| Year |
Citation |
Score |
| 2020 |
Chowdhury S, Fong SS. Leveraging genome-scale metabolic models for human health applications. Current Opinion in Biotechnology. 66: 267-276. PMID 33120253 DOI: 10.1016/j.copbio.2020.08.017 |
0.314 |
|
| 2019 |
Yan Q, Robert S, Brooks JP, Fong SS. Metabolic characterization of the chitinolytic bacterium Serratia marcescens using a genome-scale metabolic model. Bmc Bioinformatics. 20: 227. PMID 31060515 DOI: 10.1186/S12859-019-2826-1 |
0.575 |
|
| 2019 |
Roell GW, Zha J, Carr RR, Koffas MA, Fong SS, Tang YJ. Engineering microbial consortia by division of labor. Microbial Cell Factories. 18: 35. PMID 30736778 DOI: 10.1186/S12934-019-1083-3 |
0.451 |
|
| 2018 |
Yan Q, Fong SS. Increasing carbon source uptake rates to improve chemical productivity in metabolic engineering. Current Opinion in Biotechnology. 53: 254-263. PMID 30301537 DOI: 10.1016/J.Copbio.2018.06.001 |
0.505 |
|
| 2018 |
Yan Q, Fong SS. Cloning and characterization of a chitinase from reveals Tfu_0580 as a thermostable and acidic endochitinase. Biotechnology Reports (Amsterdam, Netherlands). 19: e00274. PMID 30094208 DOI: 10.1016/J.Btre.2018.E00274 |
0.4 |
|
| 2018 |
Yan Q, Fong SS. Design and modularized optimization of one-step production of N-acetylneuraminic acid from chitin in Serratia marcescens. Biotechnology and Bioengineering. PMID 29959865 DOI: 10.1002/Bit.26782 |
0.463 |
|
| 2017 |
Vanee N, Brooks JP, Fong SS. Metabolic Profile of the Cellulolytic Industrial Actinomycete Thermobifida fusca. Metabolites. 7. PMID 29137138 DOI: 10.3390/Metabo7040057 |
0.793 |
|
| 2017 |
Yan Q, Fong SS. Challenges and Advances for Genetic Engineering of Non-model Bacteria and Uses in Consolidated Bioprocessing. Frontiers in Microbiology. 8: 2060. PMID 29123506 DOI: 10.3389/Fmicb.2017.02060 |
0.571 |
|
| 2017 |
Yan Q, Fong SS. Study of in vitro transcriptional binding effects and noise using constitutive promoters combined with UP element sequences in Escherichia coli. Journal of Biological Engineering. 11: 33. PMID 29118850 DOI: 10.1186/S13036-017-0075-2 |
0.389 |
|
| 2017 |
Yan Q, Hong E, Fong SS. Study of ChiR function in Serratia marcescens and its application for improving 2,3-butanediol from crystal chitin. Applied Microbiology and Biotechnology. PMID 28884384 DOI: 10.1007/S00253-017-8488-X |
0.453 |
|
| 2017 |
Şeref O, Brooks JP, Huang B, Fong SS. Enumeration and Cartesian Product Decomposition of Alternate Optimal Fluxes in Cellular Metabolism Informs Journal On Computing. 29: 197-210. DOI: 10.1287/Ijoc.2016.0724 |
0.391 |
|
| 2016 |
Miller IJ, Weyna TR, Fong SS, Lim-Fong GE, Kwan JC. Single sample resolution of rare microbial dark matter in a marine invertebrate metagenome. Scientific Reports. 6: 34362. PMID 27681823 DOI: 10.1038/Srep34362 |
0.321 |
|
| 2016 |
Miller IJ, Vanee N, Fong SS, Lim-Fong GE, Kwan JC. Lack of overt genome reduction in the bryostatin-producing bryozoan symbiont, "Candidatus Endobugula sertula". Applied and Environmental Microbiology. PMID 27590822 DOI: 10.1128/Aem.01800-16 |
0.778 |
|
| 2016 |
Wu G, Yan Q, Jones JA, Tang YJ, Fong SS, Koffas MA. Metabolic Burden: Cornerstones in Synthetic Biology and Metabolic Engineering Applications. Trends in Biotechnology. PMID 26996613 DOI: 10.1016/J.Tibtech.2016.02.010 |
0.591 |
|
| 2015 |
Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, et al. Do genome-scale models need exact solvers or clearer standards? Molecular Systems Biology. 11: 831. PMID 26467284 DOI: 10.15252/Msb.20156157 |
0.666 |
|
| 2015 |
Deng Y, Fisher AB, Fong SS. Systematic analysis of intracellular mechanisms of propanol production in the engineered Thermobifida fusca B6 strain. Applied Microbiology and Biotechnology. 99: 8089-100. PMID 26227414 DOI: 10.1007/S00253-015-6850-4 |
0.549 |
|
| 2015 |
Currie DH, Raman B, Gowen CM, Tschaplinski TJ, Land ML, Brown SD, Covalla SF, Klingeman DM, Yang ZK, Engle NL, Johnson CM, Rodriguez M, Shaw AJ, Kenealy WR, Lynd LR, ... Fong SS, et al. Genome-scale resources for Thermoanaerobacterium saccharolyticum. Bmc Systems Biology. 9: 30. PMID 26111937 DOI: 10.1186/S12918-015-0159-X |
0.778 |
|
| 2015 |
Yan Q, Fong SS. Bacterial chitinase: nature and perspectives for sustainable bioproduction Bioresources and Bioprocessing. 2. DOI: 10.1186/S40643-015-0057-5 |
0.482 |
|
| 2014 |
Fong SS. Computational approaches to metabolic engineering utilizing systems biology and synthetic biology. Computational and Structural Biotechnology Journal. 11: 28-34. PMID 25379141 DOI: 10.1016/J.Csbj.2014.08.005 |
0.408 |
|
| 2014 |
Vanee N, Brooks JP, Spicer V, Shamshurin D, Krokhin O, Wilkins JA, Deng Y, Fong SS. Proteomics-based metabolic modeling and characterization of the cellulolytic bacterium Thermobifida fusca. Bmc Systems Biology. 8: 86. PMID 25115351 DOI: 10.1186/S12918-014-0086-2 |
0.805 |
|
| 2014 |
Apte AA, Senger RS, Fong SS. Designing novel cellulase systems through agent-based modeling and global sensitivity analysis. Bioengineered. 5: 243-53. PMID 24830736 DOI: 10.4161/Bioe.29160 |
0.6 |
|
| 2014 |
Senger RS, Yen JY, Fong SS. A review of genome-scale metabolic flux modeling of anaerobiosis in biotechnology Current Opinion in Chemical Engineering. 6: 33-42. DOI: 10.1016/J.Coche.2014.08.003 |
0.49 |
|
| 2013 |
Fisher AB, Canfield ZB, Hayward LC, Fong SS, McArthur GH. Ex vivo DNA Assembly. Frontiers in Bioengineering and Biotechnology. 1: 12. PMID 25024067 DOI: 10.3389/Fbioe.2013.00012 |
0.701 |
|
| 2013 |
Seref O, Brooks JP, Fong SS. Decomposition of flux distributions into metabolic pathways. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 984-93. PMID 24334391 DOI: 10.1109/Tcbb.2013.115 |
0.412 |
|
| 2013 |
Gowen CM, Fong SS. Linking RNA measurements and proteomics with genome-scale models. Methods in Molecular Biology (Clifton, N.J.). 985: 429-45. PMID 23417816 DOI: 10.1007/978-1-62703-299-5_21 |
0.811 |
|
| 2012 |
Vanee N, Fisher AB, Fong SS. Evolutionary engineering for industrial microbiology. Sub-Cellular Biochemistry. 64: 43-71. PMID 23080245 DOI: 10.1007/978-94-007-5055-5_3 |
0.752 |
|
| 2012 |
Brooks JP, Burns WP, Fong SS, Gowen CM, Roberts SB. Gap detection for genome-scale constraint-based models. Advances in Bioinformatics. 2012: 323472. PMID 22997515 DOI: 10.1155/2012/323472 |
0.797 |
|
| 2012 |
Vanee N, Roberts SB, Riggs MJ, Rao RR, Fong SS. Identification of metabolic changes in genetically unstable stem cells by using model analysis of gene expression. Chemistry & Biodiversity. 9: 911-29. PMID 22589092 DOI: 10.1002/Cbdv.201100390 |
0.773 |
|
| 2011 |
Deng Y, Fong SS. Laboratory evolution and multi-platform genome re-sequencing of the cellulolytic actinobacterium Thermobifida fusca. The Journal of Biological Chemistry. 286: 39958-66. PMID 21914801 DOI: 10.1074/Jbc.M111.239616 |
0.335 |
|
| 2011 |
Gowen CM, Fong SS. Applications of systems biology towards microbial fuel production. Trends in Microbiology. 19: 516-24. PMID 21871807 DOI: 10.1016/J.Tim.2011.07.005 |
0.779 |
|
| 2011 |
Deng Y, Fong SS. Metabolic engineering of Thermobifida fusca for direct aerobic bioconversion of untreated lignocellulosic biomass to 1-propanol. Metabolic Engineering. 13: 570-7. PMID 21757023 DOI: 10.1016/J.Ymben.2011.06.007 |
0.352 |
|
| 2011 |
Apte A, Senger RS, Fong SS. Designing novel cellulase systems through agent based modeling and global sensitivity analysis 11aiche - 2011 Aiche Annual Meeting, Conference Proceedings. |
0.518 |
|
| 2010 |
Taylor DT, Cain JW, Bonchev DG, Fong SS, Apte AA, Pace LE. Toward a classification of isodynamic feed-forward motifs. Journal of Biological Dynamics. 4: 196-211. PMID 22876986 DOI: 10.1080/17513750903144461 |
0.575 |
|
| 2010 |
Bower AG, McClintock MK, Fong SS. Synthetic biology: a foundation for multi-scale molecular biology. Bioengineered Bugs. 1: 309-12. PMID 21326830 DOI: 10.4161/Bbug.1.5.12391 |
0.323 |
|
| 2010 |
Gowen CM, Fong SS. Genome-scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum. Biotechnology Journal. 5: 759-67. PMID 20665646 DOI: 10.1002/Biot.201000084 |
0.814 |
|
| 2010 |
Apte A, Bonchev D, Fong S. Cellular automata modeling of FASL-initiated apoptosis. Chemistry & Biodiversity. 7: 1163-72. PMID 20491073 DOI: 10.1002/Cbdv.200900422 |
0.558 |
|
| 2010 |
Gowen CM, Fong SS. Exploring biodiversity for cellulosic biofuel production. Chemistry & Biodiversity. 7: 1086-97. PMID 20491068 DOI: 10.1002/Cbdv.200900314 |
0.805 |
|
| 2010 |
Vanee N, Roberts SB, Fong SS, Manque P, Buck GA. A genome-scale metabolic model of Cryptosporidium hominis. Chemistry & Biodiversity. 7: 1026-39. PMID 20491062 DOI: 10.1002/Cbdv.200900323 |
0.791 |
|
| 2010 |
Roberts SB, Gowen CM, Brooks JP, Fong SS. Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production. Bmc Systems Biology. 4: 31. PMID 20307315 DOI: 10.1186/1752-0509-4-31 |
0.824 |
|
| 2010 |
Deng Y, Fong SS. Development and application of a PCR-targeted gene disruption method for studying CelR function in Thermobifida fusca. Applied and Environmental Microbiology. 76: 2098-106. PMID 20097808 DOI: 10.1128/Aem.02626-09 |
0.311 |
|
| 2010 |
McArthur GH, Fong SS. Toward engineering synthetic microbial metabolism. Journal of Biomedicine & Biotechnology. 2010: 459760. PMID 20037734 DOI: 10.1155/2010/459760 |
0.723 |
|
| 2010 |
Gowen CM, Fong SS. Correction to: Genome-scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum (Biotechnology Journal (2010) 5, (759-767)) Biotechnology Journal. 5: 994. DOI: 10.1002/Biot.201090048 |
0.809 |
|
| 2009 |
Hua Q, Fong S, Palsson B. Phenotypic and metabolic properties of experimentally evolved microbial cells Journal of Bioscience and Bioengineering. 108: S165-S166. DOI: 10.1016/J.Jbiosc.2009.08.449 |
0.534 |
|
| 2008 |
Apte AA, Cain JW, Bonchev DG, Fong SS. Cellular automata simulation of topological effects on the dynamics of feed-forward motifs. Journal of Biological Engineering. 2: 2. PMID 18304325 DOI: 10.1186/1754-1611-2-2 |
0.587 |
|
| 2007 |
Hua Q, Joyce AR, Palsson BØ, Fong SS. Metabolic characterization of Escherichia coli strains adapted to growth on lactate. Applied and Environmental Microbiology. 73: 4639-47. PMID 17513588 DOI: 10.1128/Aem.00527-07 |
0.733 |
|
| 2007 |
Gowen CM, Fong SS. Phenome analysis of microorganisms Bioinformatics: Tools and Applications. 279-292. DOI: 10.1007/978-0-387-92738-1_14 |
0.75 |
|
| 2006 |
Reed JL, Patel TR, Chen KH, Joyce AR, Applebee MK, Herring CD, Bui OT, Knight EM, Fong SS, Palsson BO. Systems approach to refining genome annotation. Proceedings of the National Academy of Sciences of the United States of America. 103: 17480-4. PMID 17088549 DOI: 10.1073/Pnas.0603364103 |
0.774 |
|
| 2006 |
Herrgård MJ, Fong SS, Palsson BØ. Identification of genome-scale metabolic network models using experimentally measured flux profiles. Plos Computational Biology. 2: e72. PMID 16839195 DOI: 10.1371/Journal.Pcbi.0020072 |
0.735 |
|
| 2006 |
Hua Q, Joyce AR, Fong SS, Palsson BØ. Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains. Biotechnology and Bioengineering. 95: 992-1002. PMID 16807925 DOI: 10.1002/Bit.21073 |
0.725 |
|
| 2006 |
Fong SS, Nanchen A, Palsson BO, Sauer U. Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes. The Journal of Biological Chemistry. 281: 8024-33. PMID 16319065 DOI: 10.1074/Jbc.M510016200 |
0.551 |
|
| 2005 |
Fong SS, Joyce AR, Palsson BØ. The econometrics of evolution. Nature Chemical Biology. 1: 191-2. PMID 16408032 DOI: 10.1038/Nchembio0905-191 |
0.675 |
|
| 2005 |
Fong SS, Joyce AR, Palsson BØ. Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Research. 15: 1365-72. PMID 16204189 DOI: 10.1101/Gr.3832305 |
0.675 |
|
| 2005 |
Fong SS, Burgard AP, Herring CD, Knight EM, Blattner FR, Maranas CD, Palsson BO. In silico design and adaptive evolution of Escherichia coli for production of lactic acid Biotechnology and Bioengineering. 91: 643-648. PMID 15962337 DOI: 10.1002/Bit.20542 |
0.507 |
|
| 2004 |
Fong SS, Palsson BØ. Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes. Nature Genetics. 36: 1056-8. PMID 15448692 DOI: 10.1038/Ng1432 |
0.548 |
|
| 2003 |
Fong SS, Marciniak JY, Palsson BØ. Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model. Journal of Bacteriology. 185: 6400-8. PMID 14563875 DOI: 10.1128/Jb.185.21.6400-6408.2003 |
0.545 |
|
| 2002 |
Francis K, Palsson B, Donahue J, Fong S, Carrier E. Murine Sca-1(+)/Lin(-) cells and human KG1a cells exhibit multiple pseudopod morphologies during migration. Experimental Hematology. 30: 460-3. PMID 12031652 DOI: 10.1016/S0301-472X(02)00778-6 |
0.596 |
|
| 2002 |
Lee GM, Fong SS, Oh DJ, Francis K, Palsson BO. Characterization and efficacy of PKH26 as a probe to study the replication history of the human hematopoietic KG1a progenitor cell line. In Vitro Cellular & Developmental Biology. Animal. 38: 90-6. PMID 11929001 DOI: 10.1290/1071-2690(2002)038<0090:Caeopa>2.0.Co;2 |
0.652 |
|
| 2000 |
Lee GM, Fong S, Francis K, Oh DJ, Palsson BO. In situ labeling of adherent cells with PKH26. In Vitro Cellular & Developmental Biology. Animal. 36: 4-6. PMID 10691033 DOI: 10.1290/1071-2690(2000)036<0004:Isloac>2.0.Co;2 |
0.616 |
|
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