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Keyan Zhao, Ph.D. - Publications

Affiliations: 
2007 Biology: Doctor of Philosophy University of Southern California, Los Angeles, CA, United States 
Area:
Bioinformatics Biology
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li Q, Zhao K, Bustamante CD, Ma X, Wong WH. Xrare: a machine learning method jointly modeling phenotypes and genetic evidence for rare disease diagnosis. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 30675030 DOI: 10.1038/S41436-019-0439-8  0.338
2016 Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, ... ... Zhao K, et al. Extensive sequencing of seven human genomes to characterize benchmark reference materials. Scientific Data. 3: 160025. PMID 27271295 DOI: 10.1038/Sdata.2016.25  0.508
2013 Clark RT, Famoso AN, Zhao K, Shaff JE, Craft EJ, Bustamante CD, McCouch SR, Aneshansley DJ, Kochian LV. High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development. Plant, Cell & Environment. 36: 454-66. PMID 22860896 DOI: 10.1111/J.1365-3040.2012.02587.X  0.382
2012 Kim J, Zhao K, Jiang P, Lu ZX, Wang J, Murray JC, Xing Y. Transcriptome landscape of the human placenta. Bmc Genomics. 13: 115. PMID 22448651 DOI: 10.1186/1471-2164-13-115  0.318
2012 Thomson MJ, Zhao K, Wright M, McNally KL, Rey J, Tung CW, Reynolds A, Scheffler B, Eizenga G, McClung A, Kim H, Ismail AM, de Ocampo M, Mojica C, Reveche MY, et al. High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform Molecular Breeding. 29: 875-886. DOI: 10.1007/S11032-011-9663-X  0.548
2011 Zhao K, Tung CW, Eizenga GC, Wright MH, Ali ML, Price AH, Norton GJ, Islam MR, Reynolds A, Mezey J, McClung AM, Bustamante CD, McCouch SR. Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nature Communications. 2: 467. PMID 21915109 DOI: 10.1038/Ncomms1467  0.636
2011 Famoso AN, Zhao K, Clark RT, Tung CW, Wright MH, Bustamante C, Kochian LV, McCouch SR. Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. Plos Genetics. 7: e1002221. PMID 21829395 DOI: 10.1371/Journal.Pgen.1002221  0.527
2011 Guo G, Zhou Z, Wang Y, Zhao K, Zhu L, Lust G, Hunter L, Friedenberg S, Li J, Zhang Y, Harris S, Jones P, Sandler J, Krotscheck U, Todhunter R, et al. Canine Hip Dysplasia is Predictable by Genotyping Osteoarthritis and Cartilage. 19: 420-429. PMID 21215318 DOI: 10.1016/J.Joca.2010.12.011  0.478
2010 Wright MH, Tung CW, Zhao K, Reynolds A, McCouch SR, Bustamante CD. ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations. Bioinformatics (Oxford, England). 26: 2952-60. PMID 20926420 DOI: 10.1093/Bioinformatics/Btq533  0.36
2010 Boyko AR, Quignon P, Li L, Schoenebeck JJ, Degenhardt JD, Lohmueller KE, Zhao K, Brisbin A, Parker HG, vonHoldt BM, Cargill M, Auton A, Reynolds A, Elkahloun AG, Castelhano M, et al. A simple genetic architecture underlies morphological variation in dogs. Plos Biology. 8: e1000451. PMID 20711490 DOI: 10.1371/Journal.Pbio.1000451  0.594
2010 Zhao K, Wright M, Kimball J, Eizenga G, McClung A, Kovach M, Tyagi W, Ali ML, Tung CW, Reynolds A, Bustamante CD, McCouch SR. Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. Plos One. 5: e10780. PMID 20520727 DOI: 10.1371/Journal.Pone.0010780  0.637
2010 Nemri A, Atwell S, Tarone AM, Huang YS, Zhao K, Studholme DJ, Nordborg M, Jones JD. Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proceedings of the National Academy of Sciences of the United States of America. 107: 10302-7. PMID 20479233 DOI: 10.1073/Pnas.0913160107  0.712
2010 McCouch SR, Zhao K, Wright M, Tung CW, Ebana K, Thomson M, Reynolds A, Wang D, Declerck G, Ali ML, Mcclung A, Eizenga G, Bustamante C. Development of genome-wide SNP assays for rice Breeding Science. 60: 524-535. DOI: 10.1270/Jsbbs.60.524  0.598
2010 Ostrander EA, Boyko A, Quignon P, Li L, Schoenebeck JJ, Degenhardt JD, Lohmueller KE, Zhao K, Brisbin A, Parker HG, Holdt BMV, Cargill M, Auton A, Reynolds A, Elkahloun AG, et al. Tracking genes and finding mutations: finding genes for complex traits in the domestic dog (Canis familiaris) Genome Biology. 11: 1-1. DOI: 10.1186/Gb-2010-11-S1-I23  0.577
2010 Tung CW, Zhao K, Wright MH, Ali ML, Jung J, Kimball J, Tyagi W, Thomson MJ, McNally K, Leung H, Kim H, Ahn SN, Reynolds A, Scheffler B, Eizenga G, et al. Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) Rice. 3: 205-217. DOI: 10.1007/S12284-010-9056-5  0.487
2009 McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, et al. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America. 106: 12273-8. PMID 19597147 DOI: 10.1073/Pnas.0900992106  0.805
2009 Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, Gill CA, Green RD, Hamernik DL, Kappes SM, Lien S, Matukumalli LK, McEwan JC, Nazareth LV, Schnabel RD, ... ... Zhao K, et al. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (New York, N.Y.). 324: 528-32. PMID 19390050 DOI: 10.1126/Science.1167936  0.614
2008 Baxter I, Muthukumar B, Park HC, Buchner P, Lahner B, Danku J, Zhao K, Lee J, Hawkesford MJ, Guerinot ML, Salt DE. Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is controlled by a mitochondrial molybdenum transporter (MOT1). Plos Genetics. 4: e1000004. PMID 18454190 DOI: 10.1371/Journal.Pgen.1000004  0.322
2007 Zhao K, Nordborg M, Marjoram P. Genome-wide association mapping using mixed-models: application to GAW15 Problem 3. Bmc Proceedings. 1: S164. PMID 18466510 DOI: 10.1186/1753-6561-1-S1-S164  0.696
2007 Jung H, Zhao K, Marjoram P. Cladistic analysis of genotype data-application to GAW15 Problem 3. Bmc Proceedings. 1: S125. PMID 18466467 DOI: 10.1186/1753-6561-1-S1-S125  0.529
2007 Dupuis J, Albers K, Allen-Brady K, Cho K, Elston RC, Kappen HJ, Tang H, Thomas A, Thomson G, Tsung E, Yang Q, Zhang W, Zhao K, Zheng G, Ziegler JT. Effect of linkage disequilibrium between markers in linkage and association analyses. Genetic Epidemiology. 31: S139-48. PMID 18046770 DOI: 10.1002/Gepi.20291  0.451
2007 Sutter NB, Bustamante CD, Chase K, Gray MM, Zhao K, Zhu L, Padhukasahasram B, Karlins E, Davis S, Jones PG, Quignon P, Johnson GS, Parker HG, Fretwell N, Mosher DS, et al. A single IGF1 allele is a major determinant of small size in dogs. Science (New York, N.Y.). 316: 112-5. PMID 17412960 DOI: 10.1126/Science.1137045  0.788
2007 Zhao K, Aranzana MJ, Kim S, Lister C, Shindo C, Tang C, Toomajian C, Zheng H, Dean C, Marjoram P, Nordborg M. An Arabidopsis example of association mapping in structured samples. Plos Genetics. 3: e4. PMID 17238287 DOI: 10.1371/Journal.Pgen.0030004  0.771
2006 Toomajian C, Hu TT, Aranzana MJ, Lister C, Tang C, Zheng H, Zhao K, Calabrese P, Dean C, Nordborg M. A nonparametric test reveals selection for rapid flowering in the Arabidopsis genome. Plos Biology. 4: e137. PMID 16623598 DOI: 10.1371/Journal.Pbio.0040137  0.743
2006 Kim S, Zhao K, Jiang R, Molitor J, Borevitz JO, Nordborg M, Marjoram P. Association mapping with single-feature polymorphisms. Genetics. 173: 1125-33. PMID 16510789 DOI: 10.1534/Genetics.105.052720  0.685
2005 Molitor J, Zhao K, Marjoram P. Fine mapping--19th century style. Bmc Genetics. 6: S63. PMID 16451676 DOI: 10.1186/1471-2156-6-S1-S63  0.358
2005 Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, et al. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. Plos Genetics. 1: e60. PMID 16292355 DOI: 10.1371/Journal.Pgen.0010060  0.79
2005 Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, Zheng H, Bakker E, Calabrese P, Gladstone J, Goyal R, Jakobsson M, Kim S, Morozov Y, Padhukasahasram B, Plagnol V, ... ... Zhao K, et al. The pattern of polymorphism in Arabidopsis thaliana. Plos Biology. 3: e196. PMID 15907155 DOI: 10.1371/Journal.Pbio.0030196  0.766
2005 Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, et al. Genome-wide association mapping in Arabidopsis thaliana identifies previously known genes responsible for variation in flowering time and pathogen resistance Plos Genetics. DOI: 10.1371/Journal.Pgen.0010060.Eor  0.763
2004 Hagenblad J, Tang C, Molitor J, Werner J, Zhao K, Zheng H, Marjoram P, Weigel D, Nordborg M. Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics. 168: 1627-38. PMID 15579712 DOI: 10.1534/Genetics.104.029470  0.816
2004 Wiuf C, Zhao K, Innan H, Nordborg M. The probability and chromosomal extent of trans-specific polymorphism. Genetics. 168: 2363-72. PMID 15371365 DOI: 10.1534/Genetics.104.029488  0.648
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