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Christopher Bystroff - Publications

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http://www.bioinfo.rpi.edu/~bystrc/
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27/87 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, ... ... Bystroff C, et al. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods. PMID 32483333 DOI: 10.1038/S41592-020-0848-2  0.634
2020 Koehler Leman J, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, et al. Better together: Elements of successful scientific software development in a distributed collaborative community. Plos Computational Biology. 16: e1007507. PMID 32365137 DOI: 10.1371/Journal.Pcbi.1007507  0.749
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Members of the RosettaCommons Consortium. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S009  0.71
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Details of Remaining Collective Challenges. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S008  0.716
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Commercial spin-off companies from the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S007  0.723
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Values Statement: Equality and Inclusion in the RosettaCommons. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S005  0.697
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Descriptions of the Rosetta board positions. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S004  0.708
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Typical development workflow in the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S003  0.743
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Specific tests for Rosetta running on our automated testing framework. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S002  0.712
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Growth in Rosetta PIs and conference attendees. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S001  0.7
2015 Shirke AN, Basore D, Butterfoss GL, Bonneau R, Bystroff C, Gross RA. Towards rational thermostabilization of Aspergillus oryzae Cutinase: Insights into catalytic and structural stability. Proteins. PMID 26522152 DOI: 10.1002/Prot.24955  0.492
2015 Schenkelberg CD, Bystroff C. InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite. Bioinformatics (Oxford, England). PMID 26315900 DOI: 10.1093/Bioinformatics/Btv492  0.331
2013 Xia Y, DiPrimio N, Keppel TR, Vo B, Fraser K, Battaile KP, Egan C, Bystroff C, Lovell S, Weis DD, Anderson JC, Karanicolas J. The designability of protein switches by chemical rescue of structure: mechanisms of inactivation and reactivation. Journal of the American Chemical Society. 135: 18840-9. PMID 24313858 DOI: 10.1021/Ja407644B  0.602
2006 Huang YM, Bystroff C. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions. Bioinformatics (Oxford, England). 22: 413-22. PMID 16352653 DOI: 10.1093/Bioinformatics/Bti828  0.3
2004 Bystroff C, Shao Y, Yuan X. Five hierarchical levels of sequence-structure correlation in proteins. Applied Bioinformatics. 3: 97-104. PMID 15693735 DOI: 10.2165/00822942-200403020-00004  0.313
2003 Yuan X, Shao Y, Bystroff C. Ab initio protein structure prediction using pathway models. Comparative and Functional Genomics. 4: 397-401. PMID 18629080 DOI: 10.1002/Cfg.305  0.307
2000 Bystroff C, Thorsson V, Baker D. HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins. Journal of Molecular Biology. 301: 173-90. PMID 10926500 DOI: 10.1006/Jmbi.2000.3837  0.668
2000 Thayer EC, Bystroff C, Baker D. Detection of protein coding sequences using a mixture model for local protein amino acid sequence. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 7: 317-27. PMID 10890405 DOI: 10.1089/10665270050081559  0.361
1999 Simons KT, Ruczinski I, Kooperberg C, Fox BA, Bystroff C, Baker D. Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. Proteins. 34: 82-95. PMID 10336385 DOI: 10.1002/(Sici)1097-0134(19990101)34:1<82::Aid-Prot7>3.0.Co;2-A  0.374
1998 Yi Q, Bystroff C, Rajagopal P, Klevit RE, Baker D. Prediction and structural characterization of an independently folding substructure in the src SH3 domain. Journal of Molecular Biology. 283: 293-300. PMID 9761691 DOI: 10.1006/Jmbi.1998.2072  0.357
1998 Bystroff C, Baker D. Prediction of local structure in proteins using a library of sequence-structure motifs. Journal of Molecular Biology. 281: 565-77. PMID 9698570 DOI: 10.1006/Jmbi.1998.1943  0.386
1997 Bystroff C, Baker D. Blind predictions of local protein structure in CASP2 targets using the I-sites library. Proteins. 167-71. PMID 9485508 DOI: 10.1002/(Sici)1097-0134(1997)1+<167::Aid-Prot21>3.0.Co;2-L  0.389
1997 Han KF, Bystroff C, Baker D. Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns. Protein Science : a Publication of the Protein Society. 6: 1587-90. PMID 9232660 DOI: 10.1002/Pro.5560060723  0.357
1996 Bystroff C, Simons KT, Han KF, Baker D. Local sequence-structure correlations in proteins. Current Opinion in Biotechnology. 7: 417-21. PMID 8768900 DOI: 10.1016/S0958-1669(96)80117-0  0.369
1993 Bystroff C, Baker D, Fletterick RJ, Agard DA. PRISM: application to the solution of two protein structures. Acta Crystallographica. Section D, Biological Crystallography. 49: 440-8. PMID 15299503 DOI: 10.1107/S0907444993004020  0.527
1993 Baker D, Bystroff C, Fletterick RJ, Agard DA. PRISM: topologically constrained phased refinement for macromolecular crystallography. Acta Crystallographica. Section D, Biological Crystallography. 49: 429-39. PMID 15299502 DOI: 10.1107/S0907444993004032  0.525
1993 Baker D, Bystroff C, Krukowski A, Wilson C, Agard D. Connectivity and the phase problem in macromolecular crystallography Acta Crystallographica Section a Foundations of Crystallography. 49: c50-c50. DOI: 10.1107/S0108767378098566  0.423
Low-probability matches (unlikely to be authored by this person)
2008 Bystroff C, Webb-Robertson BJ. Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure. Bmc Bioinformatics. 9: 429. PMID 18847485 DOI: 10.1186/1471-2105-9-429  0.3
2016 Schenkelberg CD, Bystroff C. Protein backbone ensemble generation explores the local structural space of unseen natural homologs. Bioinformatics (Oxford, England). PMID 26787668 DOI: 10.1093/Bioinformatics/Btw001  0.299
2008 Bystroff C, Krogh A. Hidden Markov Models for prediction of protein features. Methods in Molecular Biology (Clifton, N.J.). 413: 173-98. PMID 18075166 DOI: 10.1007/978-1-59745-574-9_7  0.293
2009 Salem S, Zaki MJ, Bystroff C. Iterative non-sequential protein structural alignment. Journal of Bioinformatics and Computational Biology. 7: 571-96. PMID 19507290 DOI: 10.1142/S0219720009004205  0.286
2014 Pitman DJ, Schenkelberg CD, Huang YM, Teets FD, Ditursi D, Bystroff C. Improving computational efficiency and tractability of protein design using a piecemeal approach. A strategy for parallel and distributed protein design. Bioinformatics (Oxford, England). PMID 24371152 DOI: 10.1093/Bioinformatics/Btt735  0.279
2005 Yuan X, Bystroff C. Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins. Bioinformatics (Oxford, England). 21: 1010-9. PMID 15531601 DOI: 10.1093/Bioinformatics/Bti128  0.278
2003 Shao Y, Bystroff C. Predicting interresidue contacts using templates and pathways. Proteins. 53: 497-502. PMID 14579339 DOI: 10.1002/Prot.10539  0.278
2018 Hooper WF, Walcott BD, Wang X, Bystroff C. Fast design of arbitrary length loops in proteins using InteractiveRosetta. Bmc Bioinformatics. 19: 337. PMID 30249181 DOI: 10.1186/S12859-018-2345-5  0.276
2003 Hou Y, Hsu W, Lee ML, Bystroff C. Efficient remote homology detection using local structure. Bioinformatics (Oxford, England). 19: 2294-301. PMID 14630658 DOI: 10.1093/Bioinformatics/Btg317  0.275
2008 Zaki MJ, Bystroff C. Protein structure prediction. Preface. Methods in Molecular Biology (Clifton, N.J.). 413: v-vii. PMID 18453069 DOI: 10.1007/978-1-59745-574-9  0.271
2010 Salem S, Zaki MJ, Bystroff C. FlexSnap: flexible non-sequential protein structure alignment. Algorithms For Molecular Biology : Amb. 5: 12. PMID 20047669 DOI: 10.1186/1748-7188-5-12  0.264
2010 Reeder PJ, Huang YM, Dordick JS, Bystroff C. A rewired green fluorescent protein: folding and function in a nonsequential, noncircular GFP permutant. Biochemistry. 49: 10773-9. PMID 21090791 DOI: 10.1021/Bi100975Z  0.258
2003 Bystroff C, Garde S. Helix propensities of short peptides: molecular dynamics versus bioinformatics. Proteins. 50: 552-62. PMID 12577261 DOI: 10.1002/Prot.10252  0.257
2007 Xia K, Manning M, Hesham H, Lin Q, Bystroff C, Colón W. Identifying the subproteome of kinetically stable proteins via diagonal 2D SDS/PAGE. Proceedings of the National Academy of Sciences of the United States of America. 104: 17329-34. PMID 17956990 DOI: 10.1073/Pnas.0705417104  0.257
2013 Huang YM, Bystroff C. Expanded explorations into the optimization of an energy function for protein design. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 1176-87. PMID 24384706 DOI: 10.1109/Tcbb.2013.113  0.255
2009 Buck PM, Bystroff C. Simulating protein folding initiation sites using an alpha-carbon-only knowledge-based force field. Proteins. 76: 331-42. PMID 19137613 DOI: 10.1002/Prot.22348  0.255
2004 Hou Y, Hsu W, Lee ML, Bystroff C. Remote homolog detection using local sequence-structure correlations. Proteins. 57: 518-30. PMID 15382242 DOI: 10.1002/Prot.20221  0.252
1994 McGrath ME, Erpel T, Bystroff C, Fletterick RJ. Macromolecular chelation as an improved mechanism of protease inhibition: structure of the ecotin-trypsin complex. The Embo Journal. 13: 1502-7. PMID 8156987 DOI: 10.1002/J.1460-2075.1994.Tb06411.X  0.252
2008 Shentu Z, Al Hasan M, Bystroff C, Zaki MJ. Context shapes: Efficient complementary shape matching for protein-protein docking. Proteins. 70: 1056-73. PMID 17847098 DOI: 10.1002/Prot.21600  0.252
2013 Shong J, Huang YM, Bystroff C, Collins CH. Directed evolution of the quorum-sensing regulator EsaR for increased signal sensitivity. Acs Chemical Biology. 8: 789-95. PMID 23363022 DOI: 10.1021/Cb3006402  0.251
2015 Fraser K, Schenkelberg C, Banerjee S, Thornton C, Lamberson C, Jones V, Choi A, Altshuler R, Dordick JS, Bystroff C. Developing Leave One Out GFP Based Biosensors Biophysical Journal. 108: 328a. DOI: 10.1016/J.Bpj.2014.11.1785  0.251
1992 Goddette DW, Paech C, Yang SS, Mielenz JR, Bystroff C, Wilke ME, Fletterick RJ. The crystal structure of the Bacillus lentus alkaline protease, subtilisin BL, at 1.4 A resolution. Journal of Molecular Biology. 228: 580-95. PMID 1453465 DOI: 10.1016/0022-2836(92)90843-9  0.248
2012 Ramakrishnan V, Srinivasan SP, Salem SM, Matthews SJ, Colón W, Zaki M, Bystroff C. Geofold: topology-based protein unfolding pathways capture the effects of engineered disulfides on kinetic stability. Proteins. 80: 920-34. PMID 22189917 DOI: 10.1002/Prot.23249  0.246
2009 Bystroff C. Protein Structure, Stability, and Interactions Protein Structure, Stability, and Interactions . Edited by John W. Shriver (University of Alabama, Huntsville). From the series, Methods in Molecular Biology, 490. Edited by John M. Walker (University of Hertsfordshire, U.K.). Humana Press (a part of Springer Science + Business Media): New York. 2009. x + 360 pp. $109. ISBN 978-1-58829-954-3 . Journal of the American Chemical Society. 131: 8334-8335. DOI: 10.1021/Ja9036498  0.246
2015 Huang YM, Banerjee S, Crone DE, Schenkelberg CD, Pitman DJ, Buck PM, Bystroff C. Towards computationally designed self-reporting biosensors using leave-one-out green fluorescent protein. Biochemistry. PMID 26397806 DOI: 10.1021/Acs.Biochem.5B00786  0.24
2011 Buck PM, Bystroff C. Constraining local structure can speed up folding by promoting structural polarization of the folding pathway. Protein Science : a Publication of the Protein Society. 20: 959-69. PMID 21413096 DOI: 10.1002/Pro.619  0.239
2018 Bystroff C. Intramembranal disulfide cross-linking elucidates the super-quaternary structure of mammalian CatSpers. Reproductive Biology. PMID 29371110 DOI: 10.1016/J.Repbio.2018.01.005  0.238
2015 Pitman DJ, Banerjee S, Macari SJ, Castaldi CA, Crone DE, Bystroff C. Exploring the folding pathway of green fluorescent protein through disulfide engineering. Protein Science : a Publication of the Protein Society. 24: 341-53. PMID 25516354 DOI: 10.1002/Pro.2621  0.236
2019 Banerjee S, Jordan TB, Fraser K, Reimertz J, Crone EE, Bunn AL, Mincer J, Booth RM, Crone DE, Bondos SE, Bystroff C. Computationally Guided Rational Design of LOO-GFP Biosensors and Biosensor Materials Biophysical Journal. 116: 443a. DOI: 10.1016/J.Bpj.2018.11.2385  0.231
1990 Bystroff C, Oatley SJ, Kraut J. Crystal structures of Escherichia coli dihydrofolate reductase: the NADP+ holoenzyme and the folate.NADP+ ternary complex. Substrate binding and a model for the transition state. Biochemistry. 29: 3263-77. PMID 2185835 DOI: 10.1021/Bi00465A018  0.227
2009 Huang YM, Bystroff C. Complementation and reconstitution of fluorescence from circularly permuted and truncated green fluorescent protein. Biochemistry. 48: 929-40. PMID 19140681 DOI: 10.1021/Bi802027G  0.227
2014 Rosenman DJ, Huang YM, Xia K, Fraser K, Jones VE, Lamberson CM, Van Roey P, Colón W, Bystroff C. Green-lighting green fluorescent protein: faster and more efficient folding by eliminating a cis-trans peptide isomerization event. Protein Science : a Publication of the Protein Society. 23: 400-10. PMID 24408076 DOI: 10.1002/Pro.2421  0.227
2008 Shinde AV, Bystroff C, Wang C, Vogelezang MG, Vincent PA, Hynes RO, Van De Water L. Identification of the peptide sequences within the EIIIA (EDA) segment of fibronectin that mediate integrin alpha9beta1-dependent cellular activities. The Journal of Biological Chemistry. 283: 2858-70. PMID 17967897 DOI: 10.1074/Jbc.M708306200  0.226
2019 Kizer M, Huntress ID, Walcott B, Fraser K, Bystroff C, Wang X. The complex between a multi-crossover DNA nanostructure, PX-DNA, and T7 endonuclease I. Biochemistry. PMID 30794750 DOI: 10.1021/Acs.Biochem.9B00057  0.223
2017 Banerjee S, Schenkelberg CD, Jordan TB, Reimertz JM, Crone EE, Crone DE, Bystroff C. Mispacking and the fitness landscape of the green fluorescent protein chromophore milieu. Biochemistry. PMID 28074648 DOI: 10.1021/Acs.Biochem.6B00800  0.223
2011 Paredes DI, Watters K, Pitman DJ, Bystroff C, Dordick JS. Comparative void-volume analysis of psychrophilic and mesophilic enzymes: Structural bioinformatics of psychrophilic enzymes reveals sources of core flexibility. Bmc Structural Biology. 11: 42. PMID 22013889 DOI: 10.1186/1472-6807-11-42  0.217
2016 Shirke AN, Basore D, Holton S, Su A, Baugh E, Butterfoss GL, Makhatadze G, Bystroff C, Gross RA. Influence of surface charge, binding site residues and glycosylation on Thielavia terrestris cutinase biochemical characteristics. Applied Microbiology and Biotechnology. PMID 26758295 DOI: 10.1007/S00253-015-7254-1  0.213
1991 Bystroff C, Kraut J. Crystal structure of unliganded Escherichia coli dihydrofolate reductase. Ligand-induced conformational changes and cooperativity in binding. Biochemistry. 30: 2227-39. PMID 1998681 DOI: 10.2210/Pdb1Dra/Pdb  0.212
2009 Cole BJ, Bystroff C. Alpha helical crossovers favor right-handed supersecondary structures by kinetic trapping: the phone cord effect in protein folding. Protein Science : a Publication of the Protein Society. 18: 1602-8. PMID 19569186 DOI: 10.1002/Pro.182  0.206
2002 Bystroff C. MASKER: improved solvent-excluded molecular surface area estimations using Boolean masks. Protein Engineering. 15: 959-65. PMID 12601135 DOI: 10.1093/Protein/15.12.959  0.204
2011 Huang YM, Nayak S, Bystroff C. Quantitative in vivo solubility and reconstitution of truncated circular permutants of green fluorescent protein. Protein Science : a Publication of the Protein Society. 20: 1775-80. PMID 21910151 DOI: 10.1002/Pro.735  0.203
2019 Jordan T, Barcellona C, Basore D, Clark C, Guo Z, Isern S, Nand K, Rabasa G, Shoemaker T, Werner G, Xia K, Yuan X, Linhardt RJ, Michael S, Bystroff C. HPV VLPs as Scaffolds for Vaccine Design Biophysical Journal. 116: 58a. DOI: 10.1016/J.Bpj.2018.11.360  0.198
2001 Bystroff C. An alternative derivation of the equations of motion in torsion space for a branched linear chain. Protein Engineering. 14: 825-8. PMID 11742100 DOI: 10.1093/Protein/14.11.825  0.192
2020 Booth R, Churion K, Bystroff C, Bondos S. Binding, Release, and Detection of Ligands by Ultrabithorax Protein‐Based Materials The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.00631  0.175
2003 Zaki MJ, Jin S, Bystroff C. Mining residue contacts in proteins using local structure predictions. Ieee Transactions On Systems, Man, and Cybernetics. Part B, Cybernetics : a Publication of the Ieee Systems, Man, and Cybernetics Society. 33: 789-801. PMID 18238232 DOI: 10.1109/TSMCB.2003.816916  0.135
2002 Bystroff C, Shao Y. Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA. Bioinformatics (Oxford, England). 18: S54-61. PMID 12169531  0.129
2024 Banerjee S, Fraser K, Crone DE, Patel JC, Bondos SE, Bystroff C. Challenges and Solutions for Leave-One-Out Biosensor Design in the Context of a Rugged Fitness Landscape. Sensors (Basel, Switzerland). 24. PMID 39409420 DOI: 10.3390/s24196380  0.125
2004 Zaki MJ, Nadimpally V, Bardhan D, Bystroff C. Predicting protein folding pathways. Bioinformatics (Oxford, England). 20: i386-93. PMID 15262824 DOI: 10.1093/bioinformatics/bth935  0.108
2005 Huang YM, Bystroff C. Improved pairwise alignment of proteins in the Twilight Zone using local structure predictions 2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts. 243-246. DOI: 10.1109/CSBW.2005.75  0.106
2005 Bystroff C, DeLuca S, McDaniel CN. ECOME: A simple model for an evolving consumption web 2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts. 260-261. DOI: 10.1109/CSBW.2005.56  0.104
2021 Bystroff C. Footprints to singularity: A global population model explains late 20th century slow-down and predicts peak within ten years. Plos One. 16: e0247214. PMID 34014929 DOI: 10.1371/journal.pone.0247214  0.088
2000 Bystroff C. Bioinformatics: Methods and Protocols. Stephen Misener , Stephen A. Krawetz The Quarterly Review of Biology. 75: 450-450. DOI: 10.1086/393644  0.075
2007 Zaki MJ, Bystroff C. Methods of Molecular Biology: Preface Methods in Molecular Biology. 413: v-vii.  0.074
2021 Hwang JY, Nawaz S, Choi J, Wang H, Hussain S, Nawaz M, Lopez-Giraldez F, Jeong K, Dong W, Oh JN, Bilguvar K, Mane S, Lee CK, Bystroff C, Lifton RP, et al. Genetic Defects in Underlie Male Infertility With Multiple Morphological Abnormalities of the Sperm Flagella in Humans and Mice. Frontiers in Cell and Developmental Biology. 9: 662903. PMID 33968937 DOI: 10.3389/fcell.2021.662903  0.072
2012 Huang YM, Bystroff C. Exploring objective functions and cross-terms in the optimization of an energy function for protein design 2012 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2012. 155-162. DOI: 10.1145/2382936.2382956  0.071
2005 Girdhar YA, Bystroff C, Akella S. Efficient sampling of protein folding pathways using HMMSTR and probabilistic roadmaps 2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts. 222-223. DOI: 10.1109/CSBW.2005.59  0.06
2002 Bystroff C. Programming hidden Markov models Scientific Programming. 10: 183-184.  0.059
2025 Booth RM, Jons A, Gong X, Banerjee S, Faulk B, Rye H, Bystroff C, Bondos SE. Immobilization and enhancement of a heterodimeric fluorescence biosensor in fibrous protein biomaterials. Protein Science : a Publication of the Protein Society. 34: e70119. PMID 40261035 DOI: 10.1002/pro.70119  0.059
2025 Nand KN, Bystroff C. Electrostatic potential is the dominant force in antigenic selection of naïve T-cells and B-cells for activation and maturation. Immunology Letters. 107037. PMID 40414461 DOI: 10.1016/j.imlet.2025.107037  0.054
2023 Banerjee S, Schenkelberg CD, Jordan TB, Reimertz JM, Crone EE, Crone DE, Bystroff C. Correction to "Mispacking and the Fitness Landscape of the Green Fluorescent Protein Chromophore Milieu". Biochemistry. PMID 37706254 DOI: 10.1021/acs.biochem.3c00450  0.042
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