| Year |
Citation |
Score |
| 2022 |
Macke AC, Kelly MS, Varikoti RA, Mullen S, Groves D, Forbes C, Dima RI. Microtubule Severing Enzymes Oligomerization and Allostery: A Tale of Two Domains. The Journal of Physical Chemistry. B. PMID 36475672 DOI: 10.1021/acs.jpcb.2c05288 |
0.362 |
|
| 2022 |
Varikoti RA, Fonseka HYY, Kelly MS, Javidi A, Damre M, Mullen S, Nugent JL, Gonzales CM, Stan G, Dima RI. Exploring the Effect of Mechanical Anisotropy of Protein Structures in the Unfoldase Mechanism of AAA+ Molecular Machines. Nanomaterials (Basel, Switzerland). 12. PMID 35683705 DOI: 10.3390/nano12111849 |
0.389 |
|
| 2022 |
Kliuchnikov E, Klyshko E, Kelly MS, Zhmurov A, Dima RI, Marx KA, Barsegov V. Microtubule assembly and disassembly dynamics model: Exploring dynamic instability and identifying features of Microtubules' Growth, Catastrophe, Shortening, and Rescue. Computational and Structural Biotechnology Journal. 20: 953-974. PMID 35242287 DOI: 10.1016/j.csbj.2022.01.028 |
0.443 |
|
| 2021 |
Damre M, Dayananda A, Varikoti RA, Stan G, Dima RI. Factors Underlying Asymmetric Pore Dynamics of Disaggregase and Microtubule Severing AAA+ Machines. Biophysical Journal. PMID 34181904 DOI: 10.1016/j.bpj.2021.05.027 |
0.349 |
|
| 2021 |
Szatkowski L, Varikoti RA, Dima RI. Modeling the Mechanical Response of Microtubule Lattices to Pressure. The Journal of Physical Chemistry. B. 125: 5009-5021. PMID 33970630 DOI: 10.1021/acs.jpcb.1c01770 |
0.331 |
|
| 2020 |
Varikoti RA, Macke AC, Speck V, Ross JL, Dima RI. Molecular Investigations into the Unfoldase Action of Severing Enzymes on Microtubules. Cytoskeleton (Hoboken, N.J.). PMID 32170815 DOI: 10.1002/Cm.21606 |
0.325 |
|
| 2019 |
Szatkowski L, Merz DR, Jiang N, Ejikeme I, Belonogov L, Ross JL, Dima RI. The Mechanics of the Microtubule Seam Interface Probed by Molecular Simulations and In Vitro Severing Experiments. The Journal of Physical Chemistry. B. PMID 31117616 DOI: 10.1021/Acs.Jpcb.9B03059 |
0.344 |
|
| 2019 |
Szatkowski L, Dale MR, Ross JL, Dima RI. Mechanical Stability of Microtubule Lattices - Molecular Dynamic Indentation Studies Biophysical Journal. 116: 257a. DOI: 10.1016/J.Bpj.2018.11.1401 |
0.354 |
|
| 2017 |
Barsegov V, Ross J, Dima R. Dynamics of microtubules: highlights of recent computational and experimental investigations. Journal of Physics. Condensed Matter : An Institute of Physics Journal. PMID 28812545 DOI: 10.1088/1361-648X/Aa8670 |
0.41 |
|
| 2017 |
Jiang N, Dima R. Exploring Microtubule Breaking and Recovering Mechanisms using Large Scale Molecular Simulations Biophysical Journal. 112: 566a. DOI: 10.1016/J.Bpj.2016.11.3048 |
0.416 |
|
| 2017 |
Jiang N, Ross J, Dima R. Multi-Scale Modeling of the Nanomechanics of Microtubule Filaments Biophysical Journal. 112: 564a-565a. DOI: 10.1016/J.Bpj.2016.11.3041 |
0.496 |
|
| 2016 |
Jiang N, Bailey ME, Burke J, Ross JL, Dima RI. Modeling the effects of lattice defects on microtubule breaking and healing. Cytoskeleton (Hoboken, N.J.). PMID 27935245 DOI: 10.1002/Cm.21346 |
0.411 |
|
| 2015 |
Bauer D, Merz DR, Pelz B, Theisen KE, Yacyshyn G, Mokranjac D, Dima RI, Rief M, Žoldák G. Nucleotides regulate the mechanical hierarchy between subdomains of the nucleotide binding domain of the Hsp70 chaperone DnaK. Proceedings of the National Academy of Sciences of the United States of America. 112: 10389-94. PMID 26240360 DOI: 10.1073/Pnas.1504625112 |
0.705 |
|
| 2015 |
Kononova O, Kholodov Y, Theisen KE, Marx KA, Dima RI, Ataullakhanov FI, Grishchuk EL, Barsegov V. 52 Tubulin bond energies and microtubule biomechanics determined from nanoindentation in silico. Journal of Biomolecular Structure & Dynamics. 33: 35-6. PMID 26103263 DOI: 10.1080/07391102.2015.1032601 |
0.755 |
|
| 2015 |
Bodmer NK, Theisen KE, Dima RI. Molecular investigations into the mechanics of a muscle anchoring complex. Biophysical Journal. 108: 2322-32. PMID 25954889 DOI: 10.1016/J.Bpj.2015.03.036 |
0.719 |
|
| 2014 |
Kononova O, Kholodov Y, Theisen KE, Marx KA, Dima RI, Ataullakhanov FI, Grishchuk EL, Barsegov V. Tubulin bond energies and microtubule biomechanics determined from nanoindentation in silico. Journal of the American Chemical Society. 136: 17036-45. PMID 25389565 DOI: 10.1021/Ja506385P |
0.761 |
|
| 2014 |
Kononova O, Kholodov Y, Theisen KE, Marx KA, Dima RI, Ataullakhanov FI, Grishchuk EL, Barsegov V. Tubulin bond energies and microtubule biomechanics determined from nanoindentation in silico Journal of the American Chemical Society. 136: 17036-17045. DOI: 10.1021/ja506385p |
0.725 |
|
| 2013 |
Kononova O, Snijder J, Brasch M, Cornelissen J, Dima RI, Marx KA, Wuite GJL, Roos WH, Barsegov V. Structural transitions and energy landscape for cowpea chlorotic mottle virus capsid mechanics from nanomanipulation in vitro and in silico Biophysical Journal. 105: 1893-1903. PMID 24138865 DOI: 10.1016/J.Bpj.2013.08.032 |
0.306 |
|
| 2013 |
Theisen KE, Desai NJ, Volski AM, Dima RI. Mechanics of severing for large microtubule complexes revealed by coarse-grained simulations. The Journal of Chemical Physics. 139: 121926. PMID 24089738 DOI: 10.1063/1.4819817 |
0.747 |
|
| 2012 |
Zhmurov A, Kononova O, Litvinov RI, Dima RI, Barsegov V, Weisel JW. Mechanical transition from α-helical coiled coils to β-sheets in fibrin(ogen). Journal of the American Chemical Society. 134: 20396-402. PMID 22953986 DOI: 10.1021/Ja3076428 |
0.309 |
|
| 2012 |
Theisen KE, Zhmurov A, Newberry ME, Barsegov V, Dima RI. Multiscale modeling of the nanomechanics of microtubule protofilaments. The Journal of Physical Chemistry. B. 116: 8545-55. PMID 22509945 DOI: 10.1021/jp212608f |
0.735 |
|
| 2012 |
Lee JY, Duan L, Iverson TM, Dima RI. Exploring the role of topological frustration in actin refolding with molecular simulations. The Journal of Physical Chemistry. B. 116: 1677-86. PMID 22243338 DOI: 10.1021/jp209340y |
0.385 |
|
| 2011 |
Zhmurov A, Brown AE, Litvinov RI, Dima RI, Weisel JW, Barsegov V. Mechanism of fibrin(ogen) forced unfolding. Structure (London, England : 1993). 19: 1615-24. PMID 22078561 DOI: 10.1016/J.Str.2011.08.013 |
0.366 |
|
| 2011 |
Duan L, Zhmurov A, Barsegov V, Dima RI. Exploring the mechanical stability of the C2 domains in human synaptotagmin 1. The Journal of Physical Chemistry. B. 115: 10133-46. PMID 21776988 DOI: 10.1021/Jp2025945 |
0.334 |
|
| 2011 |
Lee JY, Iverson TM, Dima RI. Molecular investigations into the mechanics of actin in different nucleotide states. The Journal of Physical Chemistry. B. 115: 186-95. PMID 21141951 DOI: 10.1021/jp108249g |
0.312 |
|
| 2011 |
Zhmurov A, Brown AE, Litvinov RI, Dima RI, Weisel JW, Barsegov V. Molecular Structural Origins of Clot and Thrombus Mechanical Properties Blood. 118: 2257-2257. DOI: 10.1182/Blood.V118.21.2257.2257 |
0.39 |
|
| 2010 |
Zhmurov A, Dima RI, Kholodov Y, Barsegov V. SOP-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors Proteins: Structure, Function and Bioinformatics. 78: 2984-2999. PMID 20715052 DOI: 10.1002/Prot.22824 |
0.343 |
|
| 2010 |
Joshi H, Momin F, Haines KE, Dima RI. Exploring the contribution of collective motions to the dynamics of forced-unfolding in tubulin. Biophysical Journal. 98: 657-66. PMID 20159162 DOI: 10.1016/j.bpj.2009.10.043 |
0.348 |
|
| 2008 |
Dima RI, Joshi H. Probing the origin of tubulin rigidity with molecular simulations. Proceedings of the National Academy of Sciences of the United States of America. 105: 15743-8. PMID 18840679 DOI: 10.1073/pnas.0806113105 |
0.417 |
|
| 2007 |
Mickler M, Dima RI, Dietz H, Hyeon C, Thirumalai D, Rief M. Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations. Proceedings of the National Academy of Sciences of the United States of America. 104: 20268-73. PMID 18079292 DOI: 10.1073/Pnas.0705458104 |
0.366 |
|
| 2003 |
Thirumalai D, Klimov DK, Dima RI. Emerging ideas on the molecular basis of protein and peptide aggregation Current Opinion in Structural Biology. 13: 146-159. PMID 12727507 DOI: 10.1016/S0959-440X(03)00032-0 |
0.321 |
|
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