| Year |
Citation |
Score |
| 2024 |
Wu LF, Zhang J, Cornwell-Arquitt R, Hendrix DA, Radakovic A, Szostak JW. Selective Nonenzymatic Formation of Biologically Common RNA Hairpins. Angewandte Chemie (International Ed. in English). e202417370. PMID 39568250 DOI: 10.1002/anie.202417370 |
0.352 |
|
| 2023 |
Estelle AB, Forsythe HM, Yu Z, Hughes K, Lasher B, Allen P, Reardon PN, Hendrix DA, Barbar EJ. RNA structure and multiple weak interactions balance the interplay between RNA binding and phase separation of SARS-CoV-2 nucleocapsid. Pnas Nexus. 2: pgad333. PMID 37901441 DOI: 10.1093/pnasnexus/pgad333 |
0.315 |
|
| 2020 |
Kashyap A, Rhodes A, Kronmiller B, Berger J, Champagne A, Davis EW, Finnegan MV, Geniza M, Hendrix DA, Löhr CV, Petro VM, Sharpton TJ, Wells J, Epps CW, Jaiswal P, et al. Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis. Bmc Genomics. 21: 153. PMID 32050897 DOI: 10.1186/S12864-019-6432-4 |
0.485 |
|
| 2019 |
Bell J, Larson M, Kutzler M, Bionaz M, Löhr CV, Hendrix D. miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs. Plos Computational Biology. 15: e1007309. PMID 31596843 DOI: 10.1371/Journal.Pcbi.1007309 |
0.418 |
|
| 2019 |
Huang L, Zhang H, Deng D, Zhao K, Liu K, Hendrix DA, Mathews DH. LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search. Bioinformatics (Oxford, England). 35: i295-i304. PMID 31510672 DOI: 10.1093/Bioinformatics/Btz375 |
0.417 |
|
| 2019 |
Ritter N, Ali T, Kopitchinski N, Schuster P, Beisaw A, Hendrix DA, Schulz MH, Müller-McNicoll M, Dimmeler S, Grote P. The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development. Developmental Cell. PMID 31422919 DOI: 10.1016/J.Devcel.2019.07.013 |
0.433 |
|
| 2019 |
Sall K, Dekkers BJW, Nonogaki M, Katsuragawa Y, Koyari R, Hendrix D, Willems LAJ, Bentsink L, Nonogaki H. DELAY OF GERMINATION1-LIKE4 acts as an inducer of seed reserve accumulation. The Plant Journal : For Cell and Molecular Biology. PMID 31359518 DOI: 10.1111/Tpj.14485 |
0.325 |
|
| 2018 |
Hill ST, Kuintzle R, Teegarden A, Merrill E, Danaee P, Hendrix DA. A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential. Nucleic Acids Research. PMID 29986088 DOI: 10.1093/Nar/Gky567 |
0.433 |
|
| 2018 |
Danaee P, Rouches M, Wiley M, Deng D, Huang L, Hendrix D. bpRNA: large-scale automated annotation and analysis of RNA secondary structure. Nucleic Acids Research. PMID 29746666 DOI: 10.1093/Nar/Gky285 |
0.439 |
|
| 2017 |
Li S, Teegarden A, Bauer EM, Choi J, Messaddeq N, Hendrix DA, Ganguli-Indra G, Leid M, Indra AK. Transcription Factor CTIP1/ BCL11A Regulates Epidermal Differentiation and Lipid Metabolism During Skin Development. Scientific Reports. 7: 13427. PMID 29044125 DOI: 10.1038/S41598-017-13347-7 |
0.351 |
|
| 2017 |
Hill ST, Sudarsanam R, Henning J, Hendrix D. HopBase: a unified resource for Humulus genomics. Database : the Journal of Biological Databases and Curation. 2017. PMID 28415075 DOI: 10.1093/Database/Bax009 |
0.347 |
|
| 2017 |
Garcia GR, Goodale BC, Wiley MW, La Du JK, Hendrix DA, Tanguay RL. In vivo characterization of an AHR-dependent long non-coding RNA required for proper Sox9b expression. Molecular Pharmacology. PMID 28385905 DOI: 10.1124/Mol.117.108233 |
0.43 |
|
| 2017 |
Beaver LM, Kuintzle R, Buchanan A, Wiley MW, Glasser ST, Wong CP, Johnson GS, Chang JH, Löhr CV, Williams DE, Dashwood RH, Hendrix DA, Ho E. Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer. The Journal of Nutritional Biochemistry. 42: 72-83. PMID 28131897 DOI: 10.1016/J.Jnutbio.2017.01.001 |
0.371 |
|
| 2017 |
Sall K, Hendrix D, Sekine T, Katsuragawa Y, Koyari R, Nonogaki H. Transcriptomics of nine-cis-epoxycarotenoid dioxygenase 6 induction in imbibed seeds reveals feedback mechanisms and long non-coding RNAs Seed Science Research. 27: 251-261. DOI: 10.1017/S0960258517000216 |
0.422 |
|
| 2017 |
Henning J, Hill S, Darby P, Hendrix D. QTL examination of a bi-parental mapping population segregating for “short-stature” in hop (Humulus lupulus L.) Euphytica. 213: 77. DOI: 10.1007/S10681-017-1848-X |
0.313 |
|
| 2016 |
Bekelis K, Kerley-Hamilton JS, Teegarden A, Tomlinson CR, Kuintzle R, Simmons N, Singer RJ, Roberts DW, Kellis M, Hendrix DA. MicroRNA and gene expression changes in unruptured human cerebral aneurysms. Journal of Neurosurgery. 1-10. PMID 26918470 DOI: 10.3171/2015.11.Jns151841 |
0.522 |
|
| 2016 |
Hill ST, Coggins J, Liston A, Hendrix D, Henning JA. Genomics of the hop pseudo-autosomal regions Euphytica. 1-9. DOI: 10.1007/S10681-016-1655-9 |
0.322 |
|
| 2015 |
Das PP, Hendrix DA, Apostolou E, Buchner AH, Canver MC, Beyaz S, Ljuboja D, Kuintzle R, Kim W, Karnik R, Shao Z, Xie H, Xu J, De Los Angeles A, Zhang Y, et al. PRC2 Is Required to Maintain Expression of the Maternal Gtl2-Rian-Mirg Locus by Preventing De Novo DNA Methylation in Mouse Embryonic Stem Cells. Cell Reports. 12: 1456-1470. PMID 26299972 DOI: 10.1016/J.Celrep.2015.07.053 |
0.549 |
|
| 2013 |
Grote P, Wittler L, Hendrix D, Koch F, Währisch S, Beisaw A, Macura K, Bläss G, Kellis M, Werber M, Herrmann BG. The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse. Developmental Cell. 24: 206-14. PMID 23369715 DOI: 10.1016/J.Devcel.2012.12.012 |
0.566 |
|
| 2012 |
Washietl S, Will S, Hendrix DA, Goff LA, Rinn JL, Berger B, Kellis M. Computational analysis of noncoding RNAs. Wiley Interdisciplinary Reviews. Rna. 3: 759-78. PMID 22991327 DOI: 10.1002/Wrna.1134 |
0.636 |
|
| 2011 |
Hilgers V, Perry MW, Hendrix D, Stark A, Levine M, Haley B. Neural-specific elongation of 3′ UTRs during Drosophila development Proceedings of the National Academy of Sciences of the United States of America. 108: 15864-15869. PMID 21896737 DOI: 10.1073/Pnas.1112672108 |
0.532 |
|
| 2011 |
Chopra VS, Hendrix DA, Core LJ, Tsui C, Lis JT, Levine M. The polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo. Molecular Cell. 42: 837-44. PMID 21700228 DOI: 10.1016/J.Molcel.2011.05.009 |
0.507 |
|
| 2010 |
Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, et al. The genome of the Western clawed frog Xenopus tropicalis. Science (New York, N.Y.). 328: 633-6. PMID 20431018 DOI: 10.1126/Science.1183670 |
0.669 |
|
| 2010 |
Hendrix D, Levine M, Shi W. miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data. Genome Biology. 11: R39. PMID 20370911 DOI: 10.1186/Gb-2010-11-4-R39 |
0.467 |
|
| 2009 |
Shi W, Hendrix D, Levine M, Haley B. A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate Nature Structural and Molecular Biology. 16: 183-189. PMID 19151725 DOI: 10.1038/Nsmb.1536 |
0.492 |
|
| 2008 |
Hong JW, Hendrix DA, Papatsenko D, Levine MS. How the Dorsal gradient works: insights from postgenome technologies. Proceedings of the National Academy of Sciences of the United States of America. 105: 20072-6. PMID 19104040 DOI: 10.1073/Pnas.0806476105 |
0.475 |
|
| 2008 |
Hong JW, Hendrix DA, Levine MS. Shadow enhancers as a source of evolutionary novelty. Science (New York, N.Y.). 321: 1314. PMID 18772429 DOI: 10.1126/Science.1160631 |
0.459 |
|
| 2008 |
Haley B, Hendrix D, Trang V, Levine M. A simplified miRNA-based gene silencing method for Drosophila melanogaster Developmental Biology. 321: 482-490. PMID 18598689 DOI: 10.1016/J.Ydbio.2008.06.015 |
0.574 |
|
| 2008 |
Hendrix DA, Hong JW, Zeitlinger J, Rokhsar DS, Levine MS. Promoter elements associated with RNA Pol II stalling in the Drosophila embryo. Proceedings of the National Academy of Sciences of the United States of America. 105: 7762-7. PMID 18505835 DOI: 10.1073/Pnas.0802406105 |
0.64 |
|
| 2005 |
Mahony S, Hendrix D, Golden A, Smith TJ, Rokhsar DS. Transcription factor binding site identification using the self-organizing map. Bioinformatics (Oxford, England). 21: 1807-14. PMID 15647296 DOI: 10.1093/Bioinformatics/Bti256 |
0.515 |
|
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