☰

Michael J. Schnieders, D.Sc. - Publications

Affiliations: 
2007 Washington University, Saint Louis, St. Louis, MO 
Area:
General Biophysics, Condensed Matter Physics, Biomedical Engineering
Tree Info Similar researchers PubMed Report error

37/59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Thiel AC, Speranza MJ, Jadhav S, Stevens LL, Unruh DK, Ren P, Ponder JW, Shen J, Schnieders MJ. Constant-pH Simulations with the Polarizable Atomic Multipole AMOEBA Force Field. Journal of Chemical Theory and Computation. PMID 38507252 DOI: 10.1021/acs.jctc.3c01180  0.731
2023 Corrigan RA, Thiel AC, Lynn JR, Casavant TL, Ren P, Ponder JW, Schnieders MJ. A generalized Kirkwood implicit solvent for the polarizable AMOEBA protein model. The Journal of Chemical Physics. 159. PMID 37526158 DOI: 10.1063/5.0158914  0.732
2021 Corrigan RA, Qi G, Thiel AC, Lynn JR, Walker BD, Casavant TL, Lagardere L, Piquemal JP, Ponder JW, Ren P, Schnieders MJ. Implicit Solvents for the Polarizable Atomic Multipole AMOEBA Force Field. Journal of Chemical Theory and Computation. PMID 33769814 DOI: 10.1021/acs.jctc.0c01286  0.749
2019 Tollefson MR, Litman JM, Qi G, O'Connell CE, Wipfler MJ, Marini RJ, Bernabe HV, Tollefson WTA, Braun TA, Casavant TL, Smith RJH, Schnieders MJ. Structural Insights into Hearing Loss Genetics from Polarizable Protein Repacking. Biophysical Journal. PMID 31327459 DOI: 10.1016/J.Bpj.2019.06.030  0.424
2019 Litman J, Thiel AC, Schnieders MJ. Scalable Indirect Free Energy Method Applied to Divalent Cation-Metalloprotein Binding. Journal of Chemical Theory and Computation. PMID 31268700 DOI: 10.1021/Acs.Jctc.9B00147  0.496
2018 Rackers JA, Wang Z, Lu C, Laury ML, Lagardère L, Schnieders MJ, Piquemal JP, Ren P, Ponder JW. Tinker 8: Software Tools for Molecular Design. Journal of Chemical Theory and Computation. 14: 5273-5289. PMID 30176213 DOI: 10.1021/Acs.Jctc.8B00529  0.724
2018 Lagardère L, Jolly LH, Lipparini F, Aviat F, Stamm B, Jing ZF, Harger M, Torabifard H, Cisneros GA, Schnieders MJ, Gresh N, Maday Y, Ren PY, Ponder JW, Piquemal JP. Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields. Chemical Science. 9: 956-972. PMID 29732110 DOI: 10.1039/C7Sc04531J  0.735
2017 Avdic A, Tollefson MR, Tatro N, LuCore SD, Litman JM, Fenn TD, Schnieders MJ. Polarizable Amoeba Force Field Metadynamics with Minimization Predicts Missing Protein Loops Biophysical Journal. 112: 55a. DOI: 10.1016/J.Bpj.2016.11.332  0.495
2016 Nessler IJ, Litman JM, Schnieders MJ. Toward polarizable AMOEBA thermodynamics at fixed charge efficiency using a dual force field approach: application to organic crystals. Physical Chemistry Chemical Physics : Pccp. PMID 27524378 DOI: 10.1039/C6Cp02595A  0.498
2016 Bell DR, Qi R, Jing Z, Xiang JY, Mejias C, Schnieders MJ, Ponder JW, Ren P. Calculating binding free energies of host-guest systems using the AMOEBA polarizable force field. Physical Chemistry Chemical Physics : Pccp. PMID 27254477 DOI: 10.1039/C6Cp02509A  0.722
2016 Litman JM, Joo Sun Y, Hou T, LuCore SD, Panel N, Simonson T, Fuentes EJ, Schnieders MJ. Protein Sequence Optimization with a Polarizable Force Field: Insights from PDZ Domains Biophysical Journal. 110: 345a-346a. DOI: 10.1016/J.Bpj.2015.11.1859  0.45
2015 Lagardère L, Lipparini F, Polack É, Stamm B, Cancès É, Schnieders M, Ren P, Maday Y, Piquemal JP. Scalable evaluation of polarization energy and associated forces in polarizable molecular dynamics: II. Toward massively parallel computations using smooth particle mesh Ewald. Journal of Chemical Theory and Computation. 11: 2589-99. PMID 26575557 DOI: 10.1021/Acs.Jctc.5B00171  0.642
2015 Lipparini F, Lagardère L, Raynaud C, Stamm B, Cancès E, Mennucci B, Schnieders M, Ren P, Maday Y, Piquemal JP. Polarizable molecular dynamics in a polarizable continuum solvent. Journal of Chemical Theory and Computation. 11: 623-34. PMID 26516318 DOI: 10.1021/Ct500998Q  0.628
2015 LuCore SD, Litman JM, Powers KT, Gao S, Lynn AM, Tollefson WT, Fenn TD, Washington MT, Schnieders MJ. Dead-End Elimination with a Polarizable Force Field Repacks PCNA Structures. Biophysical Journal. 109: 816-26. PMID 26287633 DOI: 10.1016/J.Bpj.2015.06.062  0.498
2014 Park J, Nessler I, McClain B, Macikenas D, Baltrusaitis J, Schnieders MJ. Absolute Organic Crystal Thermodynamics: Growth of the Asymmetric Unit into a Crystal via Alchemy. Journal of Chemical Theory and Computation. 10: 2781-91. PMID 26586507 DOI: 10.1021/Ct500180M  0.405
2014 Lagardère L, Lipparini F, Polack É, Stamm B, Cancès É, Schnieders M, Ren P, Maday Y, Piquemal JP. Scalable Evaluation of Polarization Energy and Associated Forces in Polarizable Molecular Dynamics: II.Towards Massively Parallel Computations using Smooth Particle Mesh Ewald. Journal of Chemical Theory and Computation. 10: 1638-1651. PMID 26512230 DOI: 10.1021/Ct401096T  0.642
2014 LuCore SD, Gao S, Lynn AM, Tollefson WT, Powers KT, Fenn TD, Schnieders MJ. Biomolecular Structure Refinement & Prediction using Dead-End Elimination with a Polarizable Force Field Biophysical Journal. 106: 407a. DOI: 10.1016/J.Bpj.2013.11.2294  0.482
2012 Ren P, Chun J, Thomas DG, Schnieders MJ, Marucho M, Zhang J, Baker NA. Biomolecular electrostatics and solvation: a computational perspective. Quarterly Reviews of Biophysics. 45: 427-91. PMID 23217364 DOI: 10.1017/S003358351200011X  0.59
2012 Schnieders MJ, Baltrusaitis J, Shi Y, Chattree G, Zheng L, Yang W, Ren P. The Structure, Thermodynamics and Solubility of Organic Crystals from Simulation with a Polarizable Force Field. Journal of Chemical Theory and Computation. 8: 1721-1736. PMID 22582032 DOI: 10.1021/Ct300035U  0.627
2012 Schnieders MJ, Kaoud TS, Yan C, Dalby KN, Ren P. Computational insights for the discovery of non-ATP competitive inhibitors of MAP kinases. Current Pharmaceutical Design. 18: 1173-85. PMID 22316156 DOI: 10.2174/138920012799362873  0.487
2012 Schnieders MJ, Shi Y, Wu J, Baltrusaitis J, Yang W, Ren P. Pharmaceutical Applications of the Polarizable Amoeba Potential, Including Protein-Ligand Binding Affinity and Drug Solubility, using the Force Field X Software Biophysical Journal. 102: 409a-410a. DOI: 10.1016/J.Bpj.2011.11.2239  0.666
2012 Fenn T, Schnieders M, Pande V. Bayesian Modeling of Crystallographic Disorder Biophysical Journal. 102: 225a. DOI: 10.1016/J.Bpj.2011.11.1235  0.381
2011 Schnieders MJ, Fenn TD, Pande VS. Polarizable Atomic Multipole X-Ray Refinement: Particle Mesh Ewald Electrostatics for Macromolecular Crystals. Journal of Chemical Theory and Computation. 7: 1141-1156. PMID 26606362 DOI: 10.1021/Ct100506D  0.43
2011 Fenn TD, Schnieders MJ. Polarizable atomic multipole X-ray refinement: weighting schemes for macromolecular diffraction. Acta Crystallographica. Section D, Biological Crystallography. 67: 957-65. PMID 22101822 DOI: 10.1107/S0907444911039060  0.373
2011 MacCallum JL, Pérez A, Schnieders MJ, Hua L, Jacobson MP, Dill KA. Assessment of protein structure refinement in CASP9. Proteins. 79: 74-90. PMID 22069034 DOI: 10.1002/Prot.23131  0.346
2011 Fenn TD, Schnieders MJ, Mustyakimov M, Wu C, Langan P, Pande VS, Brunger AT. Reintroducing electrostatics into macromolecular crystallographic refinement: application to neutron crystallography and DNA hydration. Structure (London, England : 1993). 19: 523-33. PMID 21481775 DOI: 10.1016/J.Str.2011.01.015  0.39
2010 Fenn TD, Schnieders MJ, Brunger AT. A smooth and differentiable bulk-solvent model for macromolecular diffraction. Acta Crystallographica. Section D, Biological Crystallography. 66: 1024-31. PMID 20823553 DOI: 10.1107/S0907444910031045  0.411
2010 Fenn TD, Schnieders MJ, Brunger AT, Pande VS. Polarizable atomic multipole x-ray refinement: hydration geometry and application to macromolecules. Biophysical Journal. 98: 2984-92. PMID 20550911 DOI: 10.1016/J.Bpj.2010.02.057  0.498
2010 Ponder JW, Wu C, Ren P, Pande VS, Chodera JD, Schnieders MJ, Haque I, Mobley DL, Lambrecht DS, DiStasio RA, Head-Gordon M, Clark GN, Johnson ME, Head-Gordon T. Current status of the AMOEBA polarizable force field. The Journal of Physical Chemistry. B. 114: 2549-64. PMID 20136072 DOI: 10.1021/Jp910674D  0.761
2010 Schnieders MJ, Fenn TD, Pande VS, Brunger AT. X-Ray Crystallography Refinement as Ewald Intended: From Drug Design to Ribosome Crystals Biophysical Journal. 98: 177a. DOI: 10.1016/J.Bpj.2009.12.946  0.425
2010 Fenn T, Schnieders M, Pande V, Brunger A. Is Theory Leading Neutron Diffraction in Macromolecular Solvent Networks? Biophysical Journal. 98: 760a. DOI: 10.1016/J.Bpj.2009.12.4172  0.398
2009 Shi Y, Jiao D, Schnieders MJ, Ren P. Trypsin-ligand binding free energy calculation with AMOEBA. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 2328-31. PMID 19965178 DOI: 10.1109/IEMBS.2009.5335108  0.525
2009 MacCallum JL, Hua L, Schnieders MJ, Pande VS, Jacobson MP, Dill KA. Assessment of the protein-structure refinement category in CASP8. Proteins. 77: 66-80. PMID 19714776 DOI: 10.1002/Prot.22538  0.335
2009 Schnieders MJ, Fenn TD, Pande VS, Brunger AT. Polarizable atomic multipole X-ray refinement: application to peptide crystals. Acta Crystallographica. Section D, Biological Crystallography. 65: 952-65. PMID 19690373 DOI: 10.1107/S0907444909022707  0.446
2009 Jiao D, Zhang J, Duke RE, Li G, Schnieders MJ, Ren P. Trypsin-ligand binding free energies from explicit and implicit solvent simulations with polarizable potential. Journal of Computational Chemistry. 30: 1701-11. PMID 19399779 DOI: 10.1002/Jcc.21268  0.601
2007 Schnieders MJ, Ponder JW. Polarizable Atomic Multipole Solutes in a Generalized Kirkwood Continuum. Journal of Chemical Theory and Computation. 3: 2083-97. PMID 26636202 DOI: 10.1021/Ct7001336  0.716
2007 Schnieders MJ, Baker NA, Ren P, Ponder JW. Polarizable atomic multipole solutes in a Poisson-Boltzmann continuum. The Journal of Chemical Physics. 126: 124114. PMID 17411115 DOI: 10.1063/1.2714528  0.748
Low-probability matches (unlikely to be authored by this person)
2017 Lansdon LA, Bernabe HV, Nidey N, Standley J, Schnieders MJ, Murray JC. The Use of Variant Maps to Explore Domain-Specific Mutations of FGFR1. Journal of Dental Research. 22034517726496. PMID 28825856 DOI: 10.1177/0022034517726496  0.284
2019 Bi J, Thiel KW, Litman JM, Zhang Y, Devor EJ, Newtson AM, Schnieders MJ, Gonzalez Bosquet J, Leslie KK. Characterization of a TP53 Somatic Variant of Unknown Function From an Ovarian Cancer Patient Using Organoid Culture and Computational Modeling. Clinical Obstetrics and Gynecology. PMID 31876640 DOI: 10.1097/Grf.0000000000000516  0.275
1999 Anderson DA, Schnieders MJ, Heiner AD, Pedersen DR, Brown TD, Brand RA. A Surgical Guide To Accurately Place Pins Or Nails Within The Femoral Head Journal of Musculoskeletal Research. 3: 233-237. DOI: 10.1142/S0218957799000245  0.243
2018 Azaiez H, Booth KT, Ephraim SS, Crone B, Black-Ziegelbein EA, Marini RJ, Shearer AE, Sloan-Heggen CM, Kolbe D, Casavant T, Schnieders MJ, Nishimura C, Braun T, Smith RJH. Genomic Landscape and Mutational Signatures of Deafness-Associated Genes. American Journal of Human Genetics. PMID 30245029 DOI: 10.1016/J.Ajhg.2018.08.006  0.24
2015 Bu F, Borsa NG, Jones MB, Takanami E, Nishimura C, Hauer JJ, Azaiez H, Black-Ziegelbein EA, Meyer NC, Kolbe DL, Li Y, Frees K, Schnieders MJ, Thomas C, Nester C, et al. High-Throughput Genetic Testing for Thrombotic Microangiopathies and C3 Glomerulopathies. Journal of the American Society of Nephrology : Jasn. PMID 26283675 DOI: 10.1681/Asn.2015040385  0.229
2015 DeLuca AP, Whitmore SS, Barnes J, Sharma TP, Westfall TA, Scott CA, Weed MC, Wiley JS, Wiley LA, Johnston RM, Schnieders MJ, Lentz SR, Tucker BA, Mullins RF, Scheetz TE, et al. Hypomorphic mutations in TRNT1 cause retinitis pigmentosa with erythrocytic microcytosis. Human Molecular Genetics. PMID 26494905 DOI: 10.1093/Hmg/Ddv446  0.223
2015 Booth KT, Azaiez H, Kahrizi K, Simpson AC, Tollefson WT, Sloan CM, Meyer NC, Babanejad M, Ardalani F, Arzhangi S, Schnieders MJ, Najmabadi H, Smith RJ. PDZD7 and hearing loss: More than just a modifier. American Journal of Medical Genetics. Part A. PMID 26416264 DOI: 10.1002/Ajmg.A.37274  0.219
2022 Nessler AJ, Okada O, Hermon MJ, Nagata H, Schnieders MJ. Progressive alignment of crystals: reproducible and efficient assessment of crystal structure similarity. Journal of Applied Crystallography. 55: 1528-1537. PMID 36570662 DOI: 10.1107/S1600576722009670  0.206
2018 Schnieders MJ, Goar W, Griess M, Roos BR, Scheetz TE, Stone EM, Fingert JH. A novel mutation (LEU396ARG) in OPA1 is associated with a severe phenotype in a large dominant optic atrophy pedigree. Eye (London, England). PMID 29350691 DOI: 10.1038/Eye.2017.303  0.204
2019 Boese EA, Tollefson MR, Schnieders MJ, Darbro BW, Alward WLM, Fingert JH. Novel intragenic deletion in a pedigree with aniridia, morbid obesity, and diabetes. Current Eye Research. PMID 31361967 DOI: 10.1080/02713683.2019.1649704  0.201
2017 Hauer J, Bu F, Xiao X, Frees K, Borsa NG, Taylor A, Breheny P, Schnieders M, Nester C, Smith R. 134Unraveling the role of the glomerular glycomatrix in C3 glomerulopathy Molecular Immunology. 89: 183. DOI: 10.1016/J.Molimm.2017.06.173  0.178
2023 Tollefson MR, Gogal RA, Weaver AM, Schaefer AM, Marini RJ, Azaiez H, Kolbe DL, Wang D, Weaver AE, Casavant TL, Braun TA, Smith RJH, Schnieders M. Assessing Variants of Uncertain Significance Implicated in Hearing Loss Using a Comprehensive Deafness Proteome. Research Square. PMID 36778238 DOI: 10.21203/rs.3.rs-2508462/v1  0.169
2024 Nessler AJ, Okada O, Kinoshita Y, Nishimura K, Nagata H, Fukuzawa K, Yonemochi E, Schnieders MJ. Crystal Polymorph Search in the Ensemble via a Deposition/Sublimation Alchemical Path. Crystal Growth & Design. 24: 3205-3217. PMID 38659664 DOI: 10.1021/acs.cgd.3c01358  0.12
2022 Awotoye W, Mossey PA, Hetmanski JB, Gowans LJJ, Eshete MA, Adeyemo WL, Alade A, Zeng E, Adamson O, Naicker T, Anand D, Adeleke C, Busch T, Li M, Petrin A, ... ... Schnieders MJ, et al. Whole-genome sequencing reveals de-novo mutations associated with nonsyndromic cleft lip/palate. Scientific Reports. 12: 11743. PMID 35817949 DOI: 10.1038/s41598-022-15885-1  0.119
2021 Hinz BE, Walker SG, Xiong A, Gogal RA, Schnieders MJ, Wallrath LL. In Silico and In Vivo Analysis of Amino Acid Substitutions That Cause Laminopathies. International Journal of Molecular Sciences. 22. PMID 34681887 DOI: 10.3390/ijms222011226  0.098
2023 Sylvers-Davie KL, Bierstedt KC, Schnieders MJ, Davies BSJ. Endothelial Lipase Variant, T111I, Does Not Alter Inhibition by Angiopoietin-like Proteins. Biorxiv : the Preprint Server For Biology. PMID 37693454 DOI: 10.1101/2023.08.18.553740  0.064
2024 Sylvers-Davie KL, Bierstedt KC, Schnieders MJ, Davies BSJ. Endothelial lipase variant T111I does not alter inhibition by angiopoietin-like proteins. Scientific Reports. 14: 4246. PMID 38379026 DOI: 10.1038/s41598-024-54705-6  0.064
2023 Sharma R, Oak N, Chen W, Gogal R, Kirschner M, Beier F, Schnieders MJ, Spies M, Nichols KE, Wlodarski M. Germline landscape of variants in pediatric malignancies: identification of as a novel cancer predisposition candidate gene. Frontiers in Oncology. 13: 1229507. PMID 37869077 DOI: 10.3389/fonc.2023.1229507  0.059
2017 Simpson A, Avdic A, Roos BR, DeLuca A, Miller K, Schnieders MJ, Scheetz TE, Alward WL, Fingert JH. LADD syndrome with glaucoma is caused by a novel gene. Molecular Vision. 23: 179-184. PMID 28400699  0.058
2020 Hagedorn J, Avdic A, Schnieders MJ, Roos BR, Kwon YH, Drack AV, Boese EA, Fingert JH. Nanophthalmos patient with a THR518MET mutation in MYRF, a case report. Bmc Ophthalmology. 20: 388. PMID 33004036 DOI: 10.1186/s12886-020-01659-8  0.041
2023 Boese EA, Drack AV, Roos BR, Alward WLM, Tollefson MR, Schnieders MJ, Scheetz TE, Boldt HC, Stone EM, Fingert JH. GJA3 Genetic Variation and Autosomal Dominant Congenital Cataracts and Glaucoma Following Cataract Surgery. Jama Ophthalmology. PMID 37589989 DOI: 10.1001/jamaophthalmol.2023.3535  0.029
2023 Tollefson MR, Gogal RA, Weaver AM, Schaefer AM, Marini RJ, Azaiez H, Kolbe DL, Wang D, Weaver AE, Casavant TL, Braun TA, Smith RJH, Schnieders MJ. Assessing variants of uncertain significance implicated in hearing loss using a comprehensive deafness proteome. Human Genetics. PMID 37086329 DOI: 10.1007/s00439-023-02559-9  0.02
Hide low-probability matches.