Markus Willard Covert

2003 University of California, San Diego, La Jolla, CA 
"Markus Covert"


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Bernhard O. Palsson grad student 2003 UCSD
 (Transcriptional regulation in Escherichia coli: A systems biology approach.)


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Marta Andres-Terre grad student (ID Tree)
Elsa Birch grad student Stanford
Jacob Hughey grad student Stanford
Jonathan Karr grad student Stanford
Jayodita Sanghvi grad student Stanford
Keara Lane post-doc Northwestern
David Van Valen post-doc UCSD (Physics Tree)
Sergi Regot post-doc 2011-2015 Johns Hopkins Medical School
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Macklin DN, Ahn-Horst TA, Choi H, et al. (2020) Simultaneous cross-evaluation of heterogeneous datasets via mechanistic simulation. Science (New York, N.Y.). 369
Bodner K, Melkonian AL, Barth AIM, et al. (2020) Engineered Fluorescent E. coli Lysogens Allow Live-Cell Imaging of Functional Prophage Induction Triggered inside Macrophages. Cell Systems
DeFelice MM, Clark HR, Hughey JJ, et al. (2019) NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop. Science Signaling. 12
Jeknić S, Kudo T, Covert MW. (2019) Techniques for Studying Decoding of Single Cell Dynamics. Frontiers in Immunology. 10: 755
Lane K, Andres-Terre M, Kudo T, et al. (2019) Escalating Threat Levels of Bacterial Infection Can Be Discriminated by Distinct MAPK and NF-κB Signaling Dynamics in Single Host Cells. Cell Systems
Gutschow MV, Mason JC, Lane KM, et al. (2018) Combinatorial processing of bacterial and host-derived innate immune stimuli at the single-cell level. Molecular Biology of the Cell. mbcE18070423
Kudo T, Jeknić S, Macklin DN, et al. (2018) Live-cell measurements of kinase activity in single cells using translocation reporters. Nature Protocols. 13: 155-169
Lane K, Van Valen D, DeFelice MM, et al. (2017) Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation. Cell Systems
Van Valen DA, Kudo T, Lane KM, et al. (2016) Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments. Plos Computational Biology. 12: e1005177
Koechlein CS, Harris JR, Lee TK, et al. (2016) High-resolution imaging and computational analysis of haematopoietic cell dynamics in vivo. Nature Communications. 7: 12169
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