Vladimir Yarov-Yarovoy - Publications

University of California, Davis, Davis, CA 
Ion channels, membrane proteins, computational protein structure prediction and design

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Becker EA, Yao AI, Seitzer PM, Kind T, Wang T, Eigenheer R, Shao KS, Yarov-Yarovoy V, Facciotti MT. A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site. Plos One. 11: e0156543. PMID 27327432 DOI: 10.1371/journal.pone.0156543  0.52
2015 Sihn CR, Kim HJ, Woltz RL, Yarov-Yarovoy V, Yang PC, Xu J, Clancy CE, Zhang XD, Chiamvimonvat N, Yamoah EN. Mechanisms of Calmodulin Regulation of Different Isoforms of Kv7.4 K+ Channels. The Journal of Biological Chemistry. PMID 26515070 DOI: 10.1074/jbc.M115.668236  0.52
2015 Yang S, Yang F, Wei N, Hong J, Li B, Luo L, Rong M, Yarov-Yarovoy V, Zheng J, Wang K, Lai R. A pain-inducing centipede toxin targets the heat activation machinery of nociceptor TRPV1. Nature Communications. 6: 8297. PMID 26420335 DOI: 10.1038/ncomms9297  0.52
2015 Schmidt EM, Wiek C, Parkinson OT, Roellecke K, Freund M, Gombert M, Lottmann N, Steward CA, Kramm CM, Yarov-Yarovoy V, Rettie AE, Hanenberg H. Characterization of an Additional Splice Acceptor Site Introduced into CYP4B1 in Hominoidae during Evolution. Plos One. 10: e0137110. PMID 26355749 DOI: 10.1371/journal.pone.0137110  0.52
2015 Kaur G, Pinggera A, Ortner NJ, Lieb A, Sinnegger-Brauns MJ, Yarov-Yarovoy V, Obermair GJ, Flucher BE, Striessnig J. A Polybasic Plasma Membrane Binding Motif in the I-II Linker Stabilizes Voltage-gated CaV1.2 Calcium Channel Function. The Journal of Biological Chemistry. 290: 21086-100. PMID 26100638 DOI: 10.1074/jbc.M115.645671  0.52
2015 Yang F, Xiao X, Cheng W, Yang W, Yu P, Song Z, Yarov-Yarovoy V, Zheng J. Structural mechanism underlying capsaicin binding and activation of the TRPV1 ion channel. Nature Chemical Biology. 11: 518-24. PMID 26053297 DOI: 10.1038/nchembio.1835  0.52
2015 Chen-Izu Y, Shaw RM, Pitt GS, Yarov-Yarovoy V, Sack JT, Abriel H, Aldrich RW, Belardinelli L, Cannell MB, Catterall WA, Chazin WJ, Chiamvimonvat N, Deschenes I, Grandi E, Hund TJ, et al. Na+ channel function, regulation, structure, trafficking and sequestration. The Journal of Physiology. 593: 1347-60. PMID 25772290 DOI: 10.1113/jphysiol.2014.281428  0.52
2015 Wiek C, Schmidt EM, Roellecke K, Freund M, Nakano M, Kelly EJ, Kaisers W, Yarov-Yarovoy V, Kramm CM, Rettie AE, Hanenberg H. Identification of amino acid determinants in CYP4B1 for optimal catalytic processing of 4-ipomeanol. The Biochemical Journal. 465: 103-14. PMID 25247810 DOI: 10.1042/BJ20140813  0.52
2014 Yarov-Yarovoy V, Allen TW, Clancy CE. Computational Models for Predictive Cardiac Ion Channel Pharmacology. Drug Discovery Today. Disease Models. 14: 3-10. PMID 26635886 DOI: 10.1016/j.ddmod.2014.04.001  0.52
2014 Tilley DC, Eum KS, Fletcher-Taylor S, Austin DC, Dupré C, Patrón LA, Garcia RL, Lam K, Yarov-Yarovoy V, Cohen BE, Sack JT. Chemoselective tarantula toxins report voltage activation of wild-type ion channels in live cells. Proceedings of the National Academy of Sciences of the United States of America. 111: E4789-96. PMID 25331865 DOI: 10.1073/pnas.1406876111  0.52
2014 Boiteux C, Vorobyov I, French RJ, French C, Yarov-Yarovoy V, Allen TW. Local anesthetic and antiepileptic drug access and binding to a bacterial voltage-gated sodium channel. Proceedings of the National Academy of Sciences of the United States of America. 111: 13057-62. PMID 25136136 DOI: 10.1073/pnas.1408710111  0.52
2014 Rafizadeh S, Zhang Z, Woltz RL, Kim HJ, Myers RE, Lu L, Tuteja D, Singapuri A, Bigdeli AA, Harchache SB, Knowlton AA, Yarov-Yarovoy V, Yamoah EN, Chiamvimonvat N. Functional interaction with filamin A and intracellular Ca2+ enhance the surface membrane expression of a small-conductance Ca2+-activated K+ (SK2) channel. Proceedings of the National Academy of Sciences of the United States of America. 111: 9989-94. PMID 24951510 DOI: 10.1073/pnas.1323541111  0.52
2013 Wulff H, Yarov-Yarovoy V. Channels: Sticking to nooks and crannies. Nature Chemical Biology. 9: 473-4. PMID 23868316 DOI: 10.1038/nchembio.1292  0.52
2013 Timofeyev V, Myers RE, Kim HJ, Woltz RL, Sirish P, Heiserman JP, Li N, Singapuri A, Tang T, Yarov-Yarovoy V, Yamoah EN, Hammond HK, Chiamvimonvat N. Adenylyl cyclase subtype-specific compartmentalization: differential regulation of L-type Ca2+ current in ventricular myocytes. Circulation Research. 112: 1567-76. PMID 23609114 DOI: 10.1161/CIRCRESAHA.112.300370  0.52
2013 Acar S, Carlson DB, Budamagunta MS, Yarov-Yarovoy V, Correia JJ, Niñonuevo MR, Jia W, Tao L, Leary JA, Voss JC, Evans JE, Scholey JM. The bipolar assembly domain of the mitotic motor kinesin-5 Nature Communications. 4. PMID 23299893 DOI: 10.1038/ncomms2348  0.52
2012 Khafaga M, Bossuyt J, Mamikonian L, Li JC, Lee LL, Yarov-Yarovoy V, Despa S, Bers DM. Na⁺/K⁺-ATPase E960 and phospholemman F28 are critical for their functional interaction. Proceedings of the National Academy of Sciences of the United States of America. 109: 20756-61. PMID 23185013 DOI: 10.1073/pnas.1207866109  0.52
2012 Vargas E, Yarov-Yarovoy V, Khalili-Araghi F, Catterall WA, Klein ML, Tarek M, Lindahl E, Schulten K, Perozo E, Bezanilla F, Roux B. An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations. The Journal of General Physiology. 140: 587-94. PMID 23183694 DOI: 10.1085/jgp.201210873  0.52
2012 Zhang JZ, Yarov-Yarovoy V, Scheuer T, Karbat I, Cohen L, Gordon D, Gurevitz M, Catterall WA. Mapping the interaction site for a β-scorpion toxin in the pore module of domain III of voltage-gated Na(+) channels. The Journal of Biological Chemistry. 287: 30719-28. PMID 22761417 DOI: 10.1074/jbc.M112.370742  0.52
2012 Cui Y, Yang F, Cao X, Yarov-Yarovoy V, Wang K, Zheng J. Selective disruption of high sensitivity heat activation but not capsaicin activation of TRPV1 channels by pore turret mutations. The Journal of General Physiology. 139: 273-83. PMID 22412190 DOI: 10.1085/jgp.201110724  0.52
2012 Maselli RA, Fernandez JM, Arredondo J, Navarro C, Ngo M, Beeson D, Cagney O, Williams DC, Wollmann RL, Yarov-Yarovoy V, Ferns MJ. LG2 agrin mutation causing severe congenital myasthenic syndrome mimics functional characteristics of non-neural (z-) agrin. Human Genetics. 131: 1123-35. PMID 22205389 DOI: 10.1007/s00439-011-1132-4  0.52
2012 Yarov-Yarovoy V, DeCaen PG, Westenbroek RE, Pan CY, Scheuer T, Baker D, Catterall WA. Structural basis for gating charge movement in the voltage sensor of a sodium channel. Proceedings of the National Academy of Sciences of the United States of America. 109: E93-102. PMID 22160714 DOI: 10.1073/pnas.1118434109  0.52
2011 Oganesian A, Yarov-Yarovoy V, Parks WC, Schwinn DA. Constitutive coupling of a naturally occurring human alpha1a-adrenergic receptor genetic variant to EGFR transactivation pathway. Proceedings of the National Academy of Sciences of the United States of America. 108: 19796-801. PMID 22089237 DOI: 10.1073/pnas.1116271108  0.52
2011 DeCaen PG, Yarov-Yarovoy V, Scheuer T, Catterall WA. Gating charge interactions with the S1 segment during activation of a Na+ channel voltage sensor. Proceedings of the National Academy of Sciences of the United States of America. 108: 18825-30. PMID 22042870 DOI: 10.1073/pnas.1116449108  0.52
2011 Wang J, Yarov-Yarovoy V, Kahn R, Gordon D, Gurevitz M, Scheuer T, Catterall WA. Mapping the receptor site for alpha-scorpion toxins on a Na+ channel voltage sensor. Proceedings of the National Academy of Sciences of the United States of America. 108: 15426-31. PMID 21876146 DOI: 10.1073/pnas.1112320108  0.52
2011 Zhang JZ, Yarov-Yarovoy V, Scheuer T, Karbat I, Cohen L, Gordon D, Gurevitz M, Catterall WA. Structure-function map of the receptor site for β-scorpion toxins in domain II of voltage-gated sodium channels. The Journal of Biological Chemistry. 286: 33641-51. PMID 21795675 DOI: 10.1074/jbc.M111.282509  0.52
2011 Kelly EJ, Nakano M, Rohatgi P, Yarov-Yarovoy V, Rettie AE. Finding homes for orphan cytochrome P450s: CYP4V2 and CYP4F22 in disease states. Molecular Interventions. 11: 124-32. PMID 21540472 DOI: 10.1124/mi.11.2.10  0.52
2010 Subbotina J, Yarov-Yarovoy V, Lees-Miller J, Durdagi S, Guo J, Duff HJ, Noskov SY. Structural refinement of the hERG1 pore and voltage-sensing domains with ROSETTA-membrane and molecular dynamics simulations. Proteins. 78: 2922-34. PMID 20740484 DOI: 10.1002/prot.22815  0.52
2010 Khalili-Araghi F, Jogini V, Yarov-Yarovoy V, Tajkhorshid E, Roux B, Schulten K. Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel. Biophysical Journal. 98: 2189-98. PMID 20483327 DOI: 10.1016/j.bpj.2010.02.056  0.52
2010 Catterall WA, Yarov-Yarovoy V. Helical motion of an S4 voltage sensor revealed by gating pore currents. Channels (Austin, Tex.). 4: 75-7. PMID 20139706 DOI: 10.4161/chan.4.2.10998  0.52
2009 DeCaen PG, Yarov-Yarovoy V, Sharp EM, Scheuer T, Catterall WA. Sequential formation of ion pairs during activation of a sodium channel voltage sensor. Proceedings of the National Academy of Sciences of the United States of America. 106: 22498-503. PMID 20007787 DOI: 10.1073/pnas.0912307106  0.52
2009 Lees-Miller JP, Subbotina JO, Guo J, Yarov-Yarovoy V, Noskov SY, Duff HJ. Interactions of H562 in the S5 helix with T618 and S621 in the pore helix are important determinants of hERG1 potassium channel structure and function. Biophysical Journal. 96: 3600-10. PMID 19413965 DOI: 10.1016/j.bpj.2009.01.028  0.52
2008 DeCaen PG, Yarov-Yarovoy V, Zhao Y, Scheuer T, Catterall WA. Disulfide locking a sodium channel voltage sensor reveals ion pair formation during activation. Proceedings of the National Academy of Sciences of the United States of America. 105: 15142-7. PMID 18809926 DOI: 10.1073/pnas.0806486105  0.52
2007 Pathak MM, Yarov-Yarovoy V, Agarwal G, Roux B, Barth P, Kohout S, Tombola F, Isacoff EY. Closing in on the resting state of the Shaker K(+) channel. Neuron. 56: 124-40. PMID 17920020 DOI: 10.1016/j.neuron.2007.09.023  0.52
2007 Catterall WA, Cestèle S, Yarov-Yarovoy V, Yu FH, Konoki K, Scheuer T. Voltage-gated ion channels and gating modifier toxins. Toxicon : Official Journal of the International Society On Toxinology. 49: 124-41. PMID 17239913 DOI: 10.1016/j.toxicon.2006.09.022  0.52
2006 Hulme JT, Yarov-Yarovoy V, Lin TW, Scheuer T, Catterall WA. Autoinhibitory control of the CaV1.2 channel by its proteolytically processed distal C-terminal domain. The Journal of Physiology. 576: 87-102. PMID 16809371 DOI: 10.1113/jphysiol.2006.111799  0.52
2006 Cestèle S, Yarov-Yarovoy V, Qu Y, Sampieri F, Scheuer T, Catterall WA. Structure and function of the voltage sensor of sodium channels probed by a beta-scorpion toxin. The Journal of Biological Chemistry. 281: 21332-44. PMID 16679310 DOI: 10.1074/jbc.M603814200  0.52
2006 Yarov-Yarovoy V, Baker D, Catterall WA. Voltage sensor conformations in the open and closed states in ROSETTA structural models of K(+) channels. Proceedings of the National Academy of Sciences of the United States of America. 103: 7292-7. PMID 16648251 DOI: 10.1073/pnas.0602350103  0.52
2006 Yarov-Yarovoy V, Schonbrun J, Baker D. Multipass membrane protein structure prediction using Rosetta. Proteins. 62: 1010-25. PMID 16372357 DOI: 10.1002/prot.20817  0.52
2005 Yu FH, Yarov-Yarovoy V, Gutman GA, Catterall WA. Overview of molecular relationships in the voltage-gated ion channel superfamily. Pharmacological Reviews. 57: 387-95. PMID 16382097 DOI: 10.1124/pr.57.4.13  0.52
2004 Zhao Y, Yarov-Yarovoy V, Scheuer T, Catterall WA. A gating hinge in Na+ channels; a molecular switch for electrical signaling. Neuron. 41: 859-65. PMID 15046719 DOI: 10.1016/S0896-6273(04)00116-3  0.52
2002 Yarov-Yarovoy V, McPhee JC, Idsvoog D, Pate C, Scheuer T, Catterall WA. Role of amino acid residues in transmembrane segments IS6 and IIS6 of the Na+ channel alpha subunit in voltage-dependent gating and drug block. The Journal of Biological Chemistry. 277: 35393-401. PMID 12130650 DOI: 10.1074/jbc.M206126200  0.52
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