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Roger Larken Chang - Publications

Affiliations: 
2012 Bioinformatics University of California, San Diego, La Jolla, CA 
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Ng TL, Olson EJ, Yoo TY, Weiss HS, Koide Y, Koch PD, Rollins NJ, Mach P, Meisinger T, Bricken T, Chang TZ, Molloy C, Zürcher J, Chang RL, Mitchison TJ, et al. High-Content Screening and Computational Prediction Reveal Viral Genes That Suppress the Innate Immune Response. Msystems. e0146621. PMID 35319251 DOI: 10.1128/msystems.01466-21  0.438
2022 Veling MT, Nguyen DT, Thadani NN, Oster ME, Rollins NJ, Brock KP, Bethel NP, Lim S, Baker D, Way JC, Marks DS, Chang RL, Silver PA. Natural and Designed Proteins Inspired by Extremotolerant Organisms Can Form Condensates and Attenuate Apoptosis in Human Cells. Acs Synthetic Biology. PMID 35176859 DOI: 10.1021/acssynbio.1c00572  0.398
2018 Brunk E, Chang RL, Xia J, Hefzi H, Yurkovich JT, Kim D, Buckmiller E, Wang HH, Cho BK, Yang C, Palsson BO, Church GM, Lewis NE. Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow. Proceedings of the National Academy of Sciences of the United States of America. PMID 30301795 DOI: 10.1073/Pnas.1811971115  0.759
2016 Chaiboonchoe A, Ghamsari L, Dohai B, Ng P, Khraiwesh B, Jaiswal A, Jijakli K, Koussa J, Nelson DR, Cai H, Yang X, Chang RL, Papin J, Yu H, Balaji S, et al. Systems level analysis of the Chlamydomonas reinhardtii metabolic network reveals variability in evolutionary co-conservation. Molecular Biosystems. PMID 27357594 DOI: 10.1039/C6Mb00237D  0.639
2016 Brunk E, Mih N, Monk J, Zhang Z, O'Brien EJ, Bliven SE, Chen K, Chang RL, Bourne PE, Palsson BO. Systems biology of the structural proteome. Bmc Systems Biology. 10: 26. PMID 26969117 DOI: 10.1186/S12918-016-0271-6  0.709
2016 MacKellar D, Lieber L, Norman JS, Bolger A, Tobin C, Murray JW, Oksaksin M, Chang RL, Ford TJ, Nguyen PQ, Woodward J, Permingeat HR, Joshi NS, Silver PA, Usadel B, et al. Streptomyces thermoautotrophicus does not fix nitrogen. Scientific Reports. 6: 20086. PMID 26833023 DOI: 10.1038/Srep20086  0.482
2015 Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, et al. Do genome-scale models need exact solvers or clearer standards? Molecular Systems Biology. 11: 831. PMID 26467284 DOI: 10.15252/Msb.20156157  0.526
2015 Chen AH, Lubkowicz D, Yeong V, Chang RL, Silver PA. Transplantability of a circadian clock to a noncircadian organism. Science Advances. 1. PMID 26229984 DOI: 10.1126/Sciadv.1500358  0.488
2013 Chang RL, Xie L, Bourne PE, Palsson BO. Antibacterial mechanisms identified through structural systems pharmacology. Bmc Systems Biology. 7: 102. PMID 24112686 DOI: 10.1186/1752-0509-7-102  0.623
2013 O'Brien EJ, Lerman JA, Chang RL, Hyduke DR, Palsson BØ. Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction. Molecular Systems Biology. 9: 693. PMID 24084808 DOI: 10.1038/Msb.2013.52  0.765
2013 Chang RL, Andrews K, Kim D, Li Z, Godzik A, Palsson BO. Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli. Science (New York, N.Y.). 340: 1220-3. PMID 23744946 DOI: 10.1126/Science.1234012  0.736
2012 Nam H, Lewis NE, Lerman JA, Lee DH, Chang RL, Kim D, Palsson BO. Network context and selection in the evolution to enzyme specificity. Science (New York, N.Y.). 337: 1101-4. PMID 22936779 DOI: 10.1126/Science.1216861  0.752
2011 Chang RL, Ghamsari L, Manichaikul A, Hom EF, Balaji S, Fu W, Shen Y, Hao T, Palsson BØ, Salehi-Ashtiani K, Papin JA. Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism. Molecular Systems Biology. 7: 518. PMID 21811229 DOI: 10.1038/Msb.2011.52  0.712
2010 Chang RL, Xie L, Xie L, Bourne PE, Palsson BØ. Drug off-target effects predicted using structural analysis in the context of a metabolic network model. Plos Computational Biology. 6: e1000938. PMID 20957118 DOI: 10.1371/Journal.Pcbi.1000938  0.625
2010 Chang RL, Luo F, Johnson S, Scheuermann RH. Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks. International Journal of Bioinformatics Research and Applications. 6: 101-19. PMID 20223734 DOI: 10.1504/Ijbra.2010.032115  0.54
2009 Manichaikul A, Ghamsari L, Hom EF, Lin C, Murray RR, Chang RL, Balaji S, Hao T, Shen Y, Chavali AK, Thiele I, Yang X, Fan C, Mello E, Hill DE, et al. Metabolic network analysis integrated with transcript verification for sequenced genomes. Nature Methods. 6: 589-92. PMID 19597503 DOI: 10.1038/Nmeth.1348  0.745
2008 Squires B, Macken C, Garcia-Sastre A, Godbole S, Noronha J, Hunt V, Chang R, Larsen CN, Klem E, Biersack K, Scheuermann RH. BioHealthBase: informatics support in the elucidation of influenza virus host pathogen interactions and virulence. Nucleic Acids Research. 36: D497-503. PMID 17965094 DOI: 10.1093/Nar/Gkm905  0.549
2007 Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH. Modular organization of protein interaction networks. Bioinformatics (Oxford, England). 23: 207-14. PMID 17092991 DOI: 10.1093/Bioinformatics/Btl562  0.555
2007 Luo F, Yang Y, Chen C, Chang R, Zhou J, Scheuermann RH. Modular organization of protein interaction networks Bioinformatics. 23: 916-916. DOI: 10.1093/bioinformatics/btm037  0.498
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