zhou Z. Encoded protein from ycbR gene of enterohemorrhagic Escherichia coli O157:H7 associated with adherence to HEp-2 cells. Microbiological Research. 169: 855-61. PMID 24680289 DOI: 10.1016/j.micres.2014.03.001  0.76
2014 Mori T, Hamers RJ, Pedersen JA, Cui Q. Integrated Hamiltonian sampling: a simple and versatile method for free energy simulations and conformational sampling. The Journal of Physical Chemistry. B. 118: 8210-20. PMID 24641518 DOI: 10.1021/jp501339t  1
2014 Chai A, Zhang J, Cui Q, Yuan C. Mitochondrial genome of Onychostoma macrolepis (Osteichthyes: Cyprinidae). Mitochondrial Dna. PMID 24548011 DOI: 10.3109/19401736.2014.883605  0.6
2014 Jia C, Wu Z, Lietz CB, Liang Z, Cui Q, Li L. Gas-phase ion isomer analysis reveals the mechanism of peptide sequence scrambling. Analytical Chemistry. 86: 2917-24. PMID 24313304 DOI: 10.1021/ac401578p  1
2014 Xu Z, Yang Y, Wang Z, Mkhonto D, Shang C, Liu ZP, Cui Q, Sahai N. Small molecule-mediated control of hydroxyapatite growth: free energy calculations benchmarked to density functional theory. Journal of Computational Chemistry. 35: 70-81. PMID 24272540 DOI: 10.1002/jcc.23474  1
2014 Xu D, Cui Q, Guo H. Quantum mechanical/molecular mechanical studies of zinc hydrolases International Reviews in Physical Chemistry. 33: 1-41. DOI: 10.1080/0144235X.2014.889378  1
2014 Zhang L, Yethiraj A, Cui Q. Free energy calculations for the peripheral binding of proteins/peptides to an anionic membrane. 1. implicit membrane models Journal of Chemical Theory and Computation. 10: 2845-2859. DOI: 10.1021/ct500218p  1
2014 Gaus M, Cui Q, Elstner M. Density functional tight binding: Application to organic and biological molecules Wiley Interdisciplinary Reviews: Computational Molecular Science. 4: 49-61. DOI: 10.1002/wcms.1156  1
2013 Jarecki BW, Zheng S, Zhang L, Li X, Zhou X, Cui Q, Tang W, Chanda B. Tethered spectroscopic probes estimate dynamic distances with subnanometer resolution in voltage-dependent potassium channels. Biophysical Journal. 105: 2724-32. PMID 24359744 DOI: 10.1016/j.bpj.2013.11.010  1
2013 Goyal P, Lu J, Yang S, Gunner MR, Cui Q. Changing hydration level in an internal cavity modulates the proton affinity of a key glutamate in cytochrome c oxidase. Proceedings of the National Academy of Sciences of the United States of America. 110: 18886-91. PMID 24198332 DOI: 10.1073/pnas.1313908110  1
2013 Wu Z, Cui Q, Yethiraj A. Why do arginine and lysine organize lipids differently? Insights from coarse-grained and atomistic simulations. The Journal of Physical Chemistry. B. 117: 12145-56. PMID 24024591 DOI: 10.1021/jp4068729  1
2013 Sundlass NK, Eller CH, Cui Q, Raines RT. Contribution of electrostatics to the binding of pancreatic-type ribonucleases to membranes. Biochemistry. 52: 6304-12. PMID 23947917 DOI: 10.1021/bi400619m  1
2013 Zhu X, Cui J, Feng Y, Fa Y, Zhang J, Cui Q. Metabolic adaption of ethanol-tolerant Clostridium thermocellum. Plos One. 8: e70631. PMID 23936233 DOI: 10.1371/journal.pone.0070631  0.96
2013 Hou G, Cui Q. Stabilization of different types of transition states in a single enzyme active site: QM/MM analysis of enzymes in the alkaline phosphatase superfamily. Journal of the American Chemical Society. 135: 10457-69. PMID 23786365 DOI: 10.1021/ja403293d  1
2013 Pang X, Han K, Cui Q. A simple but effective modeling strategy for structural properties of non-heme Fe(II) sites in proteins: test of force field models and application to proteins in the AlkB family. Journal of Computational Chemistry. 34: 1620-35. PMID 23666816 DOI: 10.1002/jcc.23305  1
2013 Fu Y, Jia G, Pang X, Wang RN, Wang X, Li CJ, Smemo S, Dai Q, Bailey KA, Nobrega MA, Han KL, Cui Q, He C. FTO-mediated formation of N6-hydroxymethyladenosine and N6-formyladenosine in mammalian RNA. Nature Communications. 4: 1798. PMID 23653210 DOI: 10.1038/ncomms2822  1
2013 Ruther RE, Cui Q, Hamers RJ. Conformational disorder enhances electron transfer through alkyl monolayers: ferrocene on conductive diamond. Journal of the American Chemical Society. 135: 5751-61. PMID 23530540 DOI: 10.1021/ja312680p  1
2013 Daily MD, Yu H, Phillips GN, Cui Q. Allosteric activation transitions in enzymes and biomolecular motors: insights from atomistic and coarse-grained simulations. Topics in Current Chemistry. 337: 139-64. PMID 23468286 DOI: 10.1007/128_2012_409  1
2013 Yang L, Chao C, Tang W, Wang Z, Yu H, Cui Q, Zhou Z. [Effect of cryopreservation method on islets specific T cell responses in type 1 diabetic patient]. Zhong Nan Da Xue Xue Bao. Yi Xue Ban = Journal of Central South University. Medical Sciences. 38: 169-75. PMID 23456066 DOI: 10.3969/j.issn.1672-7347.2013.02.010  1
2013 Yoo J, Jackson MB, Cui Q. A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores. Biophysical Journal. 104: 841-52. PMID 23442963 DOI: 10.1016/j.bpj.2012.12.043  1
2013 Lu X, Cui Q. Charging free energy calculations using the Generalized Solvent Boundary Potential (GSBP) and periodic boundary condition: a comparative analysis using ion solvation and oxidation free energy in proteins. The Journal of Physical Chemistry. B. 117: 2005-18. PMID 23347181 DOI: 10.1021/jp309877z  1
2013 Yoo J, Cui Q. Membrane-mediated protein-protein interactions and connection to elastic models: a coarse-grained simulation analysis of gramicidin A association. Biophysical Journal. 104: 128-38. PMID 23332065 DOI: 10.1016/j.bpj.2012.11.3813  1
2013 Yoo J, Cui Q. Three-dimensional stress field around a membrane protein: atomistic and coarse-grained simulation analysis of gramicidin A. Biophysical Journal. 104: 117-27. PMID 23332064 DOI: 10.1016/j.bpj.2012.11.3812  1
2013 Mori T, Hamers RJ, Pedersen JA, Cui Q. An explicit consideration of desolvation is critical to binding free energy calculations of charged molecules at ionic surfaces Journal of Chemical Theory and Computation. 9: 5059-5069. DOI: 10.1021/ct400487e  1
2013 Cui Q, Zhang L, Wu Z, Yethiraj A. Generation and sensing of membrane curvature: Where materials science and biophysics meet Current Opinion in Solid State and Materials Science. 17: 164-174. DOI: 10.1016/j.cossms.2013.06.002  1
2012 Hou G, Zhu X, Elstner M, Cui Q. A modified QM/MM Hamiltonian with the Self-Consistent-Charge Density-Functional-Tight-Binding Theory for highly charged QM regions. Journal of Chemical Theory and Computation. 8: 4293-4304. PMID 23275762 DOI: 10.1021/ct300649f  1
2012 Gaus M, Cui Q, Elstner M. DFTB3: Extension of the self-consistent-charge density-functional tight-binding method (SCC-DFTB). Journal of Chemical Theory and Computation. 7: 931-948. PMID 23204947 DOI: 10.1021/ct100684s  1
2012 Xia F, Rudack T, Cui Q, Kötting C, Gerwert K. Detailed structure of the H2PO4(-)-guanosine diphosphate intermediate in Ras-GAP decoded from FTIR experiments by biomolecular simulations. Journal of the American Chemical Society. 134: 20041-4. PMID 23181905 DOI: 10.1021/ja310496e  1
2012 Zienau J, Cui Q. Implementation of the solvent macromolecule boundary potential and application to model and realistic enzyme systems. The Journal of Physical Chemistry. B. 116: 12522-34. PMID 22985044 DOI: 10.1021/jp308218m  1
2012 Zhao X, Liu Q, Du B, Li P, Cui Q, Han X, Du B, Yan D, Zhu X. A novel accessory molecule Trim59 involved in cytotoxicity of BCG-activated macrophages. Molecules and Cells. 34: 263-70. PMID 22949172 DOI: 10.1007/s10059-012-0089-z  0.96
2012 Daily MD, Makowski L, Phillips GN, Cui Q. Large-scale motions in the adenylate kinase solution ensemble: coarse-grained simulations and comparison with solution X-ray scattering. Chemical Physics. 396: 84-91. PMID 22711968 DOI: 10.1016/j.chemphys.2011.08.015  1
2012 Xing Y, Nukaya M, Satyshur KA, Jiang L, Stanevich V, Korkmaz EN, Burdette L, Kennedy GD, Cui Q, Bradfield CA. Identification of the Ah-receptor structural determinants for ligand preferences. Toxicological Sciences : An Official Journal of the Society of Toxicology. 129: 86-97. PMID 22659362 DOI: 10.1093/toxsci/kfs194  0.72
2012 Su L, Zhu X, Wang Z, Cheng X, Wang Y, Yuan C, Chen Z, Ma C, Li F, Zhou Q, Cui Q. In situ observation of multiple phase transitions in low-melting ionic liquid [BMIM][BF4] under high pressure up to 30 GPa. The Journal of Physical Chemistry. B. 116: 2216-22. PMID 22239600 DOI: 10.1021/jp2108939  0.96
2012 Mondal J, Zhu X, Cui Q, Yethiraj A. Sequence-dependent pKa shift induced by molecular self-assembly: insights from computer simulation. The Journal of Physical Chemistry. B. 116: 491-5. PMID 22121949 DOI: 10.1021/jp2071953  1
2012 Hou G, Cui Q. QM/MM analysis suggests that Alkaline Phosphatase (AP) and nucleotide pyrophosphatase/phosphodiesterase slightly tighten the transition state for phosphate diester hydrolysis relative to solution: implication for catalytic promiscuity in the AP superfamily. Journal of the American Chemical Society. 134: 229-46. PMID 22097879 DOI: 10.1021/ja205226d  1
2012 Li W, Rong R, Zhao S, Zhu X, Zhang K, Xiong X, Yu X, Cui Q, Li S, Chen L, Cai J, Du J. Proteomic analysis of metabolic, cytoskeletal and stress response proteins in human heart failure. Journal of Cellular and Molecular Medicine. 16: 59-71. PMID 21545686 DOI: 10.1111/j.1582-4934.2011.01336.x  0.96
2012 Meuwly M, Cui Q. Protein functional dynamics: From femtoseconds to milliseconds Chemical Physics. 396: 1-2. DOI: 10.1016/j.chemphys.2011.09.021  1
2012 Riccardi D, Zhu X, Goyal P, Yang S, Hou G, Cui Q. Toward molecular models of proton pumping: Challenges, methods and relevant applications Science China Chemistry. 55: 3-18. DOI: 10.1007/s11426-011-4458-9  1
2011 Wu Z, Cui Q, Yethiraj A. A New Coarse-Grained Force Field for Membrane-Peptide Simulations. Journal of Chemical Theory and Computation. 7: 3793-802. PMID 26598270 DOI: 10.1021/ct200593t  0.76
2011 Wu Y, Ma L, Cheley S, Bayley H, Cui Q, Chapman ER. Permeation of styryl dyes through nanometer-scale pores in membranes. Biochemistry. 50: 7493-502. PMID 21815625 DOI: 10.1021/bi2006288  1
2011 Daily MD, Phillips GN, Cui Q. Interconversion of functional motions between mesophilic and thermophilic adenylate kinases. Plos Computational Biology. 7: e1002103. PMID 21779157 DOI: 10.1371/journal.pcbi.1002103  1
2011 Goyal P, Ghosh N, Phatak P, Clemens M, Gaus M, Elstner M, Cui Q. Proton storage site in bacteriorhodopsin: new insights from quantum mechanics/molecular mechanics simulations of microscopic pK(a) and infrared spectra. Journal of the American Chemical Society. 133: 14981-97. PMID 21761868 DOI: 10.1021/ja201568s  1
2011 Yang S, Cui Q. Glu-286 rotation and water wire reorientation are unlikely the gating elements for proton pumping in cytochrome C oxidase. Biophysical Journal. 101: 61-9. PMID 21723815 DOI: 10.1016/j.bpj.2011.05.004  1
2011 Yang Y, Mkhonto D, Cui Q, Sahai N. Theoretical study of bone sialoprotein in bone biomineralization. Cells, Tissues, Organs. 194: 182-7. PMID 21597272 DOI: 10.1159/000324648  1
2011 Clemens M, Phatak P, Cui Q, Bondar AN, Elstner M. Role of Arg82 in the early steps of the bacteriorhodopsin proton-pumping cycle. The Journal of Physical Chemistry. B. 115: 7129-35. PMID 21561116 DOI: 10.1021/jp201865k  1
2011 Goyal P, Elstner M, Cui Q. Application of the SCC-DFTB method to neutral and protonated water clusters and bulk water. The Journal of Physical Chemistry. B. 115: 6790-805. PMID 21526802 DOI: 10.1021/jp202259c  1
2011 Yang M, Wang FD, Han B, Wang SJ, Zhou DB, Pan H, Zhao YQ, Cui QC, Ma L, Chng WJ, Shen T. Castleman's disease presenting as prolonged anemia and growth retardation: a case report and literature review. Acta Haematologica. 125: 125-9. PMID 21150179 DOI: 10.1159/000322119  1
2011 Ma L, Sundlass NK, Raines RT, Cui Q. Disruption and formation of surface salt bridges are coupled to DNA binding by the integration host factor: a computational analysis. Biochemistry. 50: 266-75. PMID 21121696 DOI: 10.1021/bi101096k  1
2011 Liu C, Wu ZZ, Shu CL, Li DF, Zeng YJ, Cui Q, Jiang WH. Experimental investigation of HGF inhibiting glial scar in vitro. Cellular and Molecular Neurobiology. 31: 259-68. PMID 21076937 DOI: 10.1007/s10571-010-9616-7  0.44
2011 Wu Z, Cui Q, Yethiraj A. Driving force for the association of hydrophobic peptides: The importance of electrostatic interactions in coarse-grained water models Journal of Physical Chemistry Letters. 2: 1794-1798. DOI: 10.1021/jz2006622  1
2011 Wu Z, Cui Q, Yethiraj A. A new coarse-grained force field for membrane-peptide simulations Journal of Chemical Theory and Computation. 7: 3793-3802. DOI: 10.1021/ct200593t  1
2010 Rao L, Cui Q, Xu X. Electronic properties and desolvation penalties of metal ions plus protein electrostatics dictate the metal binding affinity and selectivity in the copper efflux regulator. Journal of the American Chemical Society. 132: 18092-102. PMID 21128636 DOI: 10.1021/ja103742k  1
2010 Yi C, Jia G, Hou G, Dai Q, Zhang W, Zheng G, Jian X, Yang CG, Cui Q, He C. Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase. Nature. 468: 330-3. PMID 21068844 DOI: 10.1038/nature09497  1
2010 Riccardi D, Cui Q, Phillips GN. Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse X-ray scattering Biophysical Journal. 99: 2616-2625. PMID 20959103 DOI: 10.1016/j.bpj.2010.08.013  1
2010 Mondal J, Zhu X, Cui Q, Yethiraj A. Sequence-dependent interaction of β-peptides with membranes. The Journal of Physical Chemistry. B. 114: 13585-92. PMID 20882985 DOI: 10.1021/jp1070242  1
2010 Yoo J, Cui Q. Chemical versus mechanical perturbations on the protonation state of arginine in complex lipid membranes: insights from microscopic pKa calculations. Biophysical Journal. 99: 1529-38. PMID 20816065 DOI: 10.1016/j.bpj.2010.06.048  1
2010 Hou G, Zhu X, Cui Q. An implicit solvent model for SCC-DFTB with Charge-Dependent Radii. Journal of Chemical Theory and Computation. 6: 2303-2314. PMID 20711513 DOI: 10.1021/ct1001818  1
2010 Wu Z, Cui Q, Yethiraj A. A new coarse-grained model for water: the importance of electrostatic interactions. The Journal of Physical Chemistry. B. 114: 10524-9. PMID 20701383 DOI: 10.1021/jp1019763  1
2010 Daily MD, Phillips GN, Cui Q. Many local motions cooperate to produce the adenylate kinase conformational transition. Journal of Molecular Biology. 400: 618-31. PMID 20471396 DOI: 10.1016/j.jmb.2010.05.015  1
2010 Yang Y, Cui Q, Sahai N. How does bone sialoprotein promote the nucleation of hydroxyapatite? A molecular dynamics study using model peptides of different conformations. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 9848-59. PMID 20438109 DOI: 10.1021/la100192z  1
2010 Van Wynsberghe AW, Cui Q. Conservation and variation of structural flexibility in protein families. Structure (London, England : 1993). 18: 281-3. PMID 20223210 DOI: 10.1016/j.str.2010.02.001  1
2010 Zhu X, Koenig P, Hoffmann M, Yethiraj A, Cui Q. Establishing effective simulation protocols for beta- and alpha/beta-peptides. III. Molecular mechanical model for acyclic beta-amino acids. Journal of Computational Chemistry. 31: 2063-77. PMID 20175215 DOI: 10.1002/jcc.21493  1
2010 Ma L, Pegram L, Record MT, Cui Q. Preferential interactions between small solutes and the protein backbone: a computational analysis. Biochemistry. 49: 1954-62. PMID 20121154 DOI: 10.1021/bi9020082  1
2010 Riccardi D, Yang S, Cui Q. Proton transfer function of carbonic anhydrase: Insights from QM/MM simulations Biochimica Et Biophysica Acta - Proteins and Proteomics. 1804: 342-351. PMID 19679196 DOI: 10.1016/j.bbapap.2009.07.026  1
2010 Mondal J, Zhu X, Cui Q, Yethiraj A. Self-assembly of β-Peptides: Insight from the pair and many-body free energy of association Journal of Physical Chemistry C. 114: 13551-13556. DOI: 10.1021/jp1040772  1
2010 Yang W, Cui Q, Min D, Li H. QM/MM Alchemical free energy simulations. Challenges and recent developments Annual Reports in Computational Chemistry. 6: 51-62. DOI: 10.1016/S1574-1400(10)06004-4  1
2009 Tang Y, Chen X, Yoo J, Yethiraj A, Cui Q. NUMERICAL SIMULATION OF NANOINDENTATION AND PATCH CLAMP EXPERIMENTS ON MECHANOSENSITIVE CHANNELS OF LARGE CONDUCTANCE IN ESCHERICHIA COLI. Shi Yan Li Xue = Journal of Experimental Mechanics / Zhongguo Li Xue Xue Hui, Zhongguo Ke Xue Ji Shu Da Xue Zhu Ban. 49: 35-46. PMID 21874098 DOI: 10.1007/s11340-007-9060-x  1
2009 Mao R, Cui Q, Zhao Q, Ai GY, Li LJ, Zeng DH. [Soil microbial biomass and activity in relation to stand age of poplar shelterbelts]. Ying Yong Sheng Tai Xue Bao = the Journal of Applied Ecology / Zhongguo Sheng Tai Xue Xue Hui, Zhongguo Ke Xue Yuan Shenyang Ying Yong Sheng Tai Yan Jiu Suo Zhu Ban. 20: 2079-84. PMID 20030125  0.68
2009 Yoo J, Cui Q. Curvature generation and pressure profile modulation in membrane by lysolipids: insights from coarse-grained simulations. Biophysical Journal. 97: 2267-76. PMID 19843459 DOI: 10.1016/j.bpj.2009.07.051  1
2009 Li Z, Wang ZG, Bian C, Chen XD, Li JW, Chen X, Han B, Hou GF, Chu J, Cui Q. Interferon regulatory factor-1 exerts inhibitory effect on neointimal formation after vascular injury. Chinese Medical Sciences Journal = Chung-Kuo I HsüEh K'O HsüEh Tsa Chih / Chinese Academy of Medical Sciences. 24: 91-6. PMID 19618605  0.72
2009 Yang Y, Cui Q. The hydrolysis activity of adenosine triphosphate in myosin: a theoretical analysis of anomeric effects and the nature of the transition state. The Journal of Physical Chemistry. A. 113: 12439-46. PMID 19534504 DOI: 10.1021/jp902949f  1
2009 Brooks BR, Brooks CL, Mackerell AD, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, et al. CHARMM: the biomolecular simulation program. Journal of Computational Chemistry. 30: 1545-614. PMID 19444816 DOI: 10.1002/jcc.21287  1
2009 Ma L, Yethiraj A, Chen X, Cui Q. A computational framework for mechanical response of macromolecules: application to the salt concentration dependence of DNA bendability. Biophysical Journal. 96: 3543-54. PMID 19413960 DOI: 10.1016/j.bpj.2009.01.047  1
2009 Yang Y, Cui Q. Does water relay play an important role in phosphoryl transfer reactions? Insights from theoretical study of a model reaction in water and tert-butanol. The Journal of Physical Chemistry. B. 113: 4930-9. PMID 19292432 DOI: 10.1021/jp810755p  1
2009 Ghosh N, Prat-Resina X, Gunner MR, Cui Q. Microscopic pKa analysis of Glu286 in cytochrome c oxidase (Rhodobacter sphaeroides): toward a calibrated molecular model. Biochemistry. 48: 2468-85. PMID 19243111 DOI: 10.1021/bi8021284  1
2009 Riccardi D, Cui Q, Phillips GN. Application of elastic network models to proteins in the crystalline state. Biophysical Journal. 96: 464-75. PMID 19167297 DOI: 10.1016/j.bpj.2008.10.010  1
2009 Riccardi D, Cui Q, Phillips GN. Application of elastic network models to proteins in the crystalline state (Biophysical Journal (2009) 96, (464-475)) Biophysical Journal. 96: 2548. DOI: 10.1016/j.bpj.2009.02.007  1
2008 Yang Y, Yu H, York D, Elstner M, Cui Q. Description of phosphate hydrolysis reactions with the Self-Consistent-Charge Density-Functional-Tight-Binding (SCC-DFTB) theory. 1. Parameterization. Journal of Chemical Theory and Computation. 4: 2067-2084. PMID 19352441 DOI: 10.1021/ct800330d  1
2008 Phatak P, Ghosh N, Yu H, Cui Q, Elstner M. Amino acids with an intermolecular proton bond as proton storage site in bacteriorhodopsin. Proceedings of the National Academy of Sciences of the United States of America. 105: 19672-7. PMID 19064907 DOI: 10.1073/pnas.0810712105  1
2008 Tang Y, Yoo J, Yethiraj A, Cui Q, Chen X. Mechanosensitive channels: insights from continuum-based simulations. Cell Biochemistry and Biophysics. 52: 1-18. PMID 18787764 DOI: 10.1007/s12013-008-9024-5  1
2008 Yang Y, Yu H, Cui Q. Extensive conformational transitions are required to turn on ATP hydrolysis in myosin. Journal of Molecular Biology. 381: 1407-20. PMID 18619975 DOI: 10.1016/j.jmb.2008.06.071  1
2008 Cui Q, Karplus M. Allostery and cooperativity revisited. Protein Science : a Publication of the Protein Society. 17: 1295-307. PMID 18560010 DOI: 10.1110/ps.03259908  1
2008 Ghosh N, Cui Q. pKa of residue 66 in Staphylococal nuclease. I. Insights from QM/MM simulations with conventional sampling. The Journal of Physical Chemistry. B. 112: 8387-97. PMID 18540669 DOI: 10.1021/jp800168z  1
2008 Luo J, Xia Q, Zhang R, Lv C, Zhang W, Wang Y, Cui Q, Liu L, Cai R, Qian C. Treatment of cancer with a novel dual-targeted conditionally replicative adenovirus armed with mda-7/IL-24 gene. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 14: 2450-7. PMID 18413837 DOI: 10.1158/1078-0432.CCR-07-4596  0.6
2008 Zhu X, Koenig P, Gellman SH, Yethiraj A, Cui Q. Establishing effective simulation protocols for beta- and alpha/beta-peptides. II. Molecular mechanical (MM) model for a cyclic beta-residue. The Journal of Physical Chemistry. B. 112: 5439-48. PMID 18402479 DOI: 10.1021/jp077601y  1
2008 Chen X, Cui Q, Tang Y, Yoo J, Yethiraj A. Gating mechanisms of mechanosensitive channels of large conductance, I: a continuum mechanics-based hierarchical framework. Biophysical Journal. 95: 563-80. PMID 18390626 DOI: 10.1529/biophysj.107.128488  1
2008 Tang Y, Yoo J, Yethiraj A, Cui Q, Chen X. Gating mechanisms of mechanosensitive channels of large conductance, II: systematic study of conformational transitions. Biophysical Journal. 95: 581-96. PMID 18390625 DOI: 10.1529/biophysj.107.128496  1
2008 Riccardi D, König P, Guo H, Cui Q. Proton transfer in carbonic anhydrase is controlled by electrostatics rather than the orientation of the acceptor. Biochemistry. 47: 2369-78. PMID 18247480 DOI: 10.1021/bi701950j  1
2008 Yoo J, Cui Q. Does arginine remain protonated in the lipid membrane? Insights from microscopic pKa calculations. Biophysical Journal. 94: L61-3. PMID 18199662 DOI: 10.1529/biophysj.107.122945  1
2008 Hoerter JM, Otte KM, Gellman SH, Cui Q, Stahl SS. Discovery and mechanistic study of Al(III)-catalyzed transamidation of tertiary amides. Journal of the American Chemical Society. 130: 647-54. PMID 18092780 DOI: 10.1021/ja0762994  1
2008 Cui Q, Jiang W, Wang Y, Lv C, Luo J, Zhang W, Lin F, Yin Y, Cai R, Wei P, Qian C. Transfer of suppressor of cytokine signaling 3 by an oncolytic adenovirus induces potential antitumor activities in hepatocellular carcinoma. Hepatology (Baltimore, Md.). 47: 105-12. PMID 17935223 DOI: 10.1002/hep.21951  0.8
2008 Casey CP, Johnson JB, Singer SW, Cui Q. Hydrogen elimination from a hydroxycyclopentadienyl ruthenium(II) hydride: Study of hydrogen activation in a ligand-metal bifunctional hydrogenation catalyst (Journal of the American Chemical Society (2005) 127, (3100-3109)) Journal of the American Chemical Society. 130: 1110. DOI: 10.1021/ja710851z  1
2007 Nam K, Cui Q, Gao J, York DM. Specific Reaction Parametrization of the AM1/d Hamiltonian for Phosphoryl Transfer Reactions:  H, O, and P Atoms. Journal of Chemical Theory and Computation. 3: 486-504. PMID 26637030 DOI: 10.1021/ct6002466  0.84
2007 Zhu X, Yethiraj A, Cui Q. Establishing Effective Simulation Protocols for β- and α/β-Mixed Peptides. I. QM and QM/MM Models. Journal of Chemical Theory and Computation. 3: 1538-49. PMID 26633224 DOI: 10.1021/ct600352e  0.96
2007 Zhang W, Cai R, Luo J, Wang Y, Cui Q, Wei X, Zhang H, Qian C. The oncolytic adenovirus targeting to TERT and RB pathway induced specific and potent anti-tumor efficacy in vitro and in vivo for hepatocellular carcinoma. Cancer Biology & Therapy. 6: 1726-32. PMID 18281783  0.6
2007 Yu H, Cui Q. The vibrational spectra of protonated water clusters: a benchmark for self-consistent-charge density-functional tight binding. The Journal of Chemical Physics. 127: 234504. PMID 18154397 DOI: 10.1063/1.2806992  1
2007 Yang Y, Yu H, York D, Cui Q, Elstner M. Extension of the self-consistent-charge density-functional tight-binding method: third-order expansion of the density functional theory total energy and introduction of a modified effective coulomb interaction. The Journal of Physical Chemistry. A. 111: 10861-73. PMID 17914769 DOI: 10.1021/jp074167r  1
2007 Xu D, Guo H, Cui Q. Antibiotic deactivation by a dizinc beta-lactamase: mechanistic insights from QM/MM and DFT studies. Journal of the American Chemical Society. 129: 10814-22. PMID 17691780 DOI: 10.1021/ja072532m  1
2007 Ma L, Cui Q. Activation mechanism of a signaling protein at atomic resolution from advanced computations. Journal of the American Chemical Society. 129: 10261-8. PMID 17655236 DOI: 10.1021/ja073059f  1
2007 Cai ZL, Lopez P, Reimers JR, Cui Q, Elstner M. Application of the computationally efficient self-consistent-charge density-functional tight-binding method to magnesium-containing molecules. The Journal of Physical Chemistry. A. 111: 5743-50. PMID 17555305 DOI: 10.1021/jp071701m  0.76
2007 Riccardi D, Cui Q. pK a analysis for the zinc-bound water in human carbonic anhydrase II: Benchmark for "multiscale" QM/MM simulations and mechanistic implications Journal of Physical Chemistry A. 111: 5703-5711. PMID 17506534 DOI: 10.1021/jp070699w  1
2007 Yang Y, Cui Q. Interactions between phosphate and water in solution: a natural bond orbital based analysis in a QM/MM framework. The Journal of Physical Chemistry. B. 111: 3999-4002. PMID 17391023 DOI: 10.1021/jp070706g  1
2007 Xu D, Guo H, Cui Q. Antibiotic binding to dizinc beta-lactamase L1 from Stenotrophomonas maltophilia: SCC-DFTB/CHARMM and DFT studies. The Journal of Physical Chemistry. A. 111: 5630-6. PMID 17388313 DOI: 10.1021/jp068746s  1
2007 Yu H, Ma L, Yang Y, Cui Q. Mechanochemical coupling in the myosin motor domain. II. Analysis of critical residues. Plos Computational Biology. 3: e23. PMID 17305418 DOI: 10.1371/journal.pcbi.0030023  1
2007 Kondrashov DA, Van Wynsberghe AW, Bannen RM, Cui Q, Phillips GN. Protein structural variation in computational models and crystallographic data. Structure (London, England : 1993). 15: 169-77. PMID 17292835 DOI: 10.1016/j.str.2006.12.006  1
2007 Yu H, Ma L, Yang Y, Cui Q. Mechanochemical coupling in the myosin motor domain. I. Insights from equilibrium active-site simulations. Plos Computational Biology. 3: e21. PMID 17291159 DOI: 10.1371/journal.pcbi.0030021  1
2007 Kissounko DA, Hoerter JM, Guzei IA, Cui Q, Gellman SH, Stahl SS. TiIV-mediated reactions between primary amines and secondary carboxamides: amidine formation versus transamidation. Journal of the American Chemical Society. 129: 1776-83. PMID 17284008 DOI: 10.1021/ja0650293  1
2006 Riccardi D, König P, Prat-Resina X, Yu H, Elstner M, Frauenheim T, Cui Q. "Proton holes" in long-range proton transfer reactions in solution and enzymes: A theoretical analysis. Journal of the American Chemical Society. 128: 16302-11. PMID 17165785 DOI: 10.1021/ja065451j  1
2006 Ma L, Cui Q. The temperature dependence of salt-protein association is sequence specific. Biochemistry. 45: 14466-72. PMID 17128985 DOI: 10.1021/bi0613067  1
2006 Van Wynsberghe AW, Cui Q. Interpreting correlated motions using normal mode analysis. Structure (London, England : 1993). 14: 1647-53. PMID 17098190 DOI: 10.1016/j.str.2006.09.003  0.92
2006 Formaneck MS, Cui Q. The use of a generalized born model for the analysis of protein conformational transitions: a comparative study with explicit solvent simulations for chemotaxis Y protein (CheY). Journal of Computational Chemistry. 27: 1923-43. PMID 17019722 DOI: 10.1002/jcc.20489  1
2006 Kondrashov DA, Cui Q, Phillips GN. Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data. Biophysical Journal. 91: 2760-7. PMID 16891367 DOI: 10.1529/biophysj.106.085894  1
2006 Formaneck MS, Ma L, Cui Q. Effects of temperature and salt concentration on the structural stability of human lymphotactin: insights from molecular simulations. Journal of the American Chemical Society. 128: 9506-17. PMID 16848488 DOI: 10.1021/ja061620o  1
2006 Tang Y, Cao G, Chen X, Yoo J, Yethiraj A, Cui Q. A finite element framework for studying the mechanical response of macromolecules: application to the gating of the mechanosensitive channel MscL. Biophysical Journal. 91: 1248-63. PMID 16731564 DOI: 10.1529/biophysj.106.085985  1
2006 Riccardi D, Schaefer P, Yang Y, Yu H, Ghosh N, Prat-Resina X, König P, Li G, Xu D, Guo H, Elstner M, Cui Q. Development of effective quantum mechanical/molecular mechanical (QM/MM) methods for complex biological processes. The Journal of Physical Chemistry. B. 110: 6458-69. PMID 16570942 DOI: 10.1021/jp056361o  1
2006 Formaneck MS, Ma L, Cui Q. Reconciling the "old" and "new" views of protein allostery: a molecular simulation study of chemotaxis Y protein (CheY). Proteins. 63: 846-67. PMID 16475196 DOI: 10.1002/prot.20893  1
2006 König PH, Ghosh N, Hoffmann M, Elstner M, Tajkhorshid E, Frauenheim T, Cui Q. Toward theoretical analysis of long-range proton transfer kinetics in biomolecular pumps. The Journal of Physical Chemistry. A. 110: 548-63. PMID 16405327 DOI: 10.1021/jp052328q  0.96
2005 Riccardi D, Schaefer P, Cui Q. PK a calculations in solution and proteins with QM/MM free energy perturbation simulations: A quantitative test of QM/MM protocols Journal of Physical Chemistry B. 109: 17715-17733. PMID 16853267 DOI: 10.1021/jp0517192  1
2005 Casey CP, Bikzhanova GA, Cui Q, Guzei IA. Reduction of imines by hydroxycyclopentadienyl ruthenium hydride: intramolecular trapping evidence for hydride and proton transfer outside the coordination sphere of the metal. Journal of the American Chemical Society. 127: 14062-71. PMID 16201828 DOI: 10.1021/ja053956o  1
2005 Range K, Riccardi D, Cui Q, Elstner M, York DM. Benchmark calculations of proton affinities and gas-phase basicities of molecules important in the study of biological phosphoryl transfer. Physical Chemistry Chemical Physics : Pccp. 7: 3070-9. PMID 16186912 DOI: 10.1039/b504941e  1
2005 Van Wynsberghe AW, Cui Q. Comparison of mode analyses at different resolutions applied to nucleic acid systems. Biophysical Journal. 89: 2939-49. PMID 16100266 DOI: 10.1529/biophysj.105.065664  0.92
2005 Schaefer P, Riccardi D, Cui Q. Reliable treatment of electrostatics in combined QM/MM simulation of macromolecules. The Journal of Chemical Physics. 123: 014905. PMID 16035867 DOI: 10.1063/1.1940047  0.96
2005 Li G, Cui Q. Direct determination of reaction paths and stationary points on potential of mean force surfaces. Journal of Molecular Graphics & Modelling. 24: 82-93. PMID 16005650 DOI: 10.1016/j.jmgm.2005.06.001  1
2005 Casey CP, Johnson JB, Singer SW, Cui Q. Hydrogen elimination from a hydroxycyclopentadienyl ruthenium(II) hydride: study of hydrogen activation in a ligand-metal bifunctional hydrogenation catalyst. Journal of the American Chemical Society. 127: 3100-9. PMID 15740149 DOI: 10.1021/ja043460r  1
2004 Riccardi D, Li G, Cui Q. Importance of van der Waals Interactions in QM/MM Simulations. The Journal of Physical Chemistry. B. 108: 6467-78. PMID 18950136 DOI: 10.1021/jp037992q  0.96
2004 Xu D, Wei Y, Wu J, Dunaway-Mariano D, Guo H, Cui Q, Gao J. QM/MM studies of the enzyme-catalyzed dechlorination of 4-chlorobenzoyl-CoA provide insight into reaction energetics. Journal of the American Chemical Society. 126: 13649-58. PMID 15493922 DOI: 10.1021/ja0460211  1
2004 Van Wynsberghe A, Li G, Cui Q. Normal-mode analysis suggests protein flexibility modulation throughout RNA polymerase's functional cycle. Biochemistry. 43: 13083-96. PMID 15476402 DOI: 10.1021/bi049738+  0.68
2004 Cui Q, Li G, Ma J, Karplus M. A normal mode analysis of structural plasticity in the biomolecular motor F(1)-ATPase. Journal of Molecular Biology. 340: 345-72. PMID 15201057 DOI: 10.1016/j.jmb.2004.04.044  1
2004 Xu D, Guo H, Gao J, Cui Q. A QM/MM study of a nucleophilic aromatic substitution reaction catalyzed by 4-chlorobenzoyl-CoA dehalogenase. Chemical Communications (Cambridge, England). 892-3. PMID 15045116 DOI: 10.1039/b401159g  0.84
2004 Li G, Cui Q. Analysis of functional motions in Brownian molecular machines with an efficient block normal mode approach: myosin-II and Ca2+ -ATPase. Biophysical Journal. 86: 743-63. PMID 14747312 DOI: 10.1016/S0006-3495(04)74152-1  1
2003 Li G, Cui Q. What is so special about Arg 55 in the catalysis of cyclophilin A? insights from hybrid QM/MM simulations. Journal of the American Chemical Society. 125: 15028-38. PMID 14653737 DOI: 10.1021/ja0367851  1
2003 Cui Q, Karplus M. Catalysis and specificity in enzymes: a study of triosephosphate isomerase and comparison with methyl glyoxal synthase. Advances in Protein Chemistry. 66: 315-72. PMID 14631822 DOI: 10.1016/S0065-3233(03)66008-0  1
2003 Guo H, Cui Q, Lipscomb WN, Karplus M. Understanding the role of active-site residues in chorismate mutase catalysis from molecular-dynamics simulations. Angewandte Chemie (International Ed. in English). 42: 1508-11. PMID 12698486 DOI: 10.1002/anie.200219878  1
2003 Elstner M, Cui Q, Munih P, Kaxiras E, Frauenheim T, Karplus M. Modeling zinc in biomolecules with the self consistent charge-density functional tight binding (SCC-DFTB) method: applications to structural and energetic analysis. Journal of Computational Chemistry. 24: 565-81. PMID 12632471 DOI: 10.1002/jcc.10201  1
2003 Yang W, Gao YQ, Cui Q, Ma J, Karplus M. The missing link between thermodynamics and structure in F1-ATPase. Proceedings of the National Academy of Sciences of the United States of America. 100: 874-9. PMID 12552084 DOI: 10.1073/pnas.0337432100  1
2002 Zhang X, Harrison DH, Cui Q. Functional specificities of methylglyoxal synthase and triosephosphate isomerase: a combined QM/MM analysis. Journal of the American Chemical Society. 124: 14871-8. PMID 12475328  0.56
2002 Li G, Cui Q. A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase. Biophysical Journal. 83: 2457-74. PMID 12414680 DOI: 10.1016/S0006-3495(02)75257-0  1
2002 Ma J, Flynn TC, Cui Q, Leslie AG, Walker JE, Karplus M. A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase. Structure (London, England : 1993). 10: 921-31. PMID 12121647 DOI: 10.1016/S0969-2126(02)00789-X  1
2002 Cui Q, Karplus M. Quantum mechanics/molecular mechanics studies of triosephosphate isomerase-catalyzed reactions: effect of geometry and tunneling on proton-transfer rate constants. Journal of the American Chemical Society. 124: 3093-124. PMID 11902900 DOI: 10.1021/ja0118439  1
2001 Guo H, Cui Q, Lipscomb WN, Karplus M. Substrate conformational transitions in the active site of chorismate mutase: their role in the catalytic mechanism. Proceedings of the National Academy of Sciences of the United States of America. 98: 9032-7. PMID 11481470 DOI: 10.1073/pnas.141230998  1
2001 Cui Q, Karplus M. Triosephosphate isomerase: a theoretical comparison of alternative pathways. Journal of the American Chemical Society. 123: 2284-90. PMID 11456876 DOI: 10.1021/ja002886c  1
1996 Yu H, Ren H, Miao Q, Cui Q, Zhang Z, Xu L. Pulmonary leiomyosarcoma--report of three cases. Chinese Medical Sciences Journal = Chung-Kuo I HsüEh K'O HsüEh Tsa Chih / Chinese Academy of Medical Sciences. 11: 191-4. PMID 9387409  0.88
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