| Year |
Citation |
Score |
| 2019 |
Li J, Yu RY, Emran F, Chen BE, Hughes ME. Achilles-Mediated and Sex-Specific Regulation of Circadian mRNA Rhythms in Drosophila. Journal of Biological Rhythms. 748730419830845. PMID 30803307 DOI: 10.1177/0748730419830845 |
0.399 |
|
| 2018 |
Terry EE, Zhang X, Hoffmann C, Hughes LD, Lewis SA, Li J, Wallace MJ, Riley L, Douglas CM, Gutierrez-Montreal MA, Lahens NF, Gong MC, Andrade F, Esser KA, Hughes ME. Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues. Elife. 7. PMID 29809149 DOI: 10.7554/Elife.34613 |
0.662 |
|
| 2018 |
Schnytzer Y, Simon-Blecher N, Li J, Ben-Asher HW, Salmon-Divon M, Achituv Y, Hughes ME, Levy O. Tidal and diel orchestration of behaviour and gene expression in an intertidal mollusc. Scientific Reports. 8: 4917. PMID 29559663 DOI: 10.1038/s41598-018-23167-y |
0.42 |
|
| 2018 |
Terry EE, Zhang X, Hoffmann C, Hughes LD, Lewis SA, Li J, Wallace MJ, Riley LA, Douglas CM, Gutierrez-Monreal MA, Lahens NF, Gong MC, Andrade F, Esser KA, Hughes ME. Author response: Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues Elife. DOI: 10.7554/Elife.34613.040 |
0.655 |
|
| 2017 |
Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663 |
0.701 |
|
| 2017 |
Hughes LD, Lewis SA, Hughes ME. ExpressionDB: An open source platform for distributing genome-scale datasets. Plos One. 12: e0187457. PMID 29095940 DOI: 10.1371/Journal.Pone.0187457 |
0.408 |
|
| 2016 |
Li J, Terry EE, Fejer E, Gamba D, Hartmann N, Logsdon J, Michalski D, Rois LE, Scuderi MJ, Kunst M, Hughes ME. Achilles is a circadian clock-controlled gene that regulates immune function in Drosophila. Brain, Behavior, and Immunity. PMID 27856350 DOI: 10.1016/J.Bbi.2016.11.012 |
0.459 |
|
| 2016 |
Wu G, Anafi RC, Hughes ME, Kornacker K, Hogenesch JB. MetaCycle: an integrated R package to evaluate periodicity in large scale data. Bioinformatics (Oxford, England). PMID 27378304 DOI: 10.1093/Bioinformatics/Btw405 |
0.729 |
|
| 2015 |
Gong C, Li C, Qi X, Song Z, Wu J, Hughes ME, Li X. The daily rhythms of mitochondrial gene expression and oxidative stress regulation are altered by aging in the mouse liver. Chronobiology International. 32: 1254-63. PMID 26512910 DOI: 10.3109/07420528.2015.1085388 |
0.376 |
|
| 2015 |
Tranel HR, Schroder EA, England J, Black WS, Bush H, Hughes ME, Esser KA, Clasey JL. Physical activity, and not fat mass is a primary predictor of circadian parameters in young men. Chronobiology International. 32: 832-41. PMID 26101893 DOI: 10.3109/07420528.2015.1043011 |
0.36 |
|
| 2015 |
Li J, Grant GR, Hogenesch JB, Hughes ME. Considerations for RNA-seq analysis of circadian rhythms. Methods in Enzymology. 551: 349-67. PMID 25662464 DOI: 10.1016/Bs.Mie.2014.10.020 |
0.7 |
|
| 2014 |
Kunst M, Hughes ME, Raccuglia D, Felix M, Li M, Barnett G, Duah J, Nitabach MN. Calcitonin gene-related peptide neurons mediate sleep-specific circadian output in Drosophila. Current Biology : Cb. 24: 2652-64. PMID 25455031 DOI: 10.1016/J.Cub.2014.09.077 |
0.339 |
|
| 2014 |
Zhang R, Lahens NF, Ballance HI, Hughes ME, Hogenesch JB. A circadian gene expression atlas in mammals: implications for biology and medicine. Proceedings of the National Academy of Sciences of the United States of America. 111: 16219-24. PMID 25349387 DOI: 10.1073/Pnas.1408886111 |
0.745 |
|
| 2014 |
Anafi RC, Lee Y, Sato TK, Venkataraman A, Ramanathan C, Kavakli IH, Hughes ME, Baggs JE, Growe J, Liu AC, Kim J, Hogenesch JB. Machine learning helps identify CHRONO as a circadian clock component. Plos Biology. 12: e1001840. PMID 24737000 DOI: 10.1371/Journal.Pbio.1001840 |
0.68 |
|
| 2014 |
Hughes ME, Peeler J, Hogenesch JB, Trojanowski JQ. The growth and impact of Alzheimer disease centers as measured by social network analysis. Jama Neurology. 71: 412-20. PMID 24514750 DOI: 10.1001/Jamaneurol.2013.6225 |
0.526 |
|
| 2013 |
Li MD, Ruan HB, Hughes ME, Lee JS, Singh JP, Jones SP, Nitabach MN, Yang X. O-GlcNAc signaling entrains the circadian clock by inhibiting BMAL1/CLOCK ubiquitination. Cell Metabolism. 17: 303-10. PMID 23395176 DOI: 10.1016/J.Cmet.2012.12.015 |
0.386 |
|
| 2012 |
Hughes ME, Hong HK, Chong JL, Indacochea AA, Lee SS, Han M, Takahashi JS, Hogenesch JB. Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue. Plos Genetics. 8: e1002835. PMID 22844252 DOI: 10.1371/Journal.Pgen.1002835 |
0.682 |
|
| 2012 |
Hughes ME, Grant GR, Paquin C, Qian J, Nitabach MN. Deep sequencing the circadian and diurnal transcriptome of Drosophila brain. Genome Research. 22: 1266-81. PMID 22472103 DOI: 10.1101/Gr.128876.111 |
0.498 |
|
| 2012 |
Silver AC, Arjona A, Hughes ME, Nitabach MN, Fikrig E. Circadian expression of clock genes in mouse macrophages, dendritic cells, and B cells. Brain, Behavior, and Immunity. 26: 407-13. PMID 22019350 DOI: 10.1016/J.Bbi.2011.10.001 |
0.44 |
|
| 2011 |
Miyazaki M, Schroder E, Edelmann SE, Hughes ME, Kornacker K, Balke CW, Esser KA. Age-associated disruption of molecular clock expression in skeletal muscle of the spontaneously hypertensive rat. Plos One. 6: e27168. PMID 22076133 DOI: 10.1371/Journal.Pone.0027168 |
0.396 |
|
| 2011 |
Xu K, DiAngelo JR, Hughes ME, Hogenesch JB, Sehgal A. The circadian clock interacts with metabolic physiology to influence reproductive fitness. Cell Metabolism. 13: 639-54. PMID 21641546 DOI: 10.1016/J.Cmet.2011.05.001 |
0.627 |
|
| 2010 |
Hughes ME, Peeler J, Hogenesch JB. Network dynamics to evaluate performance of an academic institution. Science Translational Medicine. 2: 53ps49. PMID 20944088 DOI: 10.1126/Scitranslmed.3001580 |
0.533 |
|
| 2010 |
Hughes ME, Hogenesch JB, Kornacker K. JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. Journal of Biological Rhythms. 25: 372-80. PMID 20876817 DOI: 10.1177/0748730410379711 |
0.675 |
|
| 2010 |
Baggs JE, Hughes ME, Hogenesch JB. The network as the target. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 127-33. PMID 20836017 DOI: 10.1002/Wsbm.57 |
0.722 |
|
| 2009 |
Hughes ME, DiTacchio L, Hayes KR, Vollmers C, Pulivarthy S, Baggs JE, Panda S, Hogenesch JB. Harmonics of circadian gene transcription in mammals. Plos Genetics. 5: e1000442. PMID 19343201 DOI: 10.1371/Journal.Pgen.1000442 |
0.777 |
|
| 2007 |
Hughes M, Deharo L, Pulivarthy SR, Gu J, Hayes K, Panda S, Hogenesch JB. High-resolution time course analysis of gene expression from pituitary. Cold Spring Harbor Symposia On Quantitative Biology. 72: 381-6. PMID 18419295 DOI: 10.1101/Sqb.2007.72.011 |
0.787 |
|
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