Vadim Alexandrov, Ph.D.

Affiliations: 
Yale University, New Haven, CT 
Area:
Computational Biology and Bioinformatics
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"Vadim Alexandrov"

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Mark B. Gerstein grad student 2004 Yale
 (Three-dimensional hidden Markov models and normal mode analysis for modeling protein structure and motion in a statistical framework.)
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Publications

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Alexandrov VA, Didenco PI, Kulikauskas VS, et al. (2010) Ion motion in a system of partially ordered nanotubes Bulletin of the Russian Academy of Sciences: Physics. 74: 1633-1636
Killeen AA, Ossina N, McGlennen RC, et al. (2006) Protein self-organization patterns in dried serum reveal changes in B-cell disorders. Molecular Diagnosis & Therapy. 10: 371-80
Alexandrov V, Lehnert U, Echols N, et al. (2005) Normal modes for predicting protein motions: a comprehensive database assessment and associated Web tool. Protein Science : a Publication of the Protein Society. 14: 633-43
Alexandrov V, Gerstein M. (2004) Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures. Bmc Bioinformatics. 5: 2
Krebs WG, Tsai J, Alexandrov V, et al. (2003) Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences. Methods in Enzymology. 374: 544-84
Pajak J, Ramaekers R, Rospenk M, et al. (2003) Matrix-isolation FT-IR studies and theoretical calculations of the vibrational properties of 4-methyl-2′-hydroxy-4′-ethyloxyazobenzene Chemical Physics. 286: 193-204
Krebs WG, Alexandrov V, Wilson CA, et al. (2002) Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic. Proteins. 48: 682-95
Liu Y, Luscombe NM, Alexandrov V, et al. (2002) Structural genomics: a new era for pharmaceutical research. Genome Biology. 3: REPORTS4004
Qian J, Stenger B, Wilson CA, et al. (2001) PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information. Nucleic Acids Research. 29: 1750-64
Alexandrov V, Gerstein M. (2001) Calculating populations of subcellular compartments using density matrix formalism International Journal of Quantum Chemistry. 85: 693-696
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