William Stafford Noble

Affiliations: 
1999-2002 Computer Science Columbia University, New York, NY 
 2002- Genome Sciences University of Washington, Seattle, Seattle, WA 
Area:
modeling biological processes at the molecular level
Website:
http://www.gs.washington.edu/faculty/noble.htm
Google:
"William Noble"
Bio:

http://noble.gs.washington.edu/

Cross-listing: Neurotree

Parents

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Charles Elkan grad student 1998 UCSD
 (A Bayesian approach to motif-based protein modeling)
David Henry Haussler post-doc 1999 UC Santa Cruz

Children

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Darrin P. Lewis grad student Columbia (Neurotree)
Lindsay Pino grad student University of Washington (Chemistry Tree)
Aaron A. Klammer grad student 2008 University of Washington (Neurotree)
Xiaoyu Chen grad student 2011 University of Washington (Neurotree)
Benjamin J. Diament grad student 2011 University of Washington (Neurotree)
Oliver Serang grad student 2011 University of Washington (Neurotree)
Ritambhara Singh post-doc University of Washington (MathTree)
William E Fondrie post-doc 2018- University of Washington (Chemistry Tree)
Michael M. Hoffman post-doc 2008-2013 University of Washington
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Publications

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Perez-Riverol Y, Bittremieux W, Noble WS, et al. (2025) Open-Source and FAIR Research Software for Proteomics. Journal of Proteome Research. 24: 2222-2234
Bittremieux W, Ananth V, Fondrie WE, et al. (2024) Deep Learning Methods for De Novo Peptide Sequencing. Mass Spectrometry Reviews
Solivais AJ, Boekweg H, Smith LM, et al. (2024) Improved detection of differentially abundant proteins through FDR-control of peptide-identity-propagation. Biorxiv : the Preprint Server For Biology
Dekker J, Oksuz BA, Zhang Y, et al. (2024) An integrated view of the structure and function of the human 4D nucleome. Biorxiv : the Preprint Server For Biology
Libbrecht MW, Hoffman MM, Bilmes JA, et al. (2024) Entropic Graph-based Posterior Regularization. Proceedings of the ... International Conference On Machine Learning. International Conference On Machine Learning. 37: 1992-2001
Wen B, Hsu C, Zeng WF, et al. (2024) Carafe enables high quality spectral library generation for data-independent acquisition proteomics. Biorxiv : the Preprint Server For Biology
Melendez C, Sanders J, Yilmaz M, et al. (2024) Accounting for Digestion Enzyme Bias in Casanovo. Journal of Proteome Research
Yilmaz M, Fondrie WE, Bittremieux W, et al. (2024) Sequence-to-sequence translation from mass spectra to peptides with a transformer model. Nature Communications. 15: 6427
Ananth V, Sanders J, Yilmaz M, et al. (2024) A learned score function improves the power of mass spectrometry database search. Bioinformatics (Oxford, England). 40: i410-i417
Freestone J, Noble WS, Keich U. (2024) Reinvestigating the Correctness of Decoy-Based False Discovery Rate Control in Proteomics Tandem Mass Spectrometry. Journal of Proteome Research
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