Amy C. Harms - Publications

Affiliations: 
Leiden University, Leiden, Netherlands 
Area:
BioMedical Metabolomics
Website:
https://www.universiteitleiden.nl/en/staffmembers/amy-harms#tab-1

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Di Zazzo A, Yang W, Coassin M, Micera A, Antonini M, Piccinni F, De Piano M, Kohler I, Harms AC, Hankemeier T, Boinini S, Mashaghi A. Signaling lipids as diagnostic biomarkers for ocular surface cicatrizing conjunctivitis. Journal of Molecular Medicine (Berlin, Germany). PMID 32313985 DOI: 10.1007/S00109-020-01907-W  0.307
2020 Willacey CCW, Karu N, Harms AC, Hankemeier T. Metabolic profiling of material-limited cell samples by dimethylaminophenacyl bromide derivatization with UPLC-MS/MS analysis Microchemical Journal. 159: 105445. DOI: 10.1016/J.Microc.2020.105445  0.37
2019 Drouin N, Kloots T, Schappler J, Rudaz S, Kohler I, Harms A, Lindenburg PW, Hankemeier T. Electromembrane Extraction of Highly Polar Compounds: Analysis of Cardiovascular Biomarkers in Plasma. Metabolites. 10. PMID 31861366 DOI: 10.3390/Metabo10010004  0.374
2019 Vrieling F, Alisjahbana B, Sahiratmadja E, van Crevel R, Harms AC, Hankemeier T, Ottenhoff THM, Joosten SA. Plasma metabolomics in tuberculosis patients with and without concurrent type 2 diabetes at diagnosis and during antibiotic treatment. Scientific Reports. 9: 18669. PMID 31822686 DOI: 10.1038/S41598-019-54983-5  0.304
2019 Laan Tvd, Kloots T, Beekman M, Kindt A, Dubbelman A, Harms A, Duijn CMv, Slagboom PE, Hankemeier T. Fast LC-ESI-MS/MS analysis and influence of sampling conditions for gut metabolites in plasma and serum Scientific Reports. 9: 12370. PMID 31451722 DOI: 10.1038/S41598-019-48876-W  0.367
2019 Willacey CCW, Naaktgeboren M, Lucumi Moreno E, Wegrzyn AB, van der Es D, Karu N, Fleming RMT, Harms AC, Hankemeier T. LC-MS/MS analysis of the central energy and carbon metabolites in biological samples following derivatization by dimethylaminophenacyl bromide. Journal of Chromatography. A. 460413. PMID 31395359 DOI: 10.1016/J.Chroma.2019.460413  0.383
2018 Draper CF, Duisters K, Weger B, Chakrabarti A, Harms AC, Brennan L, Hankemeier T, Goulet L, Konz T, Martin FP, Moco S, van der Greef J. Menstrual cycle rhythmicity: metabolic patterns in healthy women. Scientific Reports. 8: 14568. PMID 30275458 DOI: 10.1038/S41598-018-32647-0  0.314
2018 Schoeman JC, Harms AC, van Weeghel M, Berger R, Vreeken RJ, Hankemeier T. Development and application of a UHPLC-MS/MS metabolomics based comprehensive systemic and tissue-specific screening method for inflammatory, oxidative and nitrosative stress. Analytical and Bioanalytical Chemistry. PMID 29497765 DOI: 10.1007/S00216-018-0912-2  0.314
2017 Kar SK, Jansman AJM, Schokker D, Kruijt L, Harms AC, Wells JM, Smits MA. Amine Metabolism Is Influenced by Dietary Protein Source. Frontiers in Nutrition. 4: 41. PMID 28920057 DOI: 10.3389/Fnut.2017.00041  0.355
2017 van den Brink WJ, Elassaiss-Schaap J, Gonzalez-Amoros B, Harms AC, van der Graaf PH, Hankemeier T, de Lange ECM. Multivariate pharmacokinetic/pharmacodynamic (PKPD) analysis with metabolomics shows multiple effects of remoxipride in rats. European Journal of Pharmaceutical Sciences : Official Journal of the European Federation For Pharmaceutical Sciences. 109: 431-440. PMID 28882765 DOI: 10.1016/J.Ejps.2017.08.031  0.301
2016 Kantae V, Ogino S, Noga M, Harms AC, van Dongen RM, Onderwater GL, van den Maagdenberg AM, Terwindt GM, van der Stelt M, Ferrari MD, Hankemeier T. Quantitative profiling of endocannabinoids and related N-acylethanolamines in human CSF using nano LC-MS/MS. Journal of Lipid Research. PMID 27999147 DOI: 10.1194/Jlr.D070433  0.327
2016 Fu J, Schoeman JC, Harms AC, van Wietmarschen HA, Vreeken RJ, Berger R, Cuppen BV, Lafeber FP, van der Greef J, Hankemeier T. Metabolomics profiling of the free and total oxidised lipids in urine by LC-MS/MS: application in patients with rheumatoid arthritis. Analytical and Bioanalytical Chemistry. PMID 27405874 DOI: 10.1007/S00216-016-9742-2  0.326
2015 Alves RDAM, Dane AD, Harms A, Strassburg K, Seifar RM, Verdijk LB, Kersten S, Berger R, Hankemeier T, Vreeken RJ. Global profiling of the muscle metabolome: method optimization, validation and application to determine exercise-induced metabolic effects Metabolomics. 11: 271-285. DOI: 10.1007/S11306-014-0701-7  0.301
2012 Zhang N, Venkateshwaran M, Boersma M, Harms A, Howes-Podoll M, den Os D, Ané JM, Sussman MR. Metabolomic profiling reveals suppression of oxylipin biosynthesis during the early stages of legume-rhizobia symbiosis. Febs Letters. 586: 3150-8. PMID 22796495 DOI: 10.1016/J.Febslet.2012.06.046  0.548
2009 Huttlin EL, Chen X, Barrett-Wilt GA, Hegeman AD, Halberg RB, Harms AC, Newton MA, Dove WF, Sussman MR. Discovery and validation of colonic tumor-associated proteins via metabolic labeling and stable isotopic dilution. Proceedings of the National Academy of Sciences of the United States of America. 106: 17235-40. PMID 19805096 DOI: 10.1073/Pnas.0909282106  0.7
2009 Wu XJ, Sabat G, Brown JF, Zhang M, Taft A, Peterson N, Harms A, Yoshino TP. Proteomic analysis of Schistosoma mansoni proteins released during in vitro miracidium-to-sporocyst transformation. Molecular and Biochemical Parasitology. 164: 32-44. PMID 19095013 DOI: 10.1016/J.Molbiopara.2008.11.005  0.326
2007 Hegeman AD, Schulte CF, Cui Q, Lewis IA, Huttlin EL, Eghbalnia H, Harms AC, Ulrich EL, Markley JL, Sussman MR. Stable isotope assisted assignment of elemental compositions for metabolomics. Analytical Chemistry. 79: 6912-21. PMID 17708672 DOI: 10.1021/Ac070346T  0.692
2007 Nelson CJ, Huttlin EL, Hegeman AD, Harms AC, Sussman MR. Implications of 15N-metabolic labeling for automated peptide identification in Arabidopsis thaliana. Proteomics. 7: 1279-92. PMID 17443642 DOI: 10.1002/Pmic.200600832  0.701
2007 Huttlin EL, Hegeman AD, Harms AC, Sussman MR. Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana. Molecular & Cellular Proteomics : McP. 6: 860-81. PMID 17293592 DOI: 10.1074/Mcp.M600347-Mcp200  0.714
2007 Huttlin EL, Hegeman AD, Harms AC, Sussman MR. Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy. Journal of Proteome Research. 6: 392-8. PMID 17203984 DOI: 10.1021/Pr0603194  0.66
2006 Nelson CJ, Hegeman AD, Harms AC, Sussman MR. A quantitative analysis of Arabidopsis plasma membrane using trypsin-catalyzed (18)O labeling. Molecular & Cellular Proteomics : McP. 5: 1382-95. PMID 16635983 DOI: 10.1074/Mcp.M500414-Mcp200  0.682
2005 Jeon WB, Aceti DJ, Bingman CA, Vojtik FC, Olson AC, Ellefson JM, McCombs JE, Sreenath HK, Blommel PG, Seder KD, Burns BT, Geetha HV, Harms AC, Sabat G, Sussman MR, et al. High-throughput purification and quality assurance of Arabidopsis thaliana proteins for eukaryotic structural genomics. Journal of Structural and Functional Genomics. 6: 143-7. PMID 16211511 DOI: 10.1007/S10969-005-1908-7  0.555
2004 Hegeman AD, Harms AC, Sussman MR, Bunner AE, Harper JF. An isotope labeling strategy for quantifying the degree of phosphorylation at multiple sites in proteins. Journal of the American Society For Mass Spectrometry. 15: 647-53. PMID 15121193 DOI: 10.1016/J.Jasms.2003.12.019  0.692
2002 Tang KH, Harms A, Frey PA. Identification of a novel pyridoxal 5'-phosphate binding site in adenosylcobalamin-dependent lysine 5,6-aminomutase from Porphyromonas gingivalis. Biochemistry. 41: 8767-76. PMID 12093296 DOI: 10.1021/Bi020255K  0.443
2002 Nelson CJ, Hegeman AD, Harms AC, Sussman MR. Implementation of neutral loss experiments in the characterization of the Arabidopsis thaliana phosphorylome by one and two dimensional LC ESI Q-TOF MS/MS Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 235-236.  0.646
2001 Moll TS, Harms AC, Elfarra AA. Advances in the mass spectrometry of hemoglobin adducts: Global analysis of the covalent binding of butadiene monoxide Chemico-Biological Interactions. 135: 667-674. PMID 11397420 DOI: 10.1016/S0009-2797(01)00206-X  0.318
2001 Vener AV, Harms A, Sussman MR, Vierstra RD. Mass spectrometric resolution of reversible protein phosphorylation in photosynthetic membranes of Arabidopsis thaliana. The Journal of Biological Chemistry. 276: 6959-66. PMID 11113141 DOI: 10.1074/Jbc.M009394200  0.564
1998 Pasa Tolić L, Harms AC, Anderson GA, Smith RD, Willie A, Jorns MS. Electrospray ionization-mass spectrometry characterization of heterotetrameric sarcosine oxidase. Journal of the American Society For Mass Spectrometry. 9: 510-5. PMID 9879365 DOI: 10.1016/S1044-0305(98)00011-7  0.441
1998 Liu C, Tolić LP, Hofstadler SA, Harms AC, Smith RD, Kang C, Sinha N. Probing RegA/RNA interactions using electrospray ionization-fourier transform ion cyclotron resonance-mass spectrometry. Analytical Biochemistry. 262: 67-76. PMID 9735149 DOI: 10.1006/Abio.1998.2753  0.347
1996 Liu C, Wu Q, Harms AC, Smith RD. On-line microdialysis sample cleanup for electrospray ionization mass spectrometry of nucleic acid samples. Analytical Chemistry. 68: 3295-9. PMID 8797389 DOI: 10.1021/Ac960286J  0.319
1996 Cheng X, Harms AC, Goudreau PN, Terwilliger TC, Smith RD. Direct measurement of oligonucleotide binding stoichiometry of gene V protein by mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 93: 7022-7. PMID 8692937 DOI: 10.1073/Pnas.93.14.7022  0.441
1996 Cheng X, Morin PE, Harms AC, Bruce JE, Ben-David Y, Smith RD. Mass spectrometric characterization of sequence-specific complexes of DNA and transcription factor PU.1 DNA binding domain. Analytical Biochemistry. 239: 35-40. PMID 8660622 DOI: 10.1006/Abio.1996.0287  0.381
1996 Cheng X, Hofstadler SA, Bruce JE, Harms AC, Chen R, Smith RD, Terwilliger TC, Goudreau PN. Electrospray ionization with high performance fourier transform ion cyclotron resonance mass spectrometry for the study of noncovalent biomolecular complexes Techniques in Protein Chemistry. 7: 13-22. DOI: 10.1016/S1080-8914(96)80005-6  0.348
1996 Severs JC, Harms AC, Smith RD. A new high-performance interface for capillary electrophoresis/electrospray ionization mass spectrometry Rapid Communications in Mass Spectrometry. 10: 1175-1178. DOI: 10.1002/(Sici)1097-0231(19960731)10:10<1175::Aid-Rcm636>3.0.Co;2-L  0.397
1994 Harms AC, Khanna SN, Chen B, Castleman AW. Dehydrogenation reactions in Mg+(H2O)n clusters The Journal of Chemical Physics. 100: 3540-3544. DOI: 10.1063/1.466396  0.433
1993 Keesee RG, Chen B, Harms AC, Castleman AW. Reactions of metal oxide anions International Journal of Mass Spectrometry and Ion Processes. 123: 225-231. DOI: 10.1016/0168-1176(93)87101-W  0.365
1990 Harms AC, Leuchtner RE, Sigsworth SW, Castleman AW. Gas-phase reactivity of metal alloy clusters Journal of the American Chemical Society. 112: 5673-5674. DOI: 10.1021/Ja00170A060  0.412
1990 Leuchtner RE, Farley RW, Harms AC, Funasaka H, Castleman AW. Studies of group III cation reactions: consecutive association of methanol to Al+, Ga+, and In+ International Journal of Mass Spectrometry and Ion Processes. 102: 199-212. DOI: 10.1016/0168-1176(90)80060-G  0.379
1990 Leuchtner RE, Harms AC, Castleman AW. Metal cluster cation reactions: Carbon monoxide association to Cu n + ions The Journal of Chemical Physics. 92: 6527-6537.  0.382
1989 Leuchtner RE, Harms AC, Castleman AW. Thermal metal cluster anion reactions: Behavior of aluminum clusters with oxygen The Journal of Chemical Physics. 91: 2753-2754. DOI: 10.1063/1.456988  0.438
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