Olivier Tenaillon - Publications

Affiliations: 
 

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Couce A, Limdi A, Magnan M, Owen SV, Herren CM, Lenski RE, Tenaillon O, Baym M. Changing fitness effects of mutations through long-term bacterial evolution. Science (New York, N.Y.). 383: eadd1417. PMID 38271521 DOI: 10.1126/science.add1417  0.447
2023 Choudhury A, Gachet B, Dixit Z, Faure R, Gill RT, Tenaillon O. Deep mutational scanning reveals the molecular determinants of RNA polymerase-mediated adaptation and tradeoffs. Nature Communications. 14: 6319. PMID 37813857 DOI: 10.1038/s41467-023-41882-7  0.398
2023 Vigué L, Tenaillon O. Predicting the effect of mutations to investigate recent events of selection across 60,472 strains. Proceedings of the National Academy of Sciences of the United States of America. 120: e2304177120. PMID 37487088 DOI: 10.1073/pnas.2304177120  0.39
2022 Tenaillon O, Matic I. [The impact of neutral mutations on genome evolvability]. Medecine Sciences : M/S. 38: 777-785. PMID 36219077 DOI: 10.1051/medsci/2022122  0.482
2022 Vigué L, Croce G, Petitjean M, Ruppé E, Tenaillon O, Weigt M. Deciphering polymorphism in 61,157 Escherichia coli genomes via epistatic sequence landscapes. Nature Communications. 13: 4030. PMID 35821377 DOI: 10.1038/s41467-022-31643-3  0.319
2022 Birgy A, Magnan M, Hobson CA, Figliuzzi M, Panigoni K, Codde C, Tenaillon O, Jacquier H. Local and Global Protein Interactions Contribute to Residue Entrenchment in Beta-Lactamase TEM-1. Antibiotics (Basel, Switzerland). 11. PMID 35625296 DOI: 10.3390/antibiotics11050652  0.326
2021 Consuegra J, Gaffé J, Lenski RE, Hindré T, Barrick JE, Tenaillon O, Schneider D. Insertion-sequence-mediated mutations both promote and constrain evolvability during a long-term experiment with bacteria. Nature Communications. 12: 980. PMID 33579917 DOI: 10.1038/s41467-021-21210-7  0.502
2021 Bridier-Nahmias A, Launay A, Bleibtreu A, Magnan M, Walewski V, Chatel J, Dion S, Robbe-Saule V, Clermont O, Norel F, Denamur E, Tenaillon O. Escherichia coli Genomic Diversity within Extraintestinal Acute Infections Argues for Adaptive Evolution at Play. Msphere. 6. PMID 33408235 DOI: 10.1128/mSphere.01176-20  0.418
2020 Escudero JA, Nivina A, Kemble HE, Loot C, Tenaillon O, Mazel D. Primary and promiscuous functions coexist during evolutionary innovation through whole protein domain acquisitions. Elife. 9. PMID 33319743 DOI: 10.7554/eLife.58061  0.313
2020 Kemble H, Eisenhauer C, Couce A, Chapron A, Magnan M, Gautier G, Le Nagard H, Nghe P, Tenaillon O. Flux, toxicity, and expression costs generate complex genetic interactions in a metabolic pathway. Science Advances. 6: eabb2236. PMID 32537514 DOI: 10.1126/Sciadv.Abb2236  0.375
2020 Tenaillon O, Matic I. The Impact of Neutral Mutations on Genome Evolvability. Current Biology : Cb. 30: R527-R534. PMID 32428494 DOI: 10.1016/J.Cub.2020.03.056  0.565
2020 Caméléna F, Morel F, Merimèche M, Decousser JW, Jacquier H, Clermont O, Darty M, Mainardis M, Cambau E, Tenaillon O, Denamur E, Berçot B. Genomic characterization of 16S rRNA methyltransferase-producing Escherichia coli isolates from the Parisian area, France. The Journal of Antimicrobial Chemotherapy. PMID 32300786 DOI: 10.1093/Jac/Dkaa105  0.301
2020 Choudhury A, Fenster JA, Fankhauser RG, Kaar JL, Tenaillon O, Gill RT. CRISPR/Cas9 recombineering-mediated deep mutational scanning of essential genes in Escherichia coli. Molecular Systems Biology. 16: e9265. PMID 32175691 DOI: 10.15252/Msb.20199265  0.535
2020 Hobson CA, Bonacorsi S, Hocquet D, Baruchel A, Fahd M, Storme T, Tang R, Doit C, Tenaillon O, Birgy A. Impact of anticancer chemotherapy on the extension of beta-lactamase spectrum: an example with KPC-type carbapenemase activity towards ceftazidime-avibactam. Scientific Reports. 10: 589. PMID 31953453 DOI: 10.1038/S41598-020-57505-W  0.463
2019 Kemble H, Nghe P, Tenaillon O. Recent insights into the genotype-phenotype relationship from massively parallel genetic assays. Evolutionary Applications. 12: 1721-1742. PMID 31548853 DOI: 10.1111/Eva.12846  0.428
2019 Ghalayini M, Magnan M, Dion S, Zatout O, Bourguignon L, Tenaillon O, Lescat M. Long-term evolution of the natural isolate of Escherichia coli 536 in the mouse gut colonized after maternal transmission reveals convergence in the constitutive expression of the lactose operon. Molecular Ecology. PMID 31482587 DOI: 10.1111/Mec.15232  0.404
2019 Mahérault AC, Kemble H, Magnan M, Gachet B, Roche D, Nagard HL, Tenaillon O, Denamur E, Branger C, Landraud L. acquisition and evolution of gene bearing plasmids in : advantage of the F2:A1:B- IncF pandemic plasmid over IncC plasmids. Antimicrobial Agents and Chemotherapy. PMID 31332067 DOI: 10.1128/Aac.01130-19  0.308
2019 Couce A, Tenaillon O. Mutation bias and GC content shape antimutator invasions. Nature Communications. 10: 3114. PMID 31308380 DOI: 10.1038/S41467-019-11217-6  0.557
2018 Ghalayini M, Launay A, Bridier-Nahmias A, Clermont O, Denamur E, Lescat M, Tenaillon O. Evolution of a Dominant Natural Isolate of Escherichia coli in the Human Gut over the Course of a Year Suggests a Neutral Evolution with Reduced Effective Population Size. Applied and Environmental Microbiology. 84. PMID 29305507 DOI: 10.1128/Aem.02377-17  0.495
2017 Couce A, Caudwell LV, Feinauer C, Hindré T, Feugeas JP, Weigt M, Lenski RE, Schneider D, Tenaillon O. Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria. Proceedings of the National Academy of Sciences of the United States of America. 114: E9026-E9035. PMID 29073099 DOI: 10.1073/Pnas.1705887114  0.585
2017 Bosshard L, Dupanloup I, Tenaillon O, Bruggmann R, Ackermann M, Peischl S, Excoffier L. Accumulation of Deleterious Mutations During Bacterial Range Expansions. Genetics. PMID 28821588 DOI: 10.1534/Genetics.117.300144  0.549
2017 Lescat M, Launay A, Ghalayini M, Magnan M, Glodt J, Pintard C, Dion S, Denamur E, Tenaillon O. Using long-term experimental evolution to uncover the patterns and determinants of molecular evolution of an Escherichia coli natural isolate in the streptomycin-treated mouse gut. Molecular Ecology. 26: 1802-1817. PMID 27661780 DOI: 10.1111/Mec.13851  0.56
2016 Tenaillon O, Barrick JE, Ribeck N, Deatherage DE, Blanchard JL, Dasgupta A, Wu GC, Wielgoss S, Cruveiller S, Médigue C, Schneider D, Lenski RE. Tempo and mode of genome evolution in a 50,000-generation experiment. Nature. PMID 27479321 DOI: 10.1038/Nature18959  0.742
2016 Feugeas JP, Tourret J, Launay A, Bouvet O, Hoede C, Denamur E, Tenaillon O. Links between Transcription, Environmental Adaptation and Gene Variability in Escherichia coli: Correlations between Gene Expression and Gene Variability Reflect Growth Efficiencies. Molecular Biology and Evolution. 33: 2515-29. PMID 27352853 DOI: 10.1093/Molbev/Msw105  0.35
2016 Figliuzzi M, Jacquier H, Schug A, Tenaillon O, Weigt M. Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1 Molecular Biology and Evolution. 33: 268-280. PMID 26446903 DOI: 10.1093/Molbev/Msv211  0.488
2015 Skurnik D, Clermont O, Guillard T, Launay A, Danilchanka O, Pons S, Diancourt L, Lebreton F, Kadlec K, Roux D, Jiang D, Dion S, Achard H, Denamur M, Cywes-Bentley C, ... ... Tenaillon O, et al. Emergence of Antimicrobial Resistant Escherichia coli of Animal Origin Spreading in Humans. Molecular Biology and Evolution. PMID 26613786 DOI: 10.1093/Molbev/Msv280  0.357
2015 Rodríguez-Verdugo A, Tenaillon O, Gaut BS. First-step mutations during adaptation restore the expression of hundreds of genes. Molecular Biology and Evolution. PMID 26500250 DOI: 10.1093/Molbev/Msv228  0.498
2015 Long A, Liti G, Luptak A, Tenaillon O. Elucidating the molecular architecture of adaptation via evolve and resequence experiments. Nature Reviews. Genetics. PMID 26347030 DOI: 10.1038/Nrg3937  0.382
2015 Rodríguez-Beltrán J, Tourret J, Tenaillon O, López E, Bourdelier E, Costas C, Matic I, Denamur E, Blázquez J. High Recombinant Frequency in Extraintestinal Pathogenic Escherichia coli Strains. Molecular Biology and Evolution. 32: 1708-16. PMID 25804522 DOI: 10.1093/Molbev/Msv072  0.423
2014 Blanquart F, Achaz G, Bataillon T, Tenaillon O. Properties of selected mutations and genotypic landscapes under Fisher's geometric model. Evolution; International Journal of Organic Evolution. 68: 3537-54. PMID 25311558 DOI: 10.1111/Evo.12545  0.488
2014 Lescat M, Reibel F, Pintard C, Dion S, Glodt J, Gateau C, Launay A, Ledda A, Cruvellier S, Tourret J, Tenaillon O. The conserved nhaAR operon is drastically divergent between B2 and non-B2 Escherichia coli and is involved in extra-intestinal virulence. Plos One. 9: e108738. PMID 25268639 DOI: 10.1371/Journal.Pone.0108738  0.343
2014 Raeside C, Gaffé J, Deatherage DE, Tenaillon O, Briska AM, Ptashkin RN, Cruveiller S, Médigue C, Lenski RE, Barrick JE, Schneider D. Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. Mbio. 5: e01377-14. PMID 25205090 DOI: 10.1128/Mbio.01377-14  0.424
2014 Plucain J, Hindré T, Le Gac M, Tenaillon O, Cruveiller S, Médigue C, Leiby N, Harcombe WR, Marx CJ, Lenski RE, Schneider D. Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli. Science (New York, N.Y.). 343: 1366-9. PMID 24603152 DOI: 10.1126/Science.1248688  0.543
2014 Achaz G, Rodriguez-Verdugo A, Gaut BS, Tenaillon O. The reproducibility of adaptation in the light of experimental evolution with whole genome sequencing. Advances in Experimental Medicine and Biology. 781: 211-31. PMID 24277302 DOI: 10.1007/978-94-007-7347-9_11  0.447
2013 Díaz-Muñoz SL, Tenaillon O, Goldhill D, Brao K, Turner PE, Chao L. Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages. Bmc Evolutionary Biology. 13: 206. PMID 24059872 DOI: 10.1186/1471-2148-13-206  0.412
2013 Jacquier H, Birgy A, Le Nagard H, Mechulam Y, Schmitt E, Glodt J, Bercot B, Petit E, Poulain J, Barnaud G, Gros PA, Tenaillon O. Capturing the mutational landscape of the beta-lactamase TEM-1. Proceedings of the National Academy of Sciences of the United States of America. 110: 13067-72. PMID 23878237 DOI: 10.1073/Pnas.1215206110  0.519
2013 Maharjan RP, Gaffé J, Plucain J, Schliep M, Wang L, Feng L, Tenaillon O, Ferenci T, Schneider D. A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli. Bmc Genomics. 14: 441. PMID 23822838 DOI: 10.1186/1471-2164-14-441  0.417
2013 Bleibtreu A, Gros PA, Laouénan C, Clermont O, Le Nagard H, Picard B, Tenaillon O, Denamur E. Fitness, stress resistance, and extraintestinal virulence in Escherichia coli. Infection and Immunity. 81: 2733-42. PMID 23690401 DOI: 10.1128/Iai.01329-12  0.344
2013 Rodríguez-Verdugo A, Gaut BS, Tenaillon O. Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress. Bmc Evolutionary Biology. 13: 50. PMID 23433244 DOI: 10.1186/1471-2148-13-50  0.523
2013 Wielgoss S, Barrick JE, Tenaillon O, Wiser MJ, Dittmar WJ, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D. Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load. Proceedings of the National Academy of Sciences of the United States of America. 110: 222-7. PMID 23248287 DOI: 10.1073/Pnas.1219574110  0.739
2012 Tenaillon O, Rodríguez-Verdugo A, Gaut RL, McDonald P, Bennett AF, Long AD, Gaut BS. The molecular diversity of adaptive convergence. Science (New York, N.Y.). 335: 457-61. PMID 22282810 DOI: 10.1126/Science.1212986  0.564
2011 Wielgoss S, Barrick JE, Tenaillon O, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D. Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli. G3 (Bethesda, Md.). 1: 183-186. PMID 22207905 DOI: 10.1534/G3.111.000406  0.712
2011 Le Nagard H, Chao L, Tenaillon O. The emergence of complexity and restricted pleiotropy in adapting networks. Bmc Evolutionary Biology. 11: 326. PMID 22059952 DOI: 10.1186/1471-2148-11-326  0.318
2011 Billard-Pomares T, Tenaillon O, Le Nagard H, Rouy Z, Cruveiller S, Médigue C, Arlet G, Denamur E, Branger C. Complete nucleotide sequence of plasmid pTN48, encoding the CTX-M-14 extended-spectrum β-lactamase from an Escherichia coli O102-ST405 strain. Antimicrobial Agents and Chemotherapy. 55: 1270-3. PMID 21173179 DOI: 10.1128/Aac.01108-10  0.313
2010 Levert M, Zamfir O, Clermont O, Bouvet O, Lespinats S, Hipeaux MC, Branger C, Picard B, Saint-Ruf C, Norel F, Balliau T, Zivy M, Le Nagard H, Cruveiller S, Cruvellier S, ... ... Tenaillon O, et al. Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections. Plos Pathogens. 6: e1001125. PMID 20941353 DOI: 10.1371/Journal.Ppat.1001125  0.391
2010 Tenaillon O, Skurnik D, Picard B, Denamur E. The population genetics of commensal Escherichia coli. Nature Reviews. Microbiology. 8: 207-17. PMID 20157339 DOI: 10.1038/Nrmicro2298  0.373
2009 Lescat M, Calteau A, Hoede C, Barbe V, Touchon M, Rocha E, Tenaillon O, Médigue C, Johnson JR, Denamur E. A module located at a chromosomal integration hot spot is responsible for the multidrug resistance of a reference strain from Escherichia coli clonal group A. Antimicrobial Agents and Chemotherapy. 53: 2283-8. PMID 19364861 DOI: 10.1128/Aac.00123-09  0.383
2009 Gros PA, Tenaillon O. Selection for chaperone-like mediated genetic robustness at low mutation rate: impact of drift, epistasis and complexity. Genetics. 182: 555-64. PMID 19307609 DOI: 10.1534/genetics.108.099366  0.41
2009 Gros PA, Le Nagard H, Tenaillon O. The evolution of epistasis and its links with genetic robustness, complexity and drift in a phenotypic model of adaptation. Genetics. 182: 277-93. PMID 19279327 DOI: 10.1534/Genetics.108.099127  0.5
2009 Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, et al. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. Plos Genetics. 5: e1000344. PMID 19165319 DOI: 10.1371/Journal.Pgen.1000344  0.444
2009 Schubert S, Darlu P, Clermont O, Wieser A, Magistro G, Hoffmann C, Weinert K, Tenaillon O, Matic I, Denamur E. Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species. Plos Pathogens. 5: e1000257. PMID 19132082 DOI: 10.1371/Journal.Ppat.1000257  0.335
2008 Clermont O, Lescat M, O'Brien CL, Gordon DM, Tenaillon O, Denamur E. Evidence for a human-specific Escherichia coli clone. Environmental Microbiology. 10: 1000-6. PMID 18177373 DOI: 10.1111/J.1462-2920.2007.01520.X  0.301
2008 Marais GA, Calteau A, Tenaillon O. Mutation rate and genome reduction in endosymbiotic and free-living bacteria. Genetica. 134: 205-10. PMID 18046510 DOI: 10.1007/S10709-007-9226-6  0.442
2007 Le Gall T, Clermont O, Gouriou S, Picard B, Nassif X, Denamur E, Tenaillon O. Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains. Molecular Biology and Evolution. 24: 2373-84. PMID 17709333 DOI: 10.1093/Molbev/Msm172  0.368
2007 Nora T, Charpentier C, Tenaillon O, Hoede C, Clavel F, Hance AJ. Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment. Journal of Virology. 81: 7620-8. PMID 17494080 DOI: 10.1128/Jvi.00083-07  0.456
2007 Silander OK, Tenaillon O, Chao L. Understanding the evolutionary fate of finite populations: the dynamics of mutational effects. Plos Biology. 5: e94. PMID 17407380 DOI: 10.1371/Journal.Pbio.0050094  0.539
2007 Tenaillon O, Silander OK, Uzan JP, Chao L. Quantifying organismal complexity using a population genetic approach. Plos One. 2: e217. PMID 17299597 DOI: 10.1371/Journal.Pone.0000217  0.326
2006 Hoede C, Denamur E, Tenaillon O. Selection acts on DNA secondary structures to decrease transcriptional mutagenesis. Plos Genetics. 2: e176. PMID 17083275 DOI: 10.1371/Journal.Pgen.0020176  0.465
2006 Charpentier C, Nora T, Tenaillon O, Clavel F, Hance AJ. Extensive recombination among human immunodeficiency virus type 1 quasispecies makes an important contribution to viral diversity in individual patients. Journal of Virology. 80: 2472-82. PMID 16474154 DOI: 10.1128/Jvi.80.5.2472-2482.2006  0.369
2005 Montville R, Froissart R, Remold SK, Tenaillon O, Turner PE. Evolution of mutational robustness in an RNA virus. Plos Biology. 3: e381. PMID 16248678 DOI: 10.1371/Journal.Pbio.0030381  0.516
2005 Denamur E, Tenaillon O, Deschamps C, Skurnik D, Ronco E, Gaillard JL, Picard B, Branger C, Matic I. Intermediate mutation frequencies favor evolution of multidrug resistance in Escherichia coli. Genetics. 171: 825-7. PMID 15965238 DOI: 10.1534/Genetics.105.045526  0.473
2004 Tenaillon O, Denamur E, Matic I. Evolutionary significance of stress-induced mutagenesis in bacteria. Trends in Microbiology. 12: 264-70. PMID 15165604 DOI: 10.1016/J.Tim.2004.04.002  0.376
2004 Tenaillon MI, U'Ren J, Tenaillon O, Gaut BS. Selection versus demography: a multilocus investigation of the domestication process in maize. Molecular Biology and Evolution. 21: 1214-25. PMID 15014173 DOI: 10.1093/Molbev/Msh102  0.363
2003 Bjedov I, Tenaillon O, Gérard B, Souza V, Denamur E, Radman M, Taddei F, Matic I. Stress-induced mutagenesis in bacteria. Science (New York, N.Y.). 300: 1404-9. PMID 12775833 DOI: 10.1126/Science.1082240  0.4
2003 Bjedov I, Lecointre G, Tenaillon O, Vaury C, Radman M, Taddei F, Denamur E, Matic I. Polymorphism of genes encoding SOS polymerases in natural populations of Escherichia coli. Dna Repair. 2: 417-26. PMID 12606122 DOI: 10.1016/S1568-7864(02)00241-0  0.334
2001 Giraud A, Matic I, Tenaillon O, Clara A, Radman M, Fons M, Taddei F. Costs and benefits of high mutation rates: adaptive evolution of bacteria in the mouse gut. Science (New York, N.Y.). 291: 2606-8. PMID 11283373 DOI: 10.1126/Science.1056421  0.551
2001 Tenaillon O, Taddei F, Radmian M, Matic I. Second-order selection in bacterial evolution: selection acting on mutation and recombination rates in the course of adaptation. Research in Microbiology. 152: 11-6. PMID 11281320 DOI: 10.1016/S0923-2508(00)01163-3  0.52
2000 Denamur E, Lecointre G, Darlu P, Tenaillon O, Acquaviva C, Sayada C, Sunjevaric I, Rothstein R, Elion J, Taddei F, Radman M, Matic I. Evolutionary implications of the frequent horizontal transfer of mismatch repair genes. Cell. 103: 711-21. PMID 11114328 DOI: 10.1016/S0092-8674(00)00175-6  0.529
2000 Tenaillon O, Le Nagard H, Godelle B, Taddei F. Mutators and sex in bacteria: conflict between adaptive strategies. Proceedings of the National Academy of Sciences of the United States of America. 97: 10465-70. PMID 10973474 DOI: 10.1073/Pnas.180063397  0.496
1999 Tenaillon O, Toupance B, Le Nagard H, Taddei F, Godelle B. Mutators, population size, adaptive landscape and the adaptation of asexual populations of bacteria. Genetics. 152: 485-93. PMID 10353893  0.471
Show low-probability matches.