Stephen Sailoong Fong, Ph.D. - Publications

Affiliations: 
1998-2004 Bioengineering University of California, San Diego, La Jolla, CA 
Website:
systemsbiology.vcu.edu

120 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Serrano MG, Parikh HI, Brooks JP, Edwards DJ, Arodz TJ, Edupuganti L, Huang B, Girerd PH, Bokhari YA, Bradley SP, Brooks JL, Dickinson MR, Drake JI, Duckworth RA, Fong SS, et al. Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy. Nature Medicine. PMID 31142850 DOI: 10.1038/s41591-019-0465-8  0.6
2019 Fettweis JM, Serrano MG, Brooks JP, Edwards DJ, Girerd PH, Parikh HI, Huang B, Arodz TJ, Edupuganti L, Glascock AL, Xu J, Jimenez NR, Vivadelli SC, Fong SS, Sheth NU, et al. The vaginal microbiome and preterm birth. Nature Medicine. PMID 31142849 DOI: 10.1038/s41591-019-0450-2  0.6
2019 Yan Q, Robert S, Brooks JP, Fong SS. Metabolic characterization of the chitinolytic bacterium Serratia marcescens using a genome-scale metabolic model. Bmc Bioinformatics. 20: 227. PMID 31060515 DOI: 10.1186/s12859-019-2826-1  1
2019 Roell GW, Zha J, Carr RR, Koffas MA, Fong SS, Tang YJ. Engineering microbial consortia by division of labor. Microbial Cell Factories. 18: 35. PMID 30736778 DOI: 10.1186/s12934-019-1083-3  0.36
2018 Yan Q, Fong SS. Increasing carbon source uptake rates to improve chemical productivity in metabolic engineering. Current Opinion in Biotechnology. 53: 254-263. PMID 30301537 DOI: 10.1016/j.copbio.2018.06.001  1
2018 Yan Q, Fong SS. Cloning and characterization of a chitinase from reveals Tfu_0580 as a thermostable and acidic endochitinase. Biotechnology Reports (Amsterdam, Netherlands). 19: e00274. PMID 30094208 DOI: 10.1016/j.btre.2018.e00274  1
2018 Yan Q, Fong SS. Design and modularized optimization of one-step production of N-acetylneuraminic acid from chitin in Serratia marcescens. Biotechnology and Bioengineering. PMID 29959865 DOI: 10.1002/bit.26782  1
2017 Vanee N, Brooks JP, Fong SS. Metabolic Profile of the Cellulolytic Industrial Actinomycete Thermobifida fusca. Metabolites. 7. PMID 29137138 DOI: 10.3390/metabo7040057  0.96
2017 Yan Q, Fong SS. Challenges and Advances for Genetic Engineering of Non-model Bacteria and Uses in Consolidated Bioprocessing. Frontiers in Microbiology. 8: 2060. PMID 29123506 DOI: 10.3389/fmicb.2017.02060  1
2017 Yan Q, Fong SS. Study of in vitro transcriptional binding effects and noise using constitutive promoters combined with UP element sequences in Escherichia coli. Journal of Biological Engineering. 11: 33. PMID 29118850 DOI: 10.1186/s13036-017-0075-2  1
2017 Yan Q, Hong E, Fong SS. Study of ChiR function in Serratia marcescens and its application for improving 2,3-butanediol from crystal chitin. Applied Microbiology and Biotechnology. PMID 28884384 DOI: 10.1007/s00253-017-8488-x  1
2016 Miller IJ, Weyna TR, Fong SS, Lim-Fong GE, Kwan JC. Single sample resolution of rare microbial dark matter in a marine invertebrate metagenome. Scientific Reports. 6: 34362. PMID 27681823 DOI: 10.1038/srep34362  0.32
2016 Miller IJ, Vanee N, Fong SS, Lim-Fong GE, Kwan JC. Lack of overt genome reduction in the bryostatin-producing bryozoan symbiont, "Candidatus Endobugula sertula". Applied and Environmental Microbiology. PMID 27590822 DOI: 10.1128/AEM.01800-16  0.96
2016 Wu G, Yan Q, Jones JA, Tang YJ, Fong SS, Koffas MA. Metabolic Burden: Cornerstones in Synthetic Biology and Metabolic Engineering Applications. Trends in Biotechnology. PMID 26996613 DOI: 10.1016/j.tibtech.2016.02.010  1
2016 Gong X, Si YW, Fong S, Biuk-Aghai RP. Financial time series pattern matching with extended UCR Suite and Support Vector Machine Expert Systems With Applications. 55: 284-296. DOI: 10.1016/j.eswa.2016.02.017  0.52
2016 Fong S, Liu K, Cho K, Wong R, Mohammed S, Fiaidhi J. Improvised methods for tackling big data stream mining challenges: case study of human activity recognition Journal of Supercomputing. 1-33. DOI: 10.1007/s11227-016-1639-5  0.52
2016 Fong S, Cho K, Mohammed O, Fiaidhi J, Mohammed S. A time series pre-processing methodology with statistical and spectral analysis for classifying non-stationary stochastic biosignals Journal of Supercomputing. 1-22. DOI: 10.1007/s11227-016-1635-9  0.52
2016 Brito R, Fong S, Cho K, Song W, Wong R, Mohammed S, Fiaidhi J. GPU-enabled back-propagation artificial neural network for digit recognition in parallel Journal of Supercomputing. 1-19. DOI: 10.1007/s11227-016-1633-y  0.52
2016 Gong X, Fong S, Wong RK, Mohammed S, Fiaidhi J, Vasilakos AV. Discovering sub-patterns from time series using a normalized cross-match algorithm Journal of Supercomputing. 1-18. DOI: 10.1007/s11227-016-1632-z  0.52
2015 Fong SS, Ng SS, Guo X, Wang Y, Chung RC, Stat G, Ki WY, Macfarlane DJ. Deficits in Lower Limb Muscle Reflex Contraction Latency and Peak Force Are Associated With Impairments in Postural Control and Gross Motor Skills of Children With Developmental Coordination Disorder: A Cross-Sectional Study. Medicine. 94: e1785. PMID 26469921 DOI: 10.1097/MD.0000000000001785  0.48
2015 Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, et al. Do genome-scale models need exact solvers or clearer standards? Molecular Systems Biology. 11: 831. PMID 26467284  0.92
2015 Deng Y, Fisher AB, Fong SS. Systematic analysis of intracellular mechanisms of propanol production in the engineered Thermobifida fusca B6 strain. Applied Microbiology and Biotechnology. 99: 8089-100. PMID 26227414 DOI: 10.1007/s00253-015-6850-4  1
2015 Fong SS, Tam YT, Macfarlane DJ, Ng SS, Bae YH, Chan EW, Guo X. Core Muscle Activity during TRX Suspension Exercises with and without Kinesiology Taping in Adults with Chronic Low Back Pain: Implications for Rehabilitation. Evidence-Based Complementary and Alternative Medicine : Ecam. 2015: 910168. PMID 26185520 DOI: 10.1155/2015/910168  0.48
2015 Currie DH, Raman B, Gowen CM, Tschaplinski TJ, Land ML, Brown SD, Covalla SF, Klingeman DM, Yang ZK, Engle NL, Johnson CM, Rodriguez M, Shaw AJ, Kenealy WR, Lynd LR, ... Fong SS, et al. Genome-scale resources for Thermoanaerobacterium saccharolyticum. Bmc Systems Biology. 9: 30. PMID 26111937 DOI: 10.1186/s12918-015-0159-x  1
2015 Lip RW, Fong SS, Ng SS, Liu KP, Guo X. Effects of Ving Tsun Chinese martial art training on musculoskeletal health, balance performance, and self-efficacy in community-dwelling older adults. Journal of Physical Therapy Science. 27: 667-72. PMID 25931704 DOI: 10.1589/jpts.27.667  0.48
2015 Ng MC, Fong S, Siu SW. PSOVina: The hybrid particle swarm optimization algorithm for protein-ligand docking. Journal of Bioinformatics and Computational Biology. 13: 1541007. PMID 25800162 DOI: 10.1142/S0219720015410073  0.52
2015 Fong S, Li J, Gong X, Vasilakos AV. Advances of applying metaheuristics to data mining techniques Improving Knowledge Discovery Through the Integration of Data Mining Techniques. 75-103. DOI: 10.4018/978-1-4666-8513-0.ch005  0.36
2015 Fong S, Han D, Vasilakos AV. Comparative study of incremental learning algorithms in multidimensional outlier detection on data stream Improving Knowledge Discovery Through the Integration of Data Mining Techniques. 54-73. DOI: 10.4018/978-1-4666-8513-0.ch004  0.36
2015 Abid S, Asghar S, Zhuang Y, Fong S. Hidden Markov model based character segmentation factor applied to urdu script Frontiers in Artificial Intelligence and Applications. 275: 39-51. DOI: 10.3233/978-1-61499-503-6-39  0.52
2015 Naseer T, Asghar S, Zhuang Y, Fong S. A comparative analysis of pruning methods for C4.5 and fuzzy C4.5 Frontiers in Artificial Intelligence and Applications. 275: 304-312. DOI: 10.3233/978-1-61499-503-6-304  0.52
2015 Ansari MZH, Asghar S, Zhuang Y, Fong S. A data modification technique in PPDM based on ant colony optimization approach Frontiers in Artificial Intelligence and Applications. 275: 139-149. DOI: 10.3233/978-1-61499-503-6-139  0.52
2015 Fister D, Ljubič K, Fister I, Fong S, Zhuang Y. Online registration system for recreational cycling marathons: Lessons learned Frontiers in Artificial Intelligence and Applications. 275: 120-126. DOI: 10.3233/978-1-61499-503-6-120  0.52
2015 Fong S, Siu SWI, Zhou S, Chan JH, Mohammed S, Fiaidhi J. Real-time analysis of vital signs using incremental data stream mining techniques with a case study of ARDS under ICU treatment Journal of Medical Imaging and Health Informatics. 5: 1108-1115. DOI: 10.1166/jmihi.2015.1504  0.52
2015 Fong S, Liang J, Siu SWI, Chan JH. Efficient variation-based feature selection for medical data classification Journal of Medical Imaging and Health Informatics. 5: 1093-1098. DOI: 10.1166/jmihi.2015.1501  0.52
2015 Fong S, Liang J, Fister I, Mohammed S. Gesture recognition from data streams of human motion sensor using accelerated PSO swarm search feature selection algorithm Journal of Sensors. 2015. DOI: 10.1155/2015/205707  0.52
2015 Fong S, Biuk-Aghai RP, Si YW, Yap BW. A lightweight data preprocessing strategy with fast contradiction analysis for incremental classifier learning Mathematical Problems in Engineering. 2015. DOI: 10.1155/2015/125781  0.52
2015 Fong S, Zhou S, Moutinho L. Text Analytics for Predicting Question Acceptance Rates It Professional. 17: 34-41. DOI: 10.1109/MITP.2015.67  0.52
2015 Fong S, Zhuang Y, Wong R, Mohammed S. A Scalable Data Stream Mining Methodology: Stream-Based Holistic Analytics and Reasoning in Parallel Proceedings - 2014 2nd International Symposium On Computational and Business Intelligence, Iscbi 2014. 110-115. DOI: 10.1109/ISCBI.2014.31  0.52
2015 Fister I, Fong S, Zhuang Y. Data Reconstruction of Abandoned Websites Proceedings - 2014 2nd International Symposium On Computational and Business Intelligence, Iscbi 2014. 67-72. DOI: 10.1109/ISCBI.2014.22  0.52
2015 Yang H, Li P, He Z, Guo X, Fong S, Chen H. A decision support system using combined-classifier for high-speed data stream in smart grid Enterprise Information Systems. DOI: 10.1080/17517575.2015.1086495  0.52
2015 Biuk-Aghai RP, Yang M, Pang PCI, Ao WH, Fong S, Si YW. A map-like visualisation method based on liquid modelling Journal of Visual Languages and Computing. 31: 87-103. DOI: 10.1016/j.jvlc.2015.10.003  0.52
2015 Yang H, Fong S. Countering the concept-drift problems in big data by an incrementally optimized stream mining model Journal of Systems and Software. 102: 158-166. DOI: 10.1016/j.jss.2014.07.010  0.52
2015 Chu VW, Wong RK, Chen F, Fong S, Hung PCK. Self-regularized causal structure discovery for trajectory-based networks Journal of Computer and System Sciences. DOI: 10.1016/j.jcss.2015.10.004  0.52
2015 Fong S, Wang X, Xu Q, Wong R, Fiaidhi J, Mohammed S. Recent advances in metaheuristic algorithms: Does the Makara dragon exist? Journal of Supercomputing. 1-23. DOI: 10.1007/s11227-015-1592-8  0.52
2015 Li J, Fong S, Mohammed S, Fiaidhi J. Improving the classification performance of biological imbalanced datasets by swarm optimization algorithms Journal of Supercomputing. DOI: 10.1007/s11227-015-1541-6  0.52
2015 Gong X, Fong S, Chan JH, Mohammed S. NSPRING: the SPRING extension for subsequence matching of time series supporting normalization Journal of Supercomputing. DOI: 10.1007/s11227-015-1525-6  0.52
2015 Fong S, Deb S, Yang XS. A heuristic optimization method inspired by wolf preying behavior Neural Computing and Applications. 26: 1725-1738. DOI: 10.1007/s00521-015-1836-9  0.52
2015 Li J, Fong S, Zhuang Y, Khoury R. Hierarchical classification in text mining for sentiment analysis of online news Soft Computing. DOI: 10.1007/s00500-015-1812-4  0.52
2015 Fong S, Zhuang Y, Luo H, Liu K, Kim G. Finding significant factors on world ranking of e-governments by feature selection methods over KPIs Communications in Computer and Information Science. 545: 65-73. DOI: 10.1007/978-981-287-936-3_7  0.52
2015 Fong S, Zhuang Y, Liu K, Zhou S. Classifying forum questions using PCA and machine learning for improving online CQA Communications in Computer and Information Science. 545: 13-22. DOI: 10.1007/978-981-287-936-3_2  0.52
2015 Fong S, Luo R, Deb S, Thampi SM. Location-based mutual and mobile information navigation system: Lemmings Advances in Intelligent Systems and Computing. 321: 161-171. DOI: 10.1007/978-3-319-11227-5_15  0.52
2015 Wang Z, Yang Y, Chang S, Li J, Fong S, Huang TS. A joint optimization framework of sparse coding and discriminative clustering Ijcai International Joint Conference On Artificial Intelligence. 2015: 3932-3938.  0.4
2014 Fong SS, Ng SS, Liu KP, Pang MY, Lee HW, Chung JW, Lam PL, Guo X. Musculoskeletal strength, balance performance, and self-efficacy in elderly ving tsun chinese martial art practitioners: implications for fall prevention. Evidence-Based Complementary and Alternative Medicine : Ecam. 2014: 402314. PMID 25530782 DOI: 10.1155/2014/402314  0.48
2014 Fong SS. Computational approaches to metabolic engineering utilizing systems biology and synthetic biology. Computational and Structural Biotechnology Journal. 11: 28-34. PMID 25379141 DOI: 10.1016/j.csbj.2014.08.005  1
2014 Vanee N, Brooks JP, Spicer V, Shamshurin D, Krokhin O, Wilkins JA, Deng Y, Fong SS. Proteomics-based metabolic modeling and characterization of the cellulolytic bacterium Thermobifida fusca. Bmc Systems Biology. 8: 86. PMID 25115351 DOI: 10.1186/s12918-014-0086-2  1
2014 Koon CM, Fong S, Wat E, Wang YP, Wing-Shing Cheung D, Bik-San Lau C, Leung PC, Sun HD, Zhao QS, Fung KP. Mechanisms of the dilator action of the Erigerontis Herba on rat aorta. Journal of Ethnopharmacology. 155: 1561-7. PMID 25102247 DOI: 10.1016/j.jep.2014.07.053  0.32
2014 Apte AA, Senger RS, Fong SS. Designing novel cellulase systems through agent-based modeling and global sensitivity analysis. Bioengineered. 5: 243-53. PMID 24830736 DOI: 10.4161/bioe.29160  1
2014 Iwai S, Huang D, Fong S, Jarlsberg LG, Worodria W, Yoo S, Cattamanchi A, Davis JL, Kaswabuli S, Segal M, Huang L, Lynch SV. The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients. Plos One. 9: e95726. PMID 24752365 DOI: 10.1371/journal.pone.0095726  0.4
2014 Parobek CM, Jiang LY, Patel JC, Alvarez-Martínez MJ, Miro JM, Worodria W, Andama A, Fong S, Huang L, Meshnick SR, Taylor SM, Juliano JJ. Multilocus microsatellite genotyping array for investigation of genetic epidemiology of Pneumocystis jirovecii. Journal of Clinical Microbiology. 52: 1391-9. PMID 24523468 DOI: 10.1128/JCM.02531-13  0.4
2014 Nabi S, Rehman SU, Fong S, Aziz K. A model for implementing security at application level in service oriented architecture Journal of Emerging Technologies in Web Intelligence. 6: 157-163. DOI: 10.4304/jetwi.6.1.157-163  0.52
2014 Khan K, Bhutto SZA, Rehman SU, Aziz K, Fong S. A comprehensive study of finding copy-and-paste clones from program source codes Journal of Emerging Technologies in Web Intelligence. 6: 111-118. DOI: 10.4304/jetwi.6.1.111-118  0.52
2014 Fong S, Mohammed O, Fiaidhi J, Mohammed S, Kwoh CK. Measuring similarity by prediction class between biomedical datasets via fuzzy unordered rule induction International Journal of Bio-Science and Bio-Technology. 6: 159-168. DOI: 10.14257/ijbsbt.2014.6.2.16  0.52
2014 Yang XS, Deb S, Fong S. Metaheuristic algorithms: Optimal balance of intensification and diversification Applied Mathematics and Information Sciences. 8: 977-983. DOI: 10.12785/amis/080306  0.52
2014 Rehman SU, Asghar S, Zhuang Y, Fong S. Performance Evaluation of Frequent Subgraph Discovery Techniques Mathematical Problems in Engineering. 2014. DOI: 10.1155/2014/869198  0.52
2014 Fong S, Deb S, Wong R, Sun G. Underwater sonar signals recognition by incremental data stream mining with conflict analysis International Journal of Distributed Sensor Networks. 2014. DOI: 10.1155/2014/635834  0.52
2014 Yang H, Fong S, Zhuang Y. Mediating dynamic supply chain formation by collaborative single machine earliness/tardiness agents in supply mesh Mathematical Problems in Engineering. 2014. DOI: 10.1155/2014/535890  0.52
2014 Deb S, Fong S, Hanne T. Message from the general chairs Proceedings - 2014 International Conference On Soft Computing and Machine Intelligence, Iscmi 2014. viii-ix. DOI: 10.1109/ISCMI.2014.4  0.44
2014 Fister I, Fister D, Ljubič K, Zhuang Y, Fong S. Towards automatic food prediction during endurance sport competitions Proceedings - 2014 International Conference On Soft Computing and Machine Intelligence, Iscmi 2014. 6-10. DOI: 10.1109/ISCMI.2014.30  0.52
2014 Deb S, Jia C, Fong S. On-road directional trajectory prediction by junction-based pattern mining from GPS data Proceedings - 2013 International Conference On Machine Intelligence Research and Advancement, Icmira 2013. 253-257. DOI: 10.1109/ICMIRA.2013.54  0.52
2014 Fister I, Yang XS, Fong S, Zhuang Y. Bat algorithm: Recent advances Cinti 2014 - 15th Ieee International Symposium On Computational Intelligence and Informatics, Proceedings. 163-167. DOI: 10.1109/CINTI.2014.7028669  0.52
2014 Fong S, Deb S, Chaudhary A. A review of metaheuristics in robotics Computers and Electrical Engineering. DOI: 10.1016/j.compeleceng.2015.01.009  0.52
2014 Senger RS, Yen JY, Fong SS. A review of genome-scale metabolic flux modeling of anaerobiosis in biotechnology Current Opinion in Chemical Engineering. 6: 33-42. DOI: 10.1016/j.coche.2014.08.003  0.64
2014 Merklein K, Fong SS, Deng Y. Production of butyric acid by a cellulolytic actinobacterium Thermobifida fusca on cellulose Biochemical Engineering Journal. 90: 239-244. DOI: 10.1016/j.bej.2014.06.012  1
2014 Yap BW, Rani KA, Abd Rahman HA, Fong S, Khairudin Z, Abdullah NN. An application of oversampling, undersampling, bagging and boosting in handling imbalanced datasets Lecture Notes in Electrical Engineering. 285: 13-22. DOI: 10.1007/978-981-4585-18-7-2  0.52
2014 Yang XS, Deb S, Fong S. Bat algorithm is better than intermittent search strategy Journal of Multiple-Valued Logic and Soft Computing. 22: 223-237.  0.52
2014 Deb S, Fong S, Thampi SM. Framework of lightweight secure media transfer for mobile law enforcement apps Communications in Computer and Information Science. 467: 211-220.  0.52
2013 Fisher AB, Canfield ZB, Hayward LC, Fong SS, McArthur GH. Ex vivo DNA Assembly. Frontiers in Bioengineering and Biotechnology. 1: 12. PMID 25024067 DOI: 10.3389/fbioe.2013.00012  0.96
2013 Seref O, Brooks JP, Fong SS. Decomposition of flux distributions into metabolic pathways. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 984-93. PMID 24334391 DOI: 10.1109/TCBB.2013.115  1
2013 Seref O, Brooks JP, Fong SS. Decomposition of Flux Distributions into Metabolic Pathways. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 24062542  0.6
2013 Fong SS, Ng SS, Yiu BP. Slowed muscle force production and sensory organization deficits contribute to altered postural control strategies in children with developmental coordination disorder. Research in Developmental Disabilities. 34: 3040-8. PMID 23831475 DOI: 10.1016/j.ridd.2013.05.035  0.32
2013 Gowen CM, Fong SS. Linking RNA measurements and proteomics with genome-scale models. Methods in Molecular Biology (Clifton, N.J.). 985: 429-45. PMID 23417816 DOI: 10.1007/978-1-62703-299-5_21  1
2012 Vanee N, Fisher AB, Fong SS. Evolutionary engineering for industrial microbiology. Sub-Cellular Biochemistry. 64: 43-71. PMID 23080245 DOI: 10.1007/978-94-007-5055-5_3  0.96
2012 Brooks JP, Burns WP, Fong SS, Gowen CM, Roberts SB. Gap detection for genome-scale constraint-based models. Advances in Bioinformatics. 2012: 323472. PMID 22997515 DOI: 10.1155/2012/323472  1
2012 Tsang WW, Guo X, Fong SS, Mak KK, Pang MY. Activity participation intensity is associated with skeletal development in pre-pubertal children with developmental coordination disorder. Research in Developmental Disabilities. 33: 1898-904. PMID 22728602 DOI: 10.1016/j.ridd.2012.05.015  0.48
2012 Vanee N, Roberts SB, Riggs MJ, Rao RR, Fong SS. Identification of metabolic changes in genetically unstable stem cells by using model analysis of gene expression. Chemistry & Biodiversity. 9: 911-29. PMID 22589092 DOI: 10.1002/cbdv.201100390  1
2011 Deng Y, Fong SS. Laboratory evolution and multi-platform genome re-sequencing of the cellulolytic actinobacterium Thermobifida fusca. The Journal of Biological Chemistry. 286: 39958-66. PMID 21914801 DOI: 10.1074/jbc.M111.239616  1
2011 Gowen CM, Fong SS. Applications of systems biology towards microbial fuel production. Trends in Microbiology. 19: 516-24. PMID 21871807 DOI: 10.1016/j.tim.2011.07.005  1
2011 Deng Y, Fong SS. Metabolic engineering of Thermobifida fusca for direct aerobic bioconversion of untreated lignocellulosic biomass to 1-propanol. Metabolic Engineering. 13: 570-7. PMID 21757023 DOI: 10.1016/j.ymben.2011.06.007  1
2011 Anesiadis N, Cluett WR, Kobayashi H, Fong S, Mahadevan R. Dynamic metabolic engineering for lactate production Aiche Annual Meeting, Conference Proceedings 1
2011 Apte A, Senger RS, Fong SS. Designing novel cellulase systems through agent based modeling and global sensitivity analysis 11aiche - 2011 Aiche Annual Meeting, Conference Proceedings 1
2010 Bower AG, McClintock MK, Fong SS. Synthetic biology: a foundation for multi-scale molecular biology. Bioengineered Bugs. 1: 309-12. PMID 21326830 DOI: 10.4161/bbug.1.5.12391  1
2010 Gowen CM, Fong SS. Genome-scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum. Biotechnology Journal. 5: 759-67. PMID 20665646 DOI: 10.1002/biot.201000084  1
2010 Apte A, Bonchev D, Fong S. Cellular automata modeling of FASL-initiated apoptosis. Chemistry & Biodiversity. 7: 1163-72. PMID 20491073 DOI: 10.1002/cbdv.200900422  1
2010 Gowen CM, Fong SS. Exploring biodiversity for cellulosic biofuel production. Chemistry & Biodiversity. 7: 1086-97. PMID 20491068 DOI: 10.1002/cbdv.200900314  1
2010 Vanee N, Roberts SB, Fong SS, Manque P, Buck GA. A genome-scale metabolic model of Cryptosporidium hominis. Chemistry & Biodiversity. 7: 1026-39. PMID 20491062 DOI: 10.1002/cbdv.200900323  1
2010 Roberts SB, Gowen CM, Brooks JP, Fong SS. Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production. Bmc Systems Biology. 4: 31. PMID 20307315 DOI: 10.1186/1752-0509-4-31  1
2010 Deng Y, Fong SS. Development and application of a PCR-targeted gene disruption method for studying CelR function in Thermobifida fusca. Applied and Environmental Microbiology. 76: 2098-106. PMID 20097808 DOI: 10.1128/AEM.02626-09  1
2010 McArthur GH, Fong SS. Toward engineering synthetic microbial metabolism. Journal of Biomedicine & Biotechnology. 2010: 459760. PMID 20037734 DOI: 10.1155/2010/459760  1
2010 Deng Y, Fong SS. Influence of culture aeration on the cellulase activity of Thermobifida fusca. Applied Microbiology and Biotechnology. 85: 965-74. PMID 19697023 DOI: 10.1007/s00253-009-2155-9  1
2010 Gowen CM, Fong SS. Correction to: Genome-scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum (Biotechnology Journal (2010) 5, (759-767)) Biotechnology Journal. 5: 994. DOI: 10.1002/biot.201090048  1
2008 Apte AA, Cain JW, Bonchev DG, Fong SS. Cellular automata simulation of topological effects on the dynamics of feed-forward motifs. Journal of Biological Engineering. 2: 2. PMID 18304325 DOI: 10.1186/1754-1611-2-2  1
2007 Hua Q, Joyce AR, Palsson BØ, Fong SS. Metabolic characterization of Escherichia coli strains adapted to growth on lactate. Applied and Environmental Microbiology. 73: 4639-47. PMID 17513588 DOI: 10.1128/AEM.00527-07  1
2007 Fong SS. Genome-scale assessment of phenotypic changes during adaptive evolution Introduction to Systems Biology. 183-195. DOI: 10.1007/978-1-59745-531-2_10  1
2007 Gowen CM, Fong SS. Phenome analysis of microorganisms Bioinformatics: Tools and Applications. 279-292. DOI: 10.1007/978-0-387-92738-1_14  1
2006 Reed JL, Patel TR, Chen KH, Joyce AR, Applebee MK, Herring CD, Bui OT, Knight EM, Fong SS, Palsson BO. Systems approach to refining genome annotation. Proceedings of the National Academy of Sciences of the United States of America. 103: 17480-4. PMID 17088549 DOI: 10.1073/pnas.0603364103  1
2006 Herrgård MJ, Fong SS, Palsson BØ. Identification of genome-scale metabolic network models using experimentally measured flux profiles. Plos Computational Biology. 2: e72. PMID 16839195 DOI: 10.1371/journal.pcbi.0020072  1
2006 Hua Q, Joyce AR, Fong SS, Palsson BØ. Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains. Biotechnology and Bioengineering. 95: 992-1002. PMID 16807925 DOI: 10.1002/bit.21073  1
2006 Yam WK, Chan HS, Tsui KW, Yiu BP, Fong SS, Cheng CY, Chan CW. Prevalence study of cerebral palsy in Hong Kong children. Hong Kong Medical Journal = Xianggang Yi Xue Za Zhi / Hong Kong Academy of Medicine. 12: 180-4. PMID 16760544  0.32
2006 Fong SS, Nanchen A, Palsson BO, Sauer U. Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes. The Journal of Biological Chemistry. 281: 8024-33. PMID 16319065 DOI: 10.1074/jbc.M510016200  1
2005 Fong SS, Joyce AR, Palsson BØ. The econometrics of evolution. Nature Chemical Biology. 1: 191-2. PMID 16408032 DOI: 10.1038/nchembio0905-191  1
2005 Fong SS, Joyce AR, Palsson BØ. Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Research. 15: 1365-72. PMID 16204189 DOI: 10.1101/gr.3832305  1
2005 Fong SS, Burgard AP, Herring CD, Knight EM, Blattner FR, Maranas CD, Palsson BO. In silico design and adaptive evolution of Escherichia coli for production of lactic acid Biotechnology and Bioengineering. 91: 643-648. PMID 15962337 DOI: 10.1002/bit.20542  1
2005 Fong SS, Burgard A, Maranas CD, Palsson BO. Metabolic engineering of escherichia coli through in silico design and experimental evolution Aiche Annual Meeting, Conference Proceedings. 9167.  1
2004 Fong SS, Palsson BØ. Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes. Nature Genetics. 36: 1056-8. PMID 15448692 DOI: 10.1038/ng1432  1
2003 Fong SS, Marciniak JY, Palsson BØ. Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model. Journal of Bacteriology. 185: 6400-8. PMID 14563875 DOI: 10.1128/JB.185.21.6400-6408.2003  1
2002 Francis K, Palsson B, Donahue J, Fong S, Carrier E. Murine Sca-1(+)/Lin(-) cells and human KG1a cells exhibit multiple pseudopod morphologies during migration. Experimental Hematology. 30: 460-3. PMID 12031652 DOI: 10.1016/S0301-472X(02)00778-6  1
2002 Lee GM, Fong SS, Oh DJ, Francis K, Palsson BO. Characterization and efficacy of PKH26 as a probe to study the replication history of the human hematopoietic KG1a progenitor cell line. In Vitro Cellular & Developmental Biology. Animal. 38: 90-6. PMID 11929001 DOI: 10.1290/1071-2690(2002)038<0090:CAEOPA>2.0.CO;2  1
2002 Fong SS, Palsson BO. Adaptive evolution of Escherichia coli towards a predicted phenotype Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 3: 2215-2216.  1
2000 Lee GM, Fong S, Francis K, Oh DJ, Palsson BO. In situ labeling of adherent cells with PKH26. In Vitro Cellular & Developmental Biology. Animal. 36: 4-6. PMID 10691033 DOI: 10.1290/1071-2690(2000)036<0004:ISLOAC>2.0.CO;2  1
1984 Fong S, Friedkin M. Cystamine augments the stimulation of DNA synthesis by peptide growth factors and microtubule-disrupting agents in cultures of 3T3 mouse fibroblasts Journal of Cellular Physiology. 120: 303-308. PMID 6378930  1
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