Luis M. Alcazar-Roman, Ph.D. - Related publications

Affiliations: 
2001 Yale University, New Haven, CT 
Area:
reactions catalyzed by transition metal complexes
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Hsu DJ, Leshchev D, Kosheleva I, Kohlstedt KL, Chen LX. Unfolding bovine α-lactalbumin with T-jump: Characterizing disordered intermediates via time-resolved x-ray solution scattering and molecular dynamics simulations. The Journal of Chemical Physics. 154: 105101. PMID 33722011 DOI: 10.1063/5.0039194   
2021 Zou J, Xiao S, Simmerling C, Raleigh DP. Quantitative Analysis of Protein Unfolded State Energetics: Experimental and Computational Studies Demonstrate That Non-Native Side-Chain Interactions Stabilize Local Native Backbone Structure. The Journal of Physical Chemistry. B. PMID 33779182 DOI: 10.1021/acs.jpcb.0c08922   
2021 Badasyan A, Valant M, Grdadolnik J, Uversky VN. The Finite Size Effects and Two-State Paradigm of Protein Folding. International Journal of Molecular Sciences. 22. PMID 33671738 DOI: 10.3390/ijms22042184   
2021 Zhuravlev PI, Hinczewski M, Thirumalai D. Low Force Unfolding of a Single-Domain Protein by Parallel Pathways. The Journal of Physical Chemistry. B. PMID 33565314 DOI: 10.1021/acs.jpcb.0c11308   
2021 Seifi B, Wallin S. The C-terminal domain of transcription factor RfaH: Folding, fold switching and energy landscape. Biopolymers. e23420. PMID 33521926 DOI: 10.1002/bip.23420   
2021 Bhatia S, Krishnamoorthy G, Udgaonkar JB. Resolving Site-Specific Heterogeneity of the Unfolded State under Folding Conditions. The Journal of Physical Chemistry Letters. 3295-3302. PMID 33764778 DOI: 10.1021/acs.jpclett.1c00098   
2021 Kim J, Mandal R, Hilty C. 2D NMR spectroscopy of refolding RNase Sa using polarization transfer from hyperpolarized water. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 326: 106942. PMID 33713971 DOI: 10.1016/j.jmr.2021.106942   
2021 Narayan M. The Formation of Native Disulfide Bonds: Treading a Fine Line in Protein Folding. The Protein Journal. PMID 33765253 DOI: 10.1007/s10930-021-09976-7   
2021 Levengood JD, Peterson J, Tolbert BS, Roche J. Thermodynamic stability of hnRNP A1 low complexity domain revealed by high-pressure NMR. Proteins. PMID 33550645 DOI: 10.1002/prot.26058   
2021 Khamari L, Pramanik U, Shekhar S, Mohanakumar S, Mukherjee S. Thermal Reversibility and Structural Stability in Lysozyme Induced by Epirubicin Hydrochloride. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33703900 DOI: 10.1021/acs.langmuir.1c00179   
2021 Mondal B, Nagesh J, Reddy G. Double Domain Swapping in Human γC and γD Crystallin Drives Early Stages of Aggregation. The Journal of Physical Chemistry. B. PMID 33566611 DOI: 10.1021/acs.jpcb.0c07833   
2021 Nasreen K, Parray ZA, Shamsi A, Ahmad F, Ahmed A, Malik A, Lakhrm NA, Hassan MI, Islam A. Crowding Milleu stabilizes apo-myoglobin against chemical-induced denaturation: Dominance of hardcore repulsions in the heme devoid protein. International Journal of Biological Macromolecules. PMID 33744250 DOI: 10.1016/j.ijbiomac.2021.03.089   
2021 Nasreen K, Parray ZA, Shamsi A, Ahmad F, Ahmed A, Malik A, Lakhrm NA, Hassan MI, Islam A. Crowding Milleu stabilizes apo-myoglobin against chemical-induced denaturation: Dominance of hardcore repulsions in the heme devoid protein. International Journal of Biological Macromolecules. PMID 33744250 DOI: 10.1016/j.ijbiomac.2021.03.089   
2021 Dawson WM, Lang EJM, Rhys GG, Shelley KL, Williams C, Brady RL, Crump MP, Mulholland AJ, Woolfson DN. Structural resolution of switchable states of a de novo peptide assembly. Nature Communications. 12: 1530. PMID 33750792 DOI: 10.1038/s41467-021-21851-8   
2021 Lindsay RJ, Mansbach RA, Gnanakaran S, Shen T. Effects of pH on an IDP conformational ensemble explored by molecular dynamics simulation. Biophysical Chemistry. 271: 106552. PMID 33581430 DOI: 10.1016/j.bpc.2021.106552   
2021 Gianni S, Freiberger MI, Jemth P, Ferreiro DU, Wolynes PG, Fuxreiter M. Fuzziness and Frustration in the Energy Landscape of Protein Folding, Function, and Assembly. Accounts of Chemical Research. PMID 33550810 DOI: 10.1021/acs.accounts.0c00813   
2021 Timr S, Sterpone F. Stabilizing or Destabilizing: Simulations of Chymotrypsin Inhibitor 2 under Crowding Reveal Existence of a Crossover Temperature. The Journal of Physical Chemistry Letters. 1741-1746. PMID 33570420 DOI: 10.1021/acs.jpclett.0c03626   
2021 Zou T, Woodrum BW, Halloran N, Campitelli P, Bobkov AA, Ghirlanda G, Ozkan SB. Local Interactions That Contribute Minimal Frustration Determine Foldability. The Journal of Physical Chemistry. B. PMID 33687216 DOI: 10.1021/acs.jpcb.1c00364   
2021 Gopi S, Lukose B, Naganathan AN. Diverse Native Ensembles Dictate the Differential Functional Responses of Nuclear Receptor Ligand-Binding Domains. The Journal of Physical Chemistry. B. PMID 33818099 DOI: 10.1021/acs.jpcb.1c00972   
2021 Megalathan A, Wijesinghe KM, Ranson L, Dhakal S. Single-Molecule Analysis of Nanocircle-Embedded I-Motifs under Crowding. The Journal of Physical Chemistry. B. PMID 33629846 DOI: 10.1021/acs.jpcb.0c09640   
2021 Roche R, Bhattacharya S, Bhattacharya D. Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins. Plos Computational Biology. 17: e1008753. PMID 33621244 DOI: 10.1371/journal.pcbi.1008753   
2021 Fernandes DD, Neale C, Gomes GW, Li Y, Malik A, Pandey A, Orazietti AP, Wang X, Ye L, Scott Prosser R, Gradinaru CC. Ligand modulation of the conformational dynamics of the A adenosine receptor revealed by single-molecule fluorescence. Scientific Reports. 11: 5910. PMID 33723285 DOI: 10.1038/s41598-021-84069-0   
2021 Fernandes DD, Neale C, Gomes GW, Li Y, Malik A, Pandey A, Orazietti AP, Wang X, Ye L, Scott Prosser R, Gradinaru CC. Ligand modulation of the conformational dynamics of the A adenosine receptor revealed by single-molecule fluorescence. Scientific Reports. 11: 5910. PMID 33723285 DOI: 10.1038/s41598-021-84069-0   
2021 Yang Z, Muccio DD, Melo N, Atigadda VR, Renfrow MB. Stability of the Retinoid X Receptor-α Homodimer in the Presence and Absence of Rexinoid and Coactivator Peptide. Biochemistry. PMID 33792309 DOI: 10.1021/acs.biochem.0c00865   
2021 Dandekar BR, Ahalawat N, Mondal J. Reconciling Conformational Heterogeneity and Substrate Recognition in Cytochrome P450. Biophysical Journal. PMID 33675756 DOI: 10.1016/j.bpj.2021.02.040   
2021 Petrosyan R, Patra S, Rezajooei N, Garen CR, Woodside MT. Unfolded and intermediate states of PrP play a key role in the mechanism of action of an antiprion chaperone. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33619087 DOI: 10.1073/pnas.2010213118   
2021 Liu Y, Parks FC, Sheetz EG, Chen CH, Flood AH. Polarity-Tolerant Chloride Binding in Foldamer Capsules by Programmed Solvent-Exclusion. Journal of the American Chemical Society. PMID 33596052 DOI: 10.1021/jacs.0c12562   
2021 Jin Y, Kotler JLM, Wang S, Huang B, Halpin JC, Street TO. The ER chaperones BiP and Grp94 regulate the formation of insulin-like growth factor 2 (IGF2) oligomers. Journal of Molecular Biology. 166963. PMID 33811917 DOI: 10.1016/j.jmb.2021.166963   
2021 Freiberger MI, Wolynes PG, Ferreiro DU, Fuxreiter M. Frustration in Fuzzy Protein Complexes Leads to Interaction Versatility. The Journal of Physical Chemistry. B. 125: 2513-2520. PMID 33667107 DOI: 10.1021/acs.jpcb.0c11068   
2021 Hays JM, Boland E, Kasson PM. Inference of Joint Conformational Distributions from Separately Acquired Experimental Measurements. The Journal of Physical Chemistry Letters. 12: 1606-1611. PMID 33596657 DOI: 10.1021/acs.jpclett.0c03623   
2021 Kabir ML, Wang F, Clayton AHA. Red-Edge Excitation Shift Spectroscopy (REES): Application to Hidden Bound States of Ligands in Protein-Ligand Complexes. International Journal of Molecular Sciences. 22. PMID 33806656 DOI: 10.3390/ijms22052582   
2021 Staheli CF, Barney J, Clark TR, Bowles M, Jeppesen B, Oblinsky DG, Steffensen MB, Dean JC. Spectroscopic and Photophysical Investigation of Model Dipyrroles Common to Bilins: Exploring Natural Design for Steering Torsion to Divergent Functions. Frontiers in Chemistry. 9: 628852. PMID 33681146 DOI: 10.3389/fchem.2021.628852   
2021 Sellner M, Fischer A, Don CG, Smieško M. Conformational Landscape of Cytochrome P450 Reductase Interactions. International Journal of Molecular Sciences. 22. PMID 33498551 DOI: 10.3390/ijms22031023   
2021 Rocha MA, Sprague-Piercy MA, Kwok AO, Roskamp KW, Martin RW. Chemical Properties Determine Solubility and Stability in βγ-Crystallins of the Eye Lens. Chembiochem : a European Journal of Chemical Biology. PMID 33569867 DOI: 10.1002/cbic.202000739   
2021 Li RC, Wong MY, DiChiara AS, Hosseini AS, Shoulders MD. Collagen's enigmatic, highly conserved -glycan has an essential proteostatic function. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33674390 DOI: 10.1073/pnas.2026608118   
2021 Majikes JM, Patrone PN, Kearsley AJ, Zwolak M, Liddle JA. Failure Mechanisms in DNA Self-Assembly: Barriers to Single-Fold Yield. Acs Nano. PMID 33565312 DOI: 10.1021/acsnano.0c10114   
2021 Sagar A, Jeffries CM, Petoukhov MV, Svergun DI, Bernadó P. Comment on the Optimal Parameters to Derive Intrinsically Disordered Protein Conformational Ensembles from Small-Angle X-ray Scattering Data Using the Ensemble Optimization Method. Journal of Chemical Theory and Computation. PMID 33725442 DOI: 10.1021/acs.jctc.1c00014   
2021 Buchholz I, McDonnell T, Nestler P, Tharad S, Kulke M, Radziszewska A, Ripoll VM, Schmidt F, Hammer E, Toca-Herrera JL, Rahman A, Delcea M. Specific domain V reduction of beta-2-glycoprotein I induces protein flexibility and alters pathogenic antibody binding. Scientific Reports. 11: 4542. PMID 33633190 DOI: 10.1038/s41598-021-84021-2   
2021 Teixeira AL, Alves NA. The high stability of the three-helix bundle UBA domain of p62 protein as revealed by molecular dynamics simulations. Journal of Molecular Modeling. 27: 102. PMID 33665744 DOI: 10.1007/s00894-021-04698-0   
2021 Feng X, Li F, Ding M, Zhang R, Shi T, Jiang W. Molecular dynamic simulation: Structural insights of multi-stranded curdlan in aqueous solution. Carbohydrate Polymers. 261: 117844. PMID 33766340 DOI: 10.1016/j.carbpol.2021.117844   
2021 Martin EW, Thomasen FE, Milkovic NM, Cuneo MJ, Grace CR, Nourse A, Lindorff-Larsen K, Mittag T. Interplay of folded domains and the disordered low-complexity domain in mediating hnRNPA1 phase separation. Nucleic Acids Research. PMID 33577679 DOI: 10.1093/nar/gkab063   
2021 Kaplan AR, Olson R, Alexandrescu AT. Protein Yoga: Conformational Versatility of the Hemolysin II C-terminal Domain Detailed by NMR Structures for Multiple States. Protein Science : a Publication of the Protein Society. PMID 33733504 DOI: 10.1002/pro.4066   
2021 Hu H, Wang Q, Du J, Liu Z, Ding Y, Xue H, Zhou C, Feng L, Zhang N. Aha1 Exhibits Distinctive Dynamics Behavior and Chaperone-Like Activity. Molecules (Basel, Switzerland). 26. PMID 33808352 DOI: 10.3390/molecules26071943   
2021 Taneva SG, Krumova S, Bogár F, Kincses A, Stoichev S, Todinova S, Danailova A, Horváth J, Násztor Z, Kelemen L, Dér A. Insights into graphene oxide interaction with human serum albumin in isolated state and in blood plasma. International Journal of Biological Macromolecules. 175: 19-29. PMID 33508363 DOI: 10.1016/j.ijbiomac.2021.01.151   
2021 Tadi S, Misra SK, Sharp JS. Inline Liquid Chromatography-Fast Photochemical Oxidation of Proteins for Targeted Structural Analysis of Conformationally Heterogeneous Mixtures. Analytical Chemistry. 93: 3510-3516. PMID 33560821 DOI: 10.1021/acs.analchem.0c04872   
2021 Crean RM, Biler M, van der Kamp MW, Hengge AC, Kamerlin SCL. Loop Dynamics and Enzyme Catalysis in Protein Tyrosine Phosphatases. Journal of the American Chemical Society. PMID 33661624 DOI: 10.1021/jacs.0c11806   
2021 Yu JC, Mietzsch M, Singh A, Jimenez Ybargollin A, Kailasan S, Chipman P, Bhattacharya N, Fakhiri J, Grimm D, Kapoor A, Kučinskaitė-Kodzė I, Žvirblienė A, Söderlund-Venermo M, McKenna R, Agbandje-McKenna M. Characterization of the GBoV1 Capsid and Its Antibody Interactions. Viruses. 13. PMID 33672786 DOI: 10.3390/v13020330   
2021 Lapenta F, Aupič J, Vezzoli M, Strmšek Ž, Da Vela S, Svergun DI, Carazo JM, Melero R, Jerala R. Self-assembly and regulation of protein cages from pre-organised coiled-coil modules. Nature Communications. 12: 939. PMID 33574245 DOI: 10.1038/s41467-021-21184-6   
2021 Dias D'Andréa É, Sebastian Retel J, Diehl A, Schmieder P, Oschkinat H, Ricardo Pires J. NMR structure and dynamics of Q4DY78, a conserved kinetoplasid-specific protein from Trypanosoma cruzi. Journal of Structural Biology. 107715. PMID 33705979 DOI: 10.1016/j.jsb.2021.107715   
2021 Estrada Pabón JD, Haddox HK, Van Aken G, Pendleton IM, Eramian H, Singer JM, Schrier J. The Role of Configurational Entropy in Miniprotein Stability. The Journal of Physical Chemistry. B. PMID 33739115 DOI: 10.1021/acs.jpcb.0c09888