Markus Willard Covert

Affiliations: 
2003 University of California, San Diego, La Jolla, CA 
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"Markus Covert"

Parents

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Bernhard O. Palsson grad student 2003 UCSD
 (Transcriptional regulation in Escherichia coli: A systems biology approach.)

Children

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Marta Andres-Terre grad student (ID Tree)
Elsa Birch grad student Stanford
Jacob Hughey grad student Stanford
Jonathan Karr grad student Stanford
Jayodita Sanghvi grad student Stanford
Keara Lane post-doc Northwestern
David Van Valen post-doc UCSD (Physics Tree)
Sergi Regot post-doc 2011-2015 Johns Hopkins Medical School
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Publications

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Skalnik CJ, Cheah SY, Yang MY, et al. (2023) Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses. Plos Computational Biology. 19: e1011232
Ahn-Horst TA, Mille LS, Sun G, et al. (2022) An expanded whole-cell model of E. coli links cellular physiology with mechanisms of growth rate control. Npj Systems Biology and Applications. 8: 30
Kudo T, Lane K, Covert MW. (2022) A multiplexed epitope barcoding strategy that enables dynamic cellular phenotypic screens. Cell Systems
Maritan M, Autin L, Karr J, et al. (2021) Building Structural Models of a Whole Mycoplasma Cell. Journal of Molecular Biology. 434: 167351
Macklin DN, Ahn-Horst TA, Choi H, et al. (2020) Simultaneous cross-evaluation of heterogeneous datasets via mechanistic simulation. Science (New York, N.Y.). 369
Yang HW, Cappell SD, Jaimovich A, et al. (2020) Stress-mediated exit to quiescence restricted by increasing persistence in CDK4/6 activation. Elife. 9
Bodner K, Melkonian AL, Barth AIM, et al. (2020) Engineered Fluorescent E. coli Lysogens Allow Live-Cell Imaging of Functional Prophage Induction Triggered inside Macrophages. Cell Systems
Moen E, Bannon D, Kudo T, et al. (2019) Deep learning for cellular image analysis. Nature Methods
DeFelice MM, Clark HR, Hughey JJ, et al. (2019) NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop. Science Signaling. 12
Jeknić S, Kudo T, Covert MW. (2019) Techniques for Studying Decoding of Single Cell Dynamics. Frontiers in Immunology. 10: 755
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