| Year |
Citation |
Score |
| 2019 |
Farahmand S, Riley T, Zarringhalam K. ModEx: A text mining system for extracting mode of regulation of Transcription Factor-gene regulatory interaction. Journal of Biomedical Informatics. 103353. PMID 31857203 DOI: 10.1016/J.Jbi.2019.103353 |
0.37 |
|
| 2018 |
Patalano S, Rodríguez-Nieves J, Colaneri C, Cotellessa J, Almanza D, Zhilin-Roth A, Riley T, Macoska J. CXCL12/CXCR4-Mediated Procollagen Secretion Is Coupled To Cullin-RING Ubiquitin Ligase Activation. Scientific Reports. 8: 3499. PMID 29472636 DOI: 10.1038/S41598-018-21506-7 |
0.319 |
|
| 2015 |
Riley TR, Lazarovici A, Mann RS, Bussemaker HJ. Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE. Elife. 4. PMID 26701911 DOI: 10.7554/Elife.06397 |
0.631 |
|
| 2014 |
Riley TR, Slattery M, Abe N, Rastogi C, Liu D, Mann RS, Bussemaker HJ. SELEX-seq: a method for characterizing the complete repertoire of binding site preferences for transcription factor complexes. Methods in Molecular Biology (Clifton, N.J.). 1196: 255-78. PMID 25151169 DOI: 10.1007/978-1-4939-1242-1_16 |
0.719 |
|
| 2013 |
Lazarovici A, Zhou T, Shafer A, Dantas Machado AC, Riley TR, Sandstrom R, Sabo PJ, Lu Y, Rohs R, Stamatoyannopoulos JA, Bussemaker HJ. Probing DNA shape and methylation state on a genomic scale with DNase I. Proceedings of the National Academy of Sciences of the United States of America. 110: 6376-81. PMID 23576721 DOI: 10.1073/Pnas.1216822110 |
0.612 |
|
| 2013 |
Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, et al. Evaluation of methods for modeling transcription factor sequence specificity. Nature Biotechnology. 31: 126-34. PMID 23354101 DOI: 10.1038/Nbt.2486 |
0.725 |
|
| 2012 |
Tan AY, Riley TR, Coady T, Bussemaker HJ, Manley JL. TLS/FUS (translocated in liposarcoma/fused in sarcoma) regulates target gene transcription via single-stranded DNA response elements. Proceedings of the National Academy of Sciences of the United States of America. 109: 6030-5. PMID 22460799 DOI: 10.1073/Pnas.1203028109 |
0.685 |
|
| 2011 |
Slattery M, Riley T, Liu P, Abe N, Gomez-Alcala P, Dror I, Zhou T, Rohs R, Honig B, Bussemaker HJ, Mann RS. Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins. Cell. 147: 1270-82. PMID 22153072 DOI: 10.1016/J.Cell.2011.10.053 |
0.764 |
|
| 2009 |
Riley T, Yu X, Sontag E, Levine A. The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes. Bmc Bioinformatics. 10: 111. PMID 19379484 DOI: 10.1186/1471-2105-10-111 |
0.416 |
|
| 2008 |
Riley T, Sontag E, Chen P, Levine A. Transcriptional control of human p53-regulated genes. Nature Reviews. Molecular Cell Biology. 9: 402-12. PMID 18431400 DOI: 10.1038/Nrm2395 |
0.433 |
|
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