| Year |
Citation |
Score |
| 2022 |
Chenevert M, Miller B, Karkoutli A, Rusnak A, Lott SE, Atallah J. The early embryonic transcriptome of a Hawaiian Drosophila picture-wing fly shows evidence of altered gene expression and novel gene evolution. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 35322942 DOI: 10.1002/jez.b.23129 |
0.57 |
|
| 2021 |
Panta M, Mishra A, Hoque MT, Atallah J. ClassifyTE: A stacking based prediction of hierarchical classification of transposable elements. Bioinformatics (Oxford, England). PMID 33682878 DOI: 10.1093/bioinformatics/btab146 |
0.354 |
|
| 2020 |
LeBien J, McCollam G, Atallah J. An in silico model of LINE-1-mediated neoplastic evolution. Bioinformatics (Oxford, England). PMID 32365170 DOI: 10.1093/bioinformatics/btaa279 |
0.336 |
|
| 2019 |
Kalay G, Atallah J, Sierra NC, Tang AM, Crofton AE, Murugesan MK, Wykoff-Clary S, Lott SE. Evolution of Larval Segment Position across 12 Drosophila Species. Evolution; International Journal of Organic Evolution. PMID 31886902 DOI: 10.1111/Evo.13911 |
0.696 |
|
| 2018 |
Atallah J, Lott SE. Evolution of maternal and zygotic mRNA complements in the early Drosophila embryo. Plos Genetics. 14: e1007838. PMID 30557299 DOI: 10.1371/journal.pgen.1007838 |
0.687 |
|
| 2016 |
Jasper WC, Linksvayer TA, Atallah J, Friedman D, Chiu JC, Johnson BR. Large Scale Coding Sequence Change Underlies the Evolution of Postdevelopmental Novelty in Honey Bees. Molecular Biology and Evolution. PMID 26912809 DOI: 10.1093/Molbev/Msw022 |
0.506 |
|
| 2015 |
Jasper WC, Linksvayer TA, Atallah J, Friedman D, Chiu JC, Johnson BR. Large-scale coding sequence change underlies the evolution of postdevelopmental novelty in honey bees. Molecular Biology and Evolution. 32: 334-46. PMID 25351750 DOI: 10.1093/molbev/msu292 |
0.419 |
|
| 2014 |
Shelomi M, Jasper WC, Atallah J, Kimsey LS, Johnson BR. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Bmc Genomics. 15: 917. PMID 25331961 DOI: 10.1186/1471-2164-15-917 |
0.344 |
|
| 2014 |
Malagón JN, Ahuja A, Sivapatham G, Hung J, Lee J, Muñoz-Gómez SA, Atallah J, Singh RS, Larsen E. Evolution of Drosophila sex comb length illustrates the inextricable interplay between selection and variation. Proceedings of the National Academy of Sciences of the United States of America. 111: E4103-9. PMID 25197080 DOI: 10.1073/Pnas.1322342111 |
0.627 |
|
| 2014 |
Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Research. 24: 1209-23. PMID 24985915 DOI: 10.1101/Gr.159384.113 |
0.706 |
|
| 2014 |
Atallah J, Teixeira L, Salazar R, Zaragoza G, Kopp A. The making of a pest: the evolution of a fruit-penetrating ovipositor in Drosophila suzukii and related species. Proceedings. Biological Sciences / the Royal Society. 281: 20132840. PMID 24573846 DOI: 10.1098/rspb.2013.2840 |
0.596 |
|
| 2014 |
Atallah J, Vurens G, Mavong S, Mutti A, Hoang D, Kopp A. Sex-specific repression of dachshund is required for Drosophila sex comb development. Developmental Biology. 386: 440-7. PMID 24361261 DOI: 10.1016/j.ydbio.2013.12.017 |
0.651 |
|
| 2013 |
Atallah J, Plachetzki DC, Jasper WC, Johnson BR. The utility of shallow RNA-Seq for documenting differential gene expression in genes with high and low levels of expression. Plos One. 8: e84160. PMID 24358338 DOI: 10.1371/journal.pone.0084160 |
0.403 |
|
| 2013 |
Johnson BR, Borowiec ML, Chiu JC, Lee EK, Atallah J, Ward PS. Phylogenomics resolves evolutionary relationships among ants, bees, and wasps. Current Biology : Cb. 23: 2058-62. PMID 24094856 DOI: 10.1016/J.Cub.2013.11.056 |
0.432 |
|
| 2013 |
Johnson BR, Atallah J, Plachetzki DC. The importance of tissue specificity for RNA-seq: highlighting the errors of composite structure extractions. Bmc Genomics. 14: 586. PMID 23985010 DOI: 10.1186/1471-2164-14-586 |
0.366 |
|
| 2012 |
Atallah J, Watabe H, Kopp A. Many ways to make a novel structure: a new mode of sex comb development in Drosophilidae. Evolution & Development. 14: 476-83. PMID 23134206 DOI: 10.1111/ede.12001 |
0.657 |
|
| 2011 |
Larsen EW, Atallah J. Epigenesis, preformation, and the humpty dumpty problem Epigenetics: Linking Genotype and Phenotype in Development and Evolution. 103-115. |
0.402 |
|
| 2009 |
Atallah J, Larsen E. Genotype-phenotype mapping developmental biology confronts the toolkit paradox. International Review of Cell and Molecular Biology. 278: 119-48. PMID 19815178 DOI: 10.1016/S1937-6448(09)78003-7 |
0.611 |
|
| 2009 |
Atallah J, Liu NH, Dennis P, Hon A, Larsen EW. Developmental constraints and convergent evolution in Drosophila sex comb formation. Evolution & Development. 11: 205-18. PMID 19245551 DOI: 10.1111/j.1525-142X.2009.00320.x |
0.648 |
|
| 2009 |
Atallah J, Liu NH, Dennis P, Hon A, Godt D, Larsen EW. Cell dynamics and developmental bias in the ontogeny of a complex sexually dimorphic trait in Drosophila melanogaster. Evolution & Development. 11: 191-204. PMID 19245550 DOI: 10.1111/j.1525-142X.2009.00319.x |
0.57 |
|
| 2004 |
Atallah J, Dworkin I, Cheung U, Greene A, Ing B, Leung L, Larsen E. The environmental and genetic regulation of obake expressivity: morphogenetic fields as evolvable systems. Evolution & Development. 6: 114-22. PMID 15009124 DOI: 10.1111/j.1525-142X.2004.04017.x |
0.698 |
|
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