Daniel F. Simola, Ph.D. - Publications

Affiliations: 
University of Pennsylvania, Philadelphia, PA, United States 

13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Kumar V, Sanseau P, Simola DF, Hurle MR, Agarwal P. Systematic Analysis of Drug Targets Confirms Expression in Disease-Relevant Tissues. Scientific Reports. 6: 36205. PMID 27824084 DOI: 10.1038/Srep36205  0.329
2016 Capell BC, Drake AM, Zhu J, Shah PP, Dou Z, Dorsey J, Simola DF, Donahue G, Sammons M, Rai TS, Natale C, Ridky TW, Adams PD, Berger SL. MLL1 is essential for the senescence-associated secretory phenotype. Genes & Development. 30: 321-36. PMID 26833731 DOI: 10.1101/Gad.271882.115  0.374
2016 Simola DF, Graham RJ, Brady CM, Enzmann BL, Desplan C, Ray A, Zwiebel LJ, Bonasio R, Reinberg D, Liebig J, Berger SL. Epigenetic (re)programming of caste-specific behavior in the ant Camponotus floridanus. Science (New York, N.Y.). 351. PMID 26722000 DOI: 10.1126/Science.Aac6633  0.301
2015 Schrader L, Simola DF, Heinze J, Oettler J. Sphingolipids, Transcription Factors, and Conserved Toolkit Genes: Developmental Plasticity in the Ant Cardiocondyla obscurior. Molecular Biology and Evolution. 32: 1474-86. PMID 25725431 DOI: 10.1093/Molbev/Msv039  0.486
2015 Yan H, Bonasio R, Simola DF, Liebig J, Berger SL, Reinberg D. DNA methylation in social insects: how epigenetics can control behavior and longevity. Annual Review of Entomology. 60: 435-52. PMID 25341091 DOI: 10.1146/Annurev-Ento-010814-020803  0.387
2014 Yan H, Simola DF, Bonasio R, Liebig J, Berger SL, Reinberg D. Eusocial insects as emerging models for behavioural epigenetics. Nature Reviews. Genetics. 15: 677-88. PMID 25200663 DOI: 10.1038/Nrg3787  0.347
2013 Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, et al. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Research. 23: 1235-47. PMID 23636946 DOI: 10.1101/Gr.155408.113  0.519
2013 Wissler L, Gadau J, Simola DF, Helmkampf M, Bornberg-Bauer E. Mechanisms and dynamics of orphan gene emergence in insect genomes. Genome Biology and Evolution. 5: 439-55. PMID 23348040 DOI: 10.1093/Gbe/Evt009  0.51
2013 Simola DF, Ye C, Mutti NS, Dolezal K, Bonasio R, Liebig J, Reinberg D, Berger SL. A chromatin link to caste identity in the carpenter ant Camponotus floridanus. Genome Research. 23: 486-96. PMID 23212948 DOI: 10.1101/Gr.148361.112  0.463
2012 Gadau J, Helmkampf M, Nygaard S, Roux J, Simola DF, Smith CR, Suen G, Wurm Y, Smith CD. The genomic impact of 100 million years of social evolution in seven ant species. Trends in Genetics : Tig. 28: 14-21. PMID 21982512 DOI: 10.1016/J.Tig.2011.08.005  0.362
2011 Simola DF, Kim J. Sniper: improved SNP discovery by multiply mapping deep sequenced reads. Genome Biology. 12: R55. PMID 21689413 DOI: 10.1186/Gb-2011-12-6-R55  0.454
2011 Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S. Genome-wide survey of natural selection on functional, structural, and network properties of polymorphic sites in Saccharomyces paradoxus. Molecular Biology and Evolution. 28: 2615-27. PMID 21478372 DOI: 10.1093/Molbev/Msr085  0.37
2010 Simola DF, Francis C, Sniegowski PD, Kim J. Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes. Genome Biology. 11: R105. PMID 20969771 DOI: 10.1186/Gb-2010-11-10-R105  0.505
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