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Nikolay Simakov, Ph.D. - Publications

Affiliations: 
2010 Carnegie Mellon University, Pittsburgh, PA 
Area:
Molecular Chemistry
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8 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Simakov NA, Kurnikova MG. Membrane Position Dependency of the pKa and Conductivity of the Protein Ion Channel. The Journal of Membrane Biology. PMID 29340712 DOI: 10.1007/S00232-018-0013-3  0.685
2016 Simakov NA, Leonard DA, Smith JC, Wymore T, Szarecka A. A Distal Disulfide Bridge in OXA-1 β-Lactamase Stabilizes the Catalytic Center and Alters the Dynamics of Specificity Determining Ω Loop. The Journal of Physical Chemistry. B. PMID 27668669 DOI: 10.1021/Acs.Jpcb.6B07884  0.301
2013 Kurnikov IV, Kyrychenko A, Flores-Canales JC, Rodnin MV, Simakov N, Vargas-Uribe M, Posokhov YO, Kurnikova M, Ladokhin AS. pH-triggered conformational switching of the diphtheria toxin T-domain: the roles of N-terminal histidines. Journal of Molecular Biology. 425: 2752-64. PMID 23648837 DOI: 10.1016/J.Jmb.2013.04.030  0.658
2013 Simakov NA, Kurnikova MG. Graphical Processing Unit accelerated Poisson equation solver and its application for calculation of single ion potential in ion-channels Computational and Mathematical Biophysics. 1: 151-163. DOI: 10.2478/Mlbmb-2013-0008  0.626
2011 Flores-Canales JC, Kurnikov I, Simakov N, Kyrychenko A, Rodnin MV, Ladokhin AS, Kurnikova M. Mechanism of the pH-Triggered Formation of Membrane-Competent State of the Diphtheria Toxin Translocation Domain Revealed by Simulations and Experiment Biophysical Journal. 100: 206a. DOI: 10.1016/J.Bpj.2010.12.1336  0.657
2010 Simakov NA, Kurnikova MG. Soft wall ion channel in continuum representation with application to modeling ion currents in α-hemolysin. The Journal of Physical Chemistry. B. 114: 15180-90. PMID 21028776 DOI: 10.1021/Jp1046062  0.662
2010 Simakov NA, Kurnikova MG. Extension of Poisson-Nernst Planck Theory of Ion Conductivity with Soft-Repulsion Potential between Ions and Protein. Sensitivity of I-V Properties of α-Hemolysin Channel on its Penetration Depth into Membrane Biophysical Journal. 98: 333a. DOI: 10.1016/J.Bpj.2009.12.1808  0.664
2009 Simakov NA, Kurnikova MG. Calculation of Current-Voltage properties of Biological Ion Channel, using Poisson-Nernst-Planck (PNP) Theory Biophysical Journal. 96: 662a. DOI: 10.1016/J.Bpj.2008.12.3498  0.683
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