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Xiuxia Du, D.Sc. - Publications

Affiliations: 
2005 Washington University, Saint Louis, St. Louis, MO 
Area:
Biomedical Engineering
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Du X, Smirnov A, Pluskal T, Jia W, Sumner S. Metabolomics Data Preprocessing Using ADAP and MZmine 2. Methods in Molecular Biology (Clifton, N.J.). 2104: 25-48. PMID 31953811 DOI: 10.1007/978-1-0716-0239-3_3  0.377
2019 Smirnov A, Qiu Y, Jia W, Walker DI, Jones DP, Du X. ADAP-GC 4.0: Application of Clustering-Assisted Multivariate Curve Resolution to Spectral Deconvolution of Gas Chromatography-Mass Spectrometry Metabolomics Data. Analytical Chemistry. PMID 31274283 DOI: 10.1021/Acs.Analchem.9B01424  0.375
2018 Ni Y, Su M, Qiu Y, Jia W, Du X. Correction to ADAP-GC 3.0: Improved Peak Detection and Deconvolution of Co-eluting Metabolites from GC/TOF-MS Data for Metabolomics Studies. Analytical Chemistry. PMID 29694022 DOI: 10.1021/Acs.Analchem.8B01773  0.376
2018 Du X, Smirnov A, Jia W. A preparatory study of how to construct consensus mass spectra of recurrent unknown metabolites from untargeted GC–MS metabolomics data International Journal of Mass Spectrometry. 427: 73-78. DOI: 10.1016/J.Ijms.2017.09.015  0.37
2017 Smirnov A, Jia W, Walker DI, Jones DP, Du X. ADAP-GC 3.2: Graphical Software Tool for Efficient Spectral Deconvolution of Gas Chromatography-High Resolution Mass Spectrometry Metabolomics Data. Journal of Proteome Research. PMID 29076734 DOI: 10.1021/Acs.Jproteome.7B00633  0.388
2017 Myers OD, Sumner SJ, Li S, Barnes S, Du X. A Detailed Investigation and Comparison of the XCMS and MZmine 2 Chromatogram Construction and Chromatographic Peak Detection Methods for Preprocessing Mass Spectrometry Metabolomics Data. Analytical Chemistry. PMID 28752757 DOI: 10.1021/Acs.Analchem.7B01069  0.375
2017 Myers OD, Sumner SJ, Li S, Barnes S, Du X. One Step Forward for Reducing False Positive and False Negative Compound Identifications from Mass Spectrometry Metabolomics Data: New Algorithms for Constructing Extracted Ion Chromatograms and Detecting Chromatographic Peaks. Analytical Chemistry. PMID 28752754 DOI: 10.1021/Acs.Analchem.7B00947  0.348
2016 Barnes S, Benton HP, Casazza K, Cooper SJ, Cui X, Du X, Engler J, Kabarowski JH, Li S, Pathmasiri W, Prasain JK, Renfrow MB, Tiwari HK. Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future. Journal of Mass Spectrometry : Jms. 51: 535-548. PMID 28239968 DOI: 10.1002/Jms.3780  0.322
2016 Artigues A, Nadeau OW, Rimmer MA, Villar MT, Du X, Fenton AW, Carlson GM. Protein Structural Analysis via Mass Spectrometry-Based Proteomics. Advances in Experimental Medicine and Biology. 919: 397-431. PMID 27975228 DOI: 10.1007/978-3-319-41448-5_19  0.34
2016 Ni Y, Su M, Qiu Y, Jia W, Du X. ADAP-GC 3.0: Improved Peak Detection and Deconvolution of Co-eluting Metabolites from GC/TOF-MS Data for Metabolomics Studies. Analytical Chemistry. PMID 27461032 DOI: 10.1021/Acs.Analchem.6B02222  0.393
2016 Barnes S, Benton HP, Casazza K, Cooper SJ, Cui X, Du X, Engler J, Kabarowski JH, Li S, Pathmasiri W, Prasain JK, Renfrow MB, Tiwari HK. Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data. Journal of Mass Spectrometry : Jms. 51: 461-475. PMID 27434804 DOI: 10.1002/Jms.3782  0.304
2013 Du X, Zeisel SH. Spectral deconvolution for gas chromatography mass spectrometry-based metabolomics: current status and future perspectives. Computational and Structural Biotechnology Journal. 4: e201301013. PMID 24688694 DOI: 10.5936/Csbj.201301013  0.383
2012 Ni Y, Qiu Y, Jiang W, Suttlemyre K, Su M, Zhang W, Jia W, Du X. ADAP-GC 2.0: deconvolution of coeluting metabolites from GC/TOF-MS data for metabolomics studies. Analytical Chemistry. 84: 6619-29. PMID 22747237 DOI: 10.1021/Ac300898H  0.404
2011 Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF, Liotta LA, Popov SG. Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry. Molecular & Cellular Proteomics : McP. 10: M110.000927. PMID 21189417 DOI: 10.1074/Mcp.M110.000927  0.325
2011 Du X, Chowdhury SM, Manes NP, Wu S, Mayer MU, Adkins JN, Anderson GA, Smith RD. Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry. Journal of Proteome Research. 10: 923-31. PMID 21175198 DOI: 10.1021/Pr100848A  0.341
2010 Jiang W, Qiu Y, Ni Y, Su M, Jia W, Du X. An automated data analysis pipeline for GC-TOF-MS metabonomics studies. Journal of Proteome Research. 9: 5974-81. PMID 20825247 DOI: 10.1021/Pr1007703  0.383
2009 Chowdhury SM, Du X, Toli? N, Wu S, Moore RJ, Mayer MU, Smith RD, Adkins JN. Identification of cross-linked peptides after click-based enrichment using sequential collision-induced dissociation and electron transfer dissociation tandem mass spectrometry. Analytical Chemistry. 81: 5524-32. PMID 19496583 DOI: 10.1021/Ac900853K  0.323
2008 Ding SJ, Wang Y, Jacobs JM, Qian WJ, Yang F, Tolmachev AV, Du X, Wang W, Moore RJ, Monroe ME, Purvine SO, Waters K, Heibeck TH, Adkins JN, Camp DG, et al. Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography. Journal of Proteome Research. 7: 4215-24. PMID 18785766 DOI: 10.1021/Pr7007785  0.348
2008 Du X, Callister SJ, Manes NP, Adkins JN, Alexandridis RA, Zeng X, Roh JH, Smith WE, Donohue TJ, Kaplan S, Smith RD, Lipton MS. A computational strategy to analyze label-free temporal bottom-up proteomics data. Journal of Proteome Research. 7: 2595-604. PMID 18442284 DOI: 10.1021/Pr0704837  0.333
2008 Du X, Yang F, Manes NP, Stenoien DL, Monroe ME, Adkins JN, States DJ, Purvine SO, Camp DG, Smith RD. Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications. Journal of Proteome Research. 7: 2195-203. PMID 18422353 DOI: 10.1021/Pr070510T  0.355
2008 Manes NP, Estep RD, Mottaz HM, Moore RJ, Clauss TR, Monroe ME, Du X, Adkins JN, Wong SW, Smith RD. Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions. Journal of Proteome Research. 7: 960-8. PMID 18205298 DOI: 10.1021/Pr070432+  0.351
2007 Yang F, Jaitly N, Jayachandran H, Luo Q, Monroe ME, Du X, Gritsenko MA, Zhang R, Anderson DJ, Purvine SO, Adkins JN, Moore RJ, Mottaz HM, Ding SJ, Lipton MS, et al. Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition. Journal of Proteome Research. 6: 4489-97. PMID 17929957 DOI: 10.1021/Pr070068E  0.303
2006 Du X, Ghosh BK, Ulinski P. Encoding of motion targets by waves in turtle visual cortex Ieee Transactions On Biomedical Engineering. 53: 1688-1695. PMID 16916104 DOI: 10.1109/Tbme.2006.877796  0.519
2005 Du X, Ghosh BK, Ulinski P. Encoding and decoding target locations with waves in the turtle visual cortex Ieee Transactions On Biomedical Engineering. 52: 566-577. PMID 15825858 DOI: 10.1109/Tbme.2004.841262  0.52
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