| Year |
Citation |
Score |
| 2023 |
Kyrychenko A, Ladokhin AS. Fluorescent Probes and Quenchers in Studies of Protein Folding and Protein-Lipid Interactions. Chemical Record (New York, N.Y.). e202300232. PMID 37695081 DOI: 10.1002/tcr.202300232 |
0.307 |
|
| 2023 |
Rodnin MV, Vasques-Montes V, Kyrychenko A, Oliveira NFB, Kashipathy MM, Battaile KP, Douglas J, Lovell S, Machuqueiro M, Ladokhin AS. Histidine Protonation and Conformational Switching in Diphtheria Toxin Translocation Domain. Toxins. 15. PMID 37505680 DOI: 10.3390/toxins15070410 |
0.337 |
|
| 2023 |
Kyrychenko A, Ladokhin AS. Membrane interactions of apoptotic inhibitor Bcl-xL: What can be learned using fluorescence spectroscopy. Bba Advances. 3: 100076. PMID 37082264 DOI: 10.1016/j.bbadva.2023.100076 |
0.359 |
|
| 2022 |
Vasquez-Montes V, Goldberg AFX, Thévenin D, Ladokhin AS. Ca and Mg Influence the Thermodynamics of Peptide-Membrane Interactions. Journal of Molecular Biology. 434: 167826. PMID 36115657 DOI: 10.1016/j.jmb.2022.167826 |
0.337 |
|
| 2022 |
Kyrychenko A, Vasquez-Montes V, Ladokhin AS. Advantages of Quantitative Analysis of Depth-Dependent Fluorescence Quenching: Case Study of BAX. The Journal of Membrane Biology. PMID 34994819 DOI: 10.1007/s00232-021-00211-z |
0.367 |
|
| 2021 |
O'Neil PT, Vasquez-Montes V, Swint-Kruse L, Baldwin MR, Ladokhin AS. Spectroscopic evidence of tetanus toxin translocation domain bilayer-induced refolding and insertion. Biophysical Journal. 120: 4763-4776. PMID 34555358 DOI: 10.1016/j.bpj.2021.09.030 |
0.418 |
|
| 2021 |
Tyagi V, Vasquez-Montes V, Freites JA, Kyrychenko A, Tobias DJ, Ladokhin AS. Effects of Cardiolipin on the Conformational Dynamics of Membrane-Anchored Bcl-xL. International Journal of Molecular Sciences. 22. PMID 34502299 DOI: 10.3390/ijms22179388 |
0.344 |
|
| 2021 |
Ladokhin AS, Kyrychenko A, Rodnin MV, Vasquez-Montes V. Conformational switching, refolding and membrane insertion of the diphtheria toxin translocation domain. Methods in Enzymology. 649: 341-370. PMID 33712192 DOI: 10.1016/bs.mie.2020.12.016 |
0.445 |
|
| 2021 |
Vasquez-Montes V, Ladokhin AS. Expanding MPEx Hydropathy Analysis to Account for Electrostatic Contributions to Protein Interactions with Anionic Membranes. The Journal of Membrane Biology. 254: 109-117. PMID 33564913 DOI: 10.1007/s00232-021-00170-5 |
0.357 |
|
| 2020 |
Rodnin MV, Kashipathy MM, Kyrychenko A, Battaile KP, Lovell S, Ladokhin AS. Structure of the Diphtheria Toxin at Acidic pH: Implications for the Conformational Switching of the Translocation Domain. Toxins. 12. PMID 33171806 DOI: 10.3390/toxins12110704 |
0.359 |
|
| 2020 |
Rodnin MV, Vasquez-Montes V, Nepal B, Ladokhin AS, Lazaridis T. Experimental and Computational Characterization of Oxidized and Reduced Protegrin Pores in Lipid Bilayers. The Journal of Membrane Biology. 253: 287-298. PMID 32500172 DOI: 10.1007/S00232-020-00124-3 |
0.334 |
|
| 2020 |
Vasquez-Montes V, Kyrychenko A, Vargas-Uribe M, Rodnin MV, Ladokhin AS. Conformational Switching in Bcl-xL: Enabling Non-Canonic Inhibition of Apoptosis Involves Multiple Intermediates and Lipid Interactions. Cells. 9. PMID 32111007 DOI: 10.3390/cells9030539 |
0.359 |
|
| 2020 |
Kyrychenko A, Ladokhin AS. Location of TEMPO-PC in Lipid Bilayers: Implications for Fluorescence Quenching. The Journal of Membrane Biology. 253: 73-77. PMID 31541260 DOI: 10.1007/s00232-019-00094-1 |
0.308 |
|
| 2019 |
Vasquez-Montes V, Vargas-Uribe M, Pandey NK, Rodnin MV, Langen R, Ladokhin AS. Lipid-modulation of membrane insertion and refolding of the apoptotic inhibitor Bcl-xL. Biochimica Et Biophysica Acta. Proteins and Proteomics. PMID 31004798 DOI: 10.1016/J.Bbapap.2019.04.006 |
0.364 |
|
| 2018 |
Kyrychenko A, Lim NM, Vasquez-Montes V, Rodnin MV, Freites JA, Nguyen LP, Tobias DJ, Mobley DL, Ladokhin AS. Refining Protein Penetration into the Lipid Bilayer Using Fluorescence Quenching and Molecular Dynamics Simulations: The Case of Diphtheria Toxin Translocation Domain. The Journal of Membrane Biology. PMID 29550876 DOI: 10.1007/S00232-018-0030-2 |
0.448 |
|
| 2017 |
Vasquez-Montes V, Gerhart J, King KE, Thévenin D, Ladokhin AS. Comparison of lipid-dependent bilayer insertion of pHLIP and its P20G variant. Biochimica Et Biophysica Acta. PMID 29138065 DOI: 10.1016/J.Bbamem.2017.11.006 |
0.345 |
|
| 2017 |
Ladokhin AS, Vargas-Uribe M, Rodnin MV, Ghatak C, Sharma O. Cellular Entry of the Diphtheria Toxin Does Not Require the Formation of the Open-Channel State by Its Translocation Domain. Toxins. 9. PMID 28937631 DOI: 10.3390/Toxins9100299 |
0.625 |
|
| 2017 |
Kyrychenko A, Rodnin MV, Ghatak C, Ladokhin AS. Computational refinement of spectroscopic FRET measurements. Data in Brief. 12: 213-221. PMID 28459092 DOI: 10.1016/J.Dib.2017.03.041 |
0.57 |
|
| 2017 |
Milstein ML, Kimler VA, Ghatak C, Ladokhin AS, Goldberg AF. An Inducible Amphipathic Helix Within the Intrinsically Disordered C-terminus is not Required for Protein Biosynthesis, Trafficking, or GARP2 Interaction, but can Participate in Membrane Curvature Generation by Peripherin-2/rds. The Journal of Biological Chemistry. PMID 28325841 DOI: 10.1074/Jbc.M116.768143 |
0.61 |
|
| 2017 |
Kyrychenko A, Rodnin MV, Ghatak C, Ladokhin AS. Joint Refinement of FRET measurements using spectroscopic and computational tools. Analytical Biochemistry. PMID 28108168 DOI: 10.1016/J.Ab.2017.01.011 |
0.566 |
|
| 2017 |
Gnanasambandam R, Ghatak C, Yasmann A, Nishizawa K, Sachs F, Ladokhin AS, Sukharev SI, Suchyna TM. GsMTx4: Mechanism of Inhibiting Mechanosensitive Ion Channels. Biophysical Journal. 112: 31-45. PMID 28076814 DOI: 10.1016/J.Bpj.2016.11.013 |
0.577 |
|
| 2016 |
Rodnin MV, Li J, Gross ML, Ladokhin AS. The pH-Dependent Trigger in Diphtheria Toxin T Domain Comes with a Safety Latch. Biophysical Journal. 111: 1946-1953. PMID 27806276 DOI: 10.1016/J.Bpj.2016.09.030 |
0.326 |
|
| 2015 |
Ghatak C, Rodnin MV, Vargas-Uribe M, McCluskey AJ, Flores-Canales JC, Kurnikova M, Ladokhin AS. Role of acidic residues in helices TH8-TH9 in membrane interactions of the diphtheria toxin T domain. Toxins. 7: 1303-23. PMID 25875295 DOI: 10.3390/Toxins7041303 |
0.628 |
|
| 2015 |
Kyrychenko A, Vasquez-Montes V, Ulmschneider MB, Ladokhin AS. Lipid headgroups modulate membrane insertion of pHLIP peptide. Biophysical Journal. 108: 791-794. PMID 25692583 DOI: 10.1016/j.bpj.2015.01.002 |
0.307 |
|
| 2015 |
Flores-Canales JC, Vargas-Uribe M, Ladokhin AS, Kurnikova M. Membrane Association of the Diphtheria Toxin Translocation Domain Studied by Coarse-Grained Simulations and Experiment. The Journal of Membrane Biology. 248: 529-43. PMID 25650178 DOI: 10.1007/S00232-015-9771-3 |
0.439 |
|
| 2015 |
Rodnin MV, Ladokhin AS. Membrane translocation assay based on proteolytic cleavage: application to diphtheria toxin T domain. Biochimica Et Biophysica Acta. 1848: 35-40. PMID 25291602 DOI: 10.1016/j.bbamem.2014.09.013 |
0.4 |
|
| 2015 |
Vargas-Uribe M, Rodnin MV, Öjemalm K, Holgado A, Kyrychenko A, Nilsson I, Posokhov YO, Makhatadze G, von Heijne G, Ladokhin AS. Thermodynamics of Membrane Insertion and Refolding of the Diphtheria Toxin T-Domain. The Journal of Membrane Biology. 248: 383-94. PMID 25281329 DOI: 10.1007/S00232-014-9734-0 |
0.422 |
|
| 2015 |
Kyrychenko A, Rodnin MV, Ladokhin AS. Calibration of Distribution Analysis of the Depth of Membrane Penetration Using Simulations and Depth-Dependent Fluorescence Quenching. The Journal of Membrane Biology. 248: 583-94. PMID 25107303 DOI: 10.1007/s00232-014-9709-1 |
0.379 |
|
| 2014 |
Li J, Rodnin MV, Ladokhin AS, Gross ML. Hydrogen-deuterium exchange and mass spectrometry reveal the pH-dependent conformational changes of diphtheria toxin T domain. Biochemistry. 53: 6849-56. PMID 25290210 DOI: 10.1021/Bi500893Y |
0.332 |
|
| 2014 |
Ladokhin AS. Measuring membrane penetration with depth-dependent fluorescence quenching: distribution analysis is coming of age. Biochimica Et Biophysica Acta. 1838: 2289-95. PMID 24593994 DOI: 10.1016/j.bbamem.2014.02.019 |
0.399 |
|
| 2014 |
Kyrychenko A, Freites JA, He J, Tobias DJ, Wimley WC, Ladokhin AS. Structural plasticity in the topology of the membrane-interacting domain of HIV-1 gp41. Biophysical Journal. 106: 610-20. PMID 24507601 DOI: 10.1016/J.Bpj.2013.12.032 |
0.421 |
|
| 2014 |
Kyrychenko A, Ladokhin AS. Refining membrane penetration by a combination of steady-state and time-resolved depth-dependent fluorescence quenching. Analytical Biochemistry. 446: 19-21. PMID 24141077 DOI: 10.1016/j.ab.2013.10.015 |
0.308 |
|
| 2013 |
Vargas-Uribe M, Rodnin MV, Ladokhin AS. Comparison of membrane insertion pathways of the apoptotic regulator Bcl-xL and the diphtheria toxin translocation domain. Biochemistry. 52: 7901-9. PMID 24134052 DOI: 10.1021/bi400926k |
0.419 |
|
| 2013 |
Ladokhin AS. pH-triggered conformational switching along the membrane insertion pathway of the diphtheria toxin T-domain. Toxins. 5: 1362-80. PMID 23925141 DOI: 10.3390/toxins5081362 |
0.409 |
|
| 2013 |
Kurnikov IV, Kyrychenko A, Flores-Canales JC, Rodnin MV, Simakov N, Vargas-Uribe M, Posokhov YO, Kurnikova M, Ladokhin AS. pH-triggered conformational switching of the diphtheria toxin T-domain: the roles of N-terminal histidines. Journal of Molecular Biology. 425: 2752-64. PMID 23648837 DOI: 10.1016/J.Jmb.2013.04.030 |
0.407 |
|
| 2013 |
Vargas-Uribe M, Rodnin MV, Kienker P, Finkelstein A, Ladokhin AS. Crucial role of H322 in folding of the diphtheria toxin T-domain into the open-channel state. Biochemistry. 52: 3457-63. PMID 23621842 DOI: 10.1021/Bi400249F |
0.364 |
|
| 2013 |
Kyrychenko A, Tobias DJ, Ladokhin AS. Validation of depth-dependent fluorescence quenching in membranes by molecular dynamics simulation of tryptophan octyl ester in POPC bilayer. The Journal of Physical Chemistry. B. 117: 4770-8. PMID 23528135 DOI: 10.1021/Jp310638F |
0.321 |
|
| 2012 |
Kyrychenko A, Rodnin MV, Posokhov YO, Holt A, Pucci B, Killian JA, Ladokhin AS. Thermodynamic measurements of bilayer insertion of a single transmembrane helix chaperoned by fluorinated surfactants. Journal of Molecular Biology. 416: 328-34. PMID 22227387 DOI: 10.1016/J.Jmb.2011.12.037 |
0.356 |
|
| 2012 |
Kyrychenko A, Rodnin MV, Vargas-Uribe M, Sharma SK, Durand G, Pucci B, Popot JL, Ladokhin AS. Folding of diphtheria toxin T-domain in the presence of amphipols and fluorinated surfactants: Toward thermodynamic measurements of membrane protein folding. Biochimica Et Biophysica Acta. 1818: 1006-12. PMID 21945883 DOI: 10.1016/j.bbamem.2011.09.012 |
0.417 |
|
| 2011 |
Rodnin MV, Kyrychenko A, Kienker P, Sharma O, Vargas-Uribe M, Collier RJ, Finkelstein A, Ladokhin AS. Replacement of C-terminal histidines uncouples membrane insertion and translocation in diphtheria toxin T-domain. Biophysical Journal. 101: L41-3. PMID 22098755 DOI: 10.1016/J.Bpj.2011.10.018 |
0.413 |
|
| 2011 |
Fernández-Vidal M, White SH, Ladokhin AS. Membrane partitioning: "classical" and "nonclassical" hydrophobic effects. The Journal of Membrane Biology. 239: 5-14. PMID 21140141 DOI: 10.1007/S00232-010-9321-Y |
0.308 |
|
| 2010 |
Kyrychenko A, Wu F, Thummel RP, Waluk J, Ladokhin AS. Partitioning and localization of environment-sensitive 2-(2'-pyridyl)- and 2-(2'-pyrimidyl)-indoles in lipid membranes: a joint refinement using fluorescence measurements and molecular dynamics simulations. The Journal of Physical Chemistry. B. 114: 13574-84. PMID 20925327 DOI: 10.1021/Jp106981C |
0.317 |
|
| 2010 |
Rodnin MV, Kyrychenko A, Kienker P, Sharma O, Posokhov YO, Collier RJ, Finkelstein A, Ladokhin AS. Conformational switching of the diphtheria toxin T domain. Journal of Molecular Biology. 402: 1-7. PMID 20654627 DOI: 10.1016/J.Jmb.2010.07.024 |
0.412 |
|
| 2009 |
Ladokhin AS. Fluorescence spectroscopy in thermodynamic and kinetic analysis of pH-dependent membrane protein insertion. Methods in Enzymology. 466: 19-42. PMID 21609856 DOI: 10.1016/S0076-6879(09)66002-X |
0.386 |
|
| 2009 |
Kyrychenko A, Posokhov YO, Rodnin MV, Ladokhin AS. Kinetic intermediate reveals staggered pH-dependent transitions along the membrane insertion pathway of the diphtheria toxin T-domain. Biochemistry. 48: 7584-94. PMID 19588969 DOI: 10.1021/bi9009264 |
0.391 |
|
| 2008 |
Posokhov YO, Rodnin MV, Das SK, Pucci B, Ladokhin AS. FCS study of the thermodynamics of membrane protein insertion into the lipid bilayer chaperoned by fluorinated surfactants. Biophysical Journal. 95: L54-6. PMID 18708456 DOI: 10.1529/biophysj.108.141002 |
0.391 |
|
| 2008 |
Posokhov YO, Merzlyakov M, Hristova K, Ladokhin AS. A simple "proximity" correction for Förster resonance energy transfer efficiency determination in membranes using lifetime measurements. Analytical Biochemistry. 380: 134-6. PMID 18559252 DOI: 10.1016/j.ab.2008.05.041 |
0.353 |
|
| 2008 |
Posokhov YO, Rodnin MV, Lu L, Ladokhin AS. Membrane insertion pathway of annexin B12: thermodynamic and kinetic characterization by fluorescence correlation spectroscopy and fluorescence quenching. Biochemistry. 47: 5078-87. PMID 18407663 DOI: 10.1021/bi702223c |
0.395 |
|
| 2008 |
Rodnin MV, Posokhov YO, Contino-Pépin C, Brettmann J, Kyrychenko A, Palchevskyy SS, Pucci B, Ladokhin AS. Interactions of fluorinated surfactants with diphtheria toxin T-domain: testing new media for studies of membrane proteins. Biophysical Journal. 94: 4348-57. PMID 18310255 DOI: 10.1529/biophysj.107.126235 |
0.36 |
|
| 2007 |
Posokhov YO, Gottlieb PA, Morales MJ, Sachs F, Ladokhin AS. Is lipid bilayer binding a common property of inhibitor cysteine knot ion-channel blockers? Biophysical Journal. 93: L20-2. PMID 17573432 DOI: 10.1529/Biophysj.107.112375 |
0.324 |
|
| 2006 |
Palchevskyy SS, Posokhov YO, Olivier B, Popot JL, Pucci B, Ladokhin AS. Chaperoning of insertion of membrane proteins into lipid bilayers by hemifluorinated surfactants: application to diphtheria toxin. Biochemistry. 45: 2629-35. PMID 16489756 DOI: 10.1021/bi052257l |
0.318 |
|
| 2005 |
Ladokhin AS, Haigler HT. Reversible transition between the surface trimer and membrane-inserted monomer of annexin 12. Biochemistry. 44: 3402-9. PMID 15736950 DOI: 10.1021/Bi047805U |
0.373 |
|
| 2004 |
Ladokhin AS, Legmann R, Collier RJ, White SH. Reversible refolding of the diphtheria toxin T-domain on lipid membranes. Biochemistry. 43: 7451-8. PMID 15182188 DOI: 10.1021/Bi036157W |
0.389 |
|
| 2004 |
Ladokhin AS, White SH. Interfacial folding and membrane insertion of a designed helical peptide. Biochemistry. 43: 5782-91. PMID 15134452 DOI: 10.1021/Bi0361259 |
0.379 |
|
| 2002 |
Ladokhin AS, Isas JM, Haigler HT, White SH. Determining the membrane topology of proteins: insertion pathway of a transmembrane helix of annexin 12. Biochemistry. 41: 13617-26. PMID 12427023 DOI: 10.1021/Bi0264418 |
0.395 |
|
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