Ward C. Wheeler, Ph.D. - Publications

1989- Invertebrate Zoology American Museum of Natural History, New York, NY, United States 
 1989- Computer Science City University of New York, New York, NY, United States 
Systematics, Computer Science, Bioinformatics Biology

129 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Ballesteros JA, Setton EVW, Santibáñez López CE, Arango CP, Brenneis G, Brix S, Corbett KF, Cano-Sánchez E, Dandouch M, Dilly GF, Eleaume MP, Gainett G, Gallut C, McAtee S, McIntyre L, ... ... Wheeler WC, et al. Phylogenomic resolution of sea spider diversification through integration of multiple data classes. Molecular Biology and Evolution. PMID 32915961 DOI: 10.1093/Molbev/Msaa228  0.88
2019 Salinas NR, Wheeler WC. Statistical Modeling of Distribution Patterns: a Markov Random Field Implementation and its Application on Areas of Endemism. Systematic Biology. PMID 31125064 DOI: 10.1093/Sysbio/Syz033  1
2018 Matos-Maraví P, Matzke NJ, Larabee FJ, Clouse RM, Wheeler WC, Sorger DM, Suarez AV, Janda M. Taxon Cycle predictions supported by model-based inference in Indo-Pacific trap-jaw ants (Hymenoptera: Formicidae: Odontomachus). Molecular Ecology. PMID 30106242 DOI: 10.1111/Mec.14835  0.88
2017 Setton EVW, March LE, Nolan ED, Jones TE, Cho H, Wheeler WC, Extavour CG, Sharma PP. Expression and function of spineless orthologs correlate with distal deutocerebral appendage morphology across Arthropoda. Developmental Biology. PMID 28764892 DOI: 10.1016/J.Ydbio.2017.07.016  0.88
2017 Sharma PP, Oberski JT, Santiago MA, Kriebel R, Lipps SM, Buenavente PAC, Diesmos AC, Janda M, Boyer SL, Clouse RM, Wheeler WC. There is no evidence that Podoctidae carry eggs of their own species: Reply to Machado and Wolff (2017). Molecular Phylogenetics and Evolution. PMID 28433248 DOI: 10.1016/J.Ympev.2017.03.026  0.88
2017 Peloso PL, Raxworthy CJ, Wheeler WC, Frost DR. Nomenclatural stability does not justify recognition of paraphyletic taxa: A response to Scherz et al. (2016). Molecular Phylogenetics and Evolution. 111: 56-64. PMID 28336422 DOI: 10.1016/J.Ympev.2017.03.016  0.52
2016 Sharma PP, Santiago MA, Kriebel R, Lipps SM, Buenavente PA, Diesmos AC, Janda M, Boyer SL, Clouse RM, Wheeler WC. A multilocus phylogeny of Podoctidae (Arachnida, Opiliones, Laniatores) and parametric shape analysis reveal the disutility of subfamilial nomenclature in armored harvestman systematics. Molecular Phylogenetics and Evolution. PMID 27664345 DOI: 10.1016/J.Ympev.2016.09.019  0.88
2016 Sharma PP, Clouse RM, Wheeler WC. Hennig's semaphoront concept and the use of ontogenetic stages in phylogenetic reconstruction Cladistics. DOI: 10.1111/Cla.12156  0.88
2015 Sharma PP, Santiago MA, González-Santillán E, Monod L, Wheeler WC. Evidence of duplicated Hox genes in the most recent common ancestor of extant scorpions. Evolution & Development. 17: 347-55. PMID 26492826 DOI: 10.1111/Ede.12166  0.88
2015 Wheeler WC. Phylogenetic network analysis as a parsimony optimization problem. Bmc Bioinformatics. 16: 296. PMID 26382078 DOI: 10.1186/S12859-015-0675-0  1
2015 Pedraza-Peñalosa P, Salinas NR, Virnig AL, Wheeler WC. Preliminary phylogenetic analysis of the Andean clade and the placement of new Colombian blueberries (Ericaceae, Vaccinieae). Phytokeys. 13-31. PMID 25987883 DOI: 10.3897/Phytokeys.49.8622  1
2015 Sharma PP, Tarazona OA, Lopez DH, Schwager EE, Cohn MJ, Wheeler WC, Extavour CG. A conserved genetic mechanism specifies deutocerebral appendage identity in insects and arachnids. Proceedings. Biological Sciences / the Royal Society. 282: 20150698. PMID 25948691 DOI: 10.1098/Rspb.2015.0698  1
2015 McMahan CD, Freeborn LR, Wheeler WC, Crother BI. Forked Tongues Revisited: Molecular Apomorphies Support Morphological Hypotheses of Squamate Evolution Copeia. 103: 525-529. DOI: 10.1643/Ch-14-015  1
2015 Grace-Lema DM, Yared S, Quitadamo A, Janies DA, Wheeler WC, Balkew M, Hailu A, Warburg A, Clouse RM. A phylogeny of sand flies (Diptera: Psychodidae: Phlebotominae), using recent Ethiopian collections and a broad selection of publicly available DNA sequence data Systematic Entomology. 40: 733-744. DOI: 10.1111/Syen.12135  0.88
2015 Peloso PLV, Frost DR, Richards SJ, Rodrigues MT, Donnellan S, Matsui M, Raxworthy CJ, Biju SD, Lemmon EM, Lemmon AR, Wheeler WC. The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae) Cladistics. DOI: 10.1111/Cla.12118  0.52
2015 Clouse RM, Janda M, Blanchard B, Sharma P, Hoffmann BD, Andersen AN, Czekanski-Moir JE, Krushelnycky P, Rabeling C, Wilson EO, Economo EP, Sarnat EM, General DM, Alpert GD, Wheeler WC. Molecular phylogeny of Indo-Pacific carpenter ants (Hymenoptera: Formicidae, Camponotus) reveals waves of dispersal and colonization from diverse source areas Cladistics. 31: 424-437. DOI: 10.1111/Cla.12099  1
2015 Wheeler WC, Lucaroni N, Hong L, Crowley LM, Varón A. POY version 5: Phylogenetic analysis using dynamic homologies under multiple optimality criteria Cladistics. 31: 189-196. DOI: 10.1111/Cla.12083  1
2015 Wheeler WC, Whiteley PM. Historical linguistics as a sequence optimization problem: The evolution and biogeography of Uto-Aztecan languages Cladistics. 31: 113-125. DOI: 10.1111/Cla.12078  1
2015 Clouse RM, Sharma PP, Stuart JC, Davis LR, Giribet G, Boyer SL, Wheeler WC. Phylogeography of the harvestman genus Metasiro (Arthropoda, Arachnida, Opiliones) reveals a potential solution to the Pangean paradox Organisms Diversity and Evolution. DOI: 10.1007/S13127-015-0233-7  0.88
2014 Sharma PP, Schwager EE, Extavour CG, Wheeler WC. Hox gene duplications correlate with posterior heteronomy in scorpions. Proceedings. Biological Sciences / the Royal Society. 281. PMID 25122224 DOI: 10.1098/Rspb.2014.0661  1
2014 Sharma PP, Kaluziak ST, Pérez-Porro AR, González VL, Hormiga G, Wheeler WC, Giribet G. Phylogenomic interrogation of arachnida reveals systemic conflicts in phylogenetic signal. Molecular Biology and Evolution. 31: 2963-84. PMID 25107551 DOI: 10.1093/Molbev/Msu235  1
2014 Clouse RM, Wheeler WC. Descriptions of two new, cryptic species of Metasiro (Arachnida: Opiliones: Cyphophthalmi: Neogoveidae) from South Carolina, USA, including a discussion of mitochondrial mutation rates. Zootaxa. 177-201. PMID 24943422 DOI: 10.11646/Zootaxa.3814.2.2  1
2014 Kannan L, Wheeler WC. Exactly computing the parsimony scores on phylogenetic networks using dynamic programming. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 21: 303-19. PMID 24559134 DOI: 10.1089/Cmb.2013.0134  1
2014 Sharma PP, Gupta T, Schwager EE, Wheeler WC, Extavour CG. Subdivision of arthropod cap-n-collar expression domains is restricted to Mandibulata. Evodevo. 5: 3. PMID 24405788 DOI: 10.1186/2041-9139-5-3  1
2014 Peloso PLV, Sturaro MJ, Forlani MC, Gaucher P, Motta AP, Wheeler WC. Phylogeny, taxonomic revision, and character evolution of the genera chiasmocleis and syncope (anura, microhylidae) in Amazonia, with descriptions of three new species Bulletin of the American Museum of Natural History. 1-112. DOI: 10.1206/834.1  1
2014 Sharma PP, Wheeler WC. Cross-bracing uncalibrated nodes in molecular dating improves congruence of fossil and molecular age estimates Frontiers in Zoology. 11. DOI: 10.1186/S12983-014-0057-X  1
2014 Wheeler WC. Phyletic groups on networks Cladistics. 30: 447-451. DOI: 10.1111/Cla.12062  1
2014 Wheeler WC. Maximum a posteriori probability assignment (MAP-A): An optimality criterion for phylogenetic trees via weighting and dynamic programming Cladistics. 30: 282-290. DOI: 10.1111/Cla.12046  1
2013 Sharma PP, Zardus JD, Boyle EE, González VL, Jennings RM, McIntyre E, Wheeler WC, Etter RJ, Giribet G. Into the deep: a phylogenetic approach to the bivalve subclass Protobranchia. Molecular Phylogenetics and Evolution. 69: 188-204. PMID 23742885 DOI: 10.1016/J.Ympev.2013.05.018  1
2013 Clouse RM, Sharma PP, Giribet G, Wheeler WC. Elongation factor-1α, a putative single-copy nuclear gene, has divergent sets of paralogs in an arachnid. Molecular Phylogenetics and Evolution. 68: 471-81. PMID 23669012 DOI: 10.1016/J.Ympev.2013.04.025  1
2013 Varón A, Wheeler WC. Local search for the generalized tree alignment problem. Bmc Bioinformatics. 14: 66. PMID 23441880 DOI: 10.1186/1471-2105-14-66  1
2013 Payne A, Barden PM, Wheeler WC, Carpenter JM. Direct optimization, sensitivity analysis, and the evolution of the hymenopteran superfamilies American Museum Novitates. 1-19. DOI: 10.1206/3789.1  1
2013 Pedraza-Peñalosa P, Salinas NR, Wheeler WC. Venation patterns of neotropical blueberries (Vaccinieae: Ericaceae) and their phylogenetic utility Phytotaxa. 96: 1-53. DOI: 10.11646/Phytotaxa.96.1.1  1
2013 Jungfer KH, Faivovich J, Padial JM, Castroviejo-Fisher S, Lyra MM, V. M. Berneck B, Iglesias PP, Kok PJR, Macculloch RD, Rodrigues MT, Verdade VK, Torres Gastello CP, Chaparro JC, Valdujo PH, Reichle S, ... ... Wheeler WC, et al. Systematics of spiny-backed treefrogs (Hylidae: Osteocephalus): An Amazonian puzzle Zoologica Scripta. 42: 351-380. DOI: 10.1111/Zsc.12015  1
2013 Sharma PP, Wheeler WC. Revenant clades in historical biogeography: The geology of New Zealand predisposes endemic clades to root age shifts Journal of Biogeography. 40: 1609-1618. DOI: 10.1111/Jbi.12112  1
2013 Blotto BL, Nuñez JJ, Basso NG, Úbeda CA, Wheeler WC, Faivovich J. Phylogenetic relationships of a Patagonian frog radiation, the Alsodes+Eupsophus clade (Anura: Alsodidae), with comments on the supposed paraphyly of Eupsophus Cladistics. 29: 113-131. DOI: 10.1111/J.1096-0031.2012.00417.X  1
2012 Janies DA, Pomeroy LW, Aaronson JM, Handelman S, Hardman J, Kawalec K, Bitterman T, Wheeler WC. Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service. Cladistics : the International Journal of the Willi Hennig Society. 28: 483-488. PMID 32313365 DOI: 10.1111/J.1096-0031.2012.00401.X  0.88
2012 Varón A, Wheeler WC. The tree alignment problem. Bmc Bioinformatics. 13: 293. PMID 23140486 DOI: 10.1186/1471-2105-13-293  1
2012 Kannan L, Wheeler WC. Maximum Parsimony on Phylogenetic networks. Algorithms For Molecular Biology : Amb. 7: 9. PMID 22551229 DOI: 10.1186/1748-7188-7-9  1
2012 Faivovich J, Ferraro DP, Basso NG, Haddad CFB, Rodrigues MT, Wheeler WC, Lavilla EO. A phylogenetic analysis of Pleurodema (Anura: Leptodactylidae: Leiuperinae) based on mitochondrial and nuclear gene sequences, with comments on the evolution of anuran foam nests Cladistics. 28: 460-482. DOI: 10.1111/J.1096-0031.2012.00406.X  1
2012 Denton JSS, Wheeler WC. Indel information eliminates trivial sequence alignment in maximum likelihood phylogenetic analysis Cladistics. 28: 514-528. DOI: 10.1111/J.1096-0031.2012.00402.X  1
2012 Janies DA, Pomeroy LW, Aaronson JM, Handelman S, Hardman J, Kawalec K, Bitterman T, Wheeler WC. Analysis and visualization of h7 influenza using genomic, evolutionary and geographic information in a modular web service Cladistics. 28: 483-488. DOI: 10.1111/j.1096-0031.2012.00401.x  1
2012 Wheeler WC. Trivial minimization of extra-steps under dynamic homology Cladistics. 28: 188-189. DOI: 10.1111/J.1096-0031.2011.00369.X  1
2012 Sharkey MJ, Carpenter JM, Vilhelmsen L, Heraty J, Liljeblad J, Dowling APG, Schulmeister S, Murray D, Deans AR, Ronquist F, Krogmann L, Wheeler WC. Phylogenetic relationships among superfamilies of Hymenoptera Cladistics. 28: 80-112. DOI: 10.1111/J.1096-0031.2011.00366.X  1
2012 Wheeler WC. Systematics: A Course of Lectures Systematics: a Course of Lectures. DOI: 10.1002/9781118301081  1
2011 Janies DA, Treseder T, Alexandrov B, Habib F, Chen JJ, Ferreira R, Çatalyürek Ü, Varón A, Wheeler WC. The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases. Cladistics : the International Journal of the Willi Hennig Society. 27: 61-66. PMID 32313364 DOI: 10.1111/J.1096-0031.2010.00314.X  0.88
2011 Heraty J, Ronquist F, Carpenter JM, Hawks D, Schulmeister S, Dowling AP, Murray D, Munro J, Wheeler WC, Schiff N, Sharkey M. Evolution of the hymenopteran megaradiation. Molecular Phylogenetics and Evolution. 60: 73-88. PMID 21540117 DOI: 10.1016/J.Ympev.2011.04.003  1
2011 Janies DA, Treseder T, Alexandrov B, Habib F, Chen JJ, Ferreira R, Çatalyürek U, Varón A, Wheeler WC. The Supramap project: Linking pathogen genomes with geography to fight emergent infectious diseases Cladistics. 27: 61-66. DOI: 10.1111/j.1096-0031.2010.00314.x  1
2010 Wheeler WC. Distinctions between optimal and expected support Cladistics. 26: 657-663. DOI: 10.1111/J.1096-0031.2010.00308.X  1
2010 Faivovich J, Haddad CFB, Baêta D, Jungfer KH, Álvares GFR, Brandão RA, Sheil C, Barrientos LS, Barrio-Amorós CL, Cruz CAG, Wheeler WC. The phylogenetic relationships of the charismatic poster frogs, Phyllomedusinae (Anura, Hylidae) Cladistics. 26: 227-261. DOI: 10.1111/J.1096-0031.2009.00287.X  1
2010 Varón A, Vinh LS, Wheeler WC. POY version 4: Phylogenetic analysis using dynamic homologies Cladistics. 26: 72-85. DOI: 10.1111/J.1096-0031.2009.00282.X  1
2009 Hejnol A, Obst M, Stamatakis A, Ott M, Rouse GW, Edgecombe GD, Martinez P, Baguñà J, Bailly X, Jondelius U, Wiens M, Müller WE, Seaver E, Wheeler WC, Martindale MQ, et al. Assessing the root of bilaterian animals with scalable phylogenomic methods. Proceedings. Biological Sciences / the Royal Society. 276: 4261-70. PMID 19759036 DOI: 10.1098/Rspb.2009.0896  1
2009 Leo Smith WM, Smith KR, Wheeler WC. Mitochondrial intergenic spacer in fairy basslets (Serranidae: Anthiinae) and the simultaneous analysis of nucleotide and rearrangement data American Museum Novitates. 1-10. DOI: 10.1206/518.1  1
2009 Schuh RT, Weirauch C, Wheeler WC. Phylogenetic relationships within the Cimicomorpha (Hemiptera: Heteroptera): A total-evidence analysis Systematic Entomology. 34: 15-48. DOI: 10.1111/J.1365-3113.2008.00436.X  1
2009 Wheeler WC, Giribet G. Phylogenetic hypotheses and the utility of multiple sequence alignment Sequence Alignment: Methods, Models, Concepts, and Strategies. 93-102.  1
2008 Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, Smith SA, Seaver E, Rouse GW, Obst M, Edgecombe GD, Sørensen MV, Haddock SH, Schmidt-Rhaesa A, Okusu A, Kristensen RM, ... Wheeler WC, et al. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature. 452: 745-9. PMID 18322464 DOI: 10.1038/Nature06614  1
2008 Wheeler WC, Pickett KM. Topology-Bayes versus Clade-Bayes in phylogenetic analysis. Molecular Biology and Evolution. 25: 447-53. PMID 18079139 DOI: 10.1093/Molbev/Msm274  1
2008 Grazia J, Schuh RT, Wheeler WC. Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera) Cladistics. 24: 932-976. DOI: 10.1111/J.1096-0031.2008.00224.X  1
2008 Varón A, Wheeler WC. Application note: On extension gap in POY version 3 Cladistics. 24: 1070. DOI: 10.1111/J.1096-0031.2008.00208.X  1
2008 Murienne J, Pellens R, Budinoff RB, Wheeler WC, Grandcolas P. Phylogenetic analysis of the endemic New Caledonian cockroach Lauraesilpha. Testing competing hypotheses of diversification Cladistics. 24: 802-812. DOI: 10.1111/J.1096-0031.2008.00204.X  1
2008 Frost DR, Grant T, Faivovich J, Bain RH, Haas A, Haddad CFB, De Sa RO, Channing A, Wilkinson M, Donnellan SC, Raxworthy CJ, Campbell JA, Blotto BL, Moler P, Drewes RC, ... ... Wheeler WC, et al. Is The Amphibian Tree of Life really fatally flawed? Cladistics. 24: 385-395. DOI: 10.1111/J.1096-0031.2007.00181.X  1
2007 Janies D, Hill AW, Guralnick R, Habib F, Waltari E, Wheeler WC. Genomic analysis and geographic visualization of the spread of avian influenza (H5N1). Systematic Biology. 56: 321-9. PMID 17464886 DOI: 10.1080/10635150701266848  1
2007 Ramírez MJ, Coddington JA, Maddison WP, Midford PE, Prendini L, Miller J, Griswold CE, Hormiga G, Sierwald P, Scharff N, Benjamin SP, Wheeler WC. Linking of digital images to phylogenetic data matrices using a morphological ontology. Systematic Biology. 56: 283-94. PMID 17464883 DOI: 10.1080/10635150701313848  1
2007 Wheeler WC. Chromosomal character optimization. Molecular Phylogenetics and Evolution. 44: 1130-40. PMID 17363286 DOI: 10.1016/J.Ympev.2007.01.010  1
2007 Pellens R, D'Haese CA, Bellés X, Piulachs MD, Legendre F, Wheeler WC, Grandcolas P. The evolutionary transition from subsocial to eusocial behaviour in Dictyoptera: phylogenetic evidence for modification of the "shift-in-dependent-care" hypothesis with a new subsocial cockroach. Molecular Phylogenetics and Evolution. 43: 616-26. PMID 17291786 DOI: 10.1016/J.Ympev.2006.12.017  1
2007 Richter S, Olesen J, Wheeler WC. Phylogeny of Branchiopoda (Crustacea) based on a combined analysis of morphological data and six molecular loci Cladistics. 23: 301-336. DOI: 10.1111/J.1096-0031.2007.00148.X  1
2007 Giribet G, Wheeler WC. The case for sensitivity: A response to Grant and Kluge Cladistics. 23: 294-296. DOI: 10.1111/J.1096-0031.2007.00146.X  1
2007 Arango CP, Wheeler WC. Phylogeny of the sea spiders (Arthropoda, Pycnogonida) based on direct optimization of six loci and morphology Cladistics. 23: 255-293. DOI: 10.1111/J.1096-0031.2007.00143.X  1
2007 Wheeler WC. Alignment, dynamic homology, and optimization Parsimony, Phylogeny, and Genomics. DOI: 10.1093/acprof:oso/9780199297306.003.0005  1
2007 de Carvalho MR, Bockmann FA, Amorim DS, Brandão CRF, de Vivo M, de Figueiredo JL, Britski HA, de Pinna MCC, Menezes NA, Marques FPL, Papavero N, Cancello EM, Crisci JV, McEachran JD, Schelly RC, ... ... Wheeler WC, et al. Taxonomic impediment or impediment to taxonomy? A commentary on systematics and the cybertaxonomic-automation paradigm Evolutionary Biology. 34: 140-143. DOI: 10.1007/S11692-007-9011-6  1
2006 Vinh le S, Varón A, Wheeler WC. Pairwise alignment with rearrangements. Genome Informatics. International Conference On Genome Informatics. 17: 141-51. PMID 17503387  1
2006 Smith WL, Wheeler WC. Venom evolution widespread in fishes: a phylogenetic road map for the bioprospecting of piscine venoms. The Journal of Heredity. 97: 206-17. PMID 16740627 DOI: 10.1093/Jhered/Esj034  1
2006 Frost DR, Grant T, Faivovich J, Bain RH, Haas A, Haddad CFB, De Sá RO, Channing A, Wilkinson M, Donnellan SC, Raxworthy CJ, Campbell JA, Blotto BL, Moler P, Drewes RC, ... ... Wheeler WC, et al. The amphibian tree of life Bulletin of the American Museum of Natural History. 1-370. DOI: 10.1206/0003-0090(2006)297[0001:Tatol]2.0.Co;2  1
2006 Vinh LS, Varón A, Wheeler WC. Pairwise alignment with rearrangements. Genome Informatics. 17: 141-151. DOI: 10.11234/Gi1990.17.2_141  0.64
2006 Wheeler WC, Ramírez MJ, Aagesen L, Schulmeister S. Partition-free congruence analysis: Implications for sensitivity analysis Cladistics. 22: 256-263. DOI: 10.1111/J.1096-0031.2006.00107.X  1
2006 Wheeler WC. Dynamic homology and the likelihood criterion Cladistics. 22: 157-170. DOI: 10.1111/J.1096-0031.2006.00096.X  1
2006 Pickett KM, Carpenter JM, Wheeler WC. Systematics of Polistes (Hymenoptera: Vespidae), with a phylogenetic consideration of Hamilton's haplodiploidy hypothesis Annales Zoologici Fennici. 43: 390-406.  1
2006 Grant T, Frost DR, Caldwell JP, Gagliardo R, Haddad CFB, Kok PJR, Means DB, Noonan BP, Schargel WE, Wheeler WC. Phylogenetic systematics of dart-poison frogs and their relatives (Amphibia: Athesphatanura: Dendrobatidae) Bulletin of the American Museum of Natural History. 1-262.  1
2005 Faivovich J, Haddad CFB, Garcia PCA, Frost DR, Campbell JA, Wheeler WC. Systematic review of the frog family Hylidae, with special reference to Hylinae: Phylogenetic analysis and taxonomic revision Bulletin of the American Museum of Natural History. 1-227. DOI: 10.1206/0003-0090(2005)294[0001:Srotff]2.0.Co;2  1
2005 Pickett KM, Tolman GL, Wheeler WC, Wenzel JW. Parsimony overcomes statistical inconsistency with the addition of more data from the same gene Cladistics. 21: 438-445. DOI: 10.1111/J.1096-0031.2005.00076.X  1
2005 Prendini L, Wheeler WC. Scorpion higher phylogeny and classification, taxonomic anarchy, and standards for peer review in online publishing Cladistics. 21: 446-494. DOI: 10.1111/J.1096-0031.2005.00073.X  1
2005 Ogden TH, Whiting MF, Wheeler WC. Poor taxon sampling, poor character sampling, and non-repeatable analyses of a contrived dataset do not provide a more credible estimate of insect phylogeny: A reply to Kjer Cladistics. 21: 295-302. DOI: 10.1111/J.1096-0031.2005.00061.X  1
2005 Prendini L, Weygoldt P, Wheeler WC. Systematics of the Damon variegatus group of African whip spiders (Chelicerata: Amblypygi): Evidence from behaviour, morphology and DNA Organisms Diversity and Evolution. 5: 203-236. DOI: 10.1016/J.Ode.2004.12.004  1
2004 Faivovich J, García PC, Ananias F, Lanari L, Basso NG, Wheeler WC. A molecular perspective on the phylogeny of the Hyla pulchella species group (Anura, Hylidae). Molecular Phylogenetics and Evolution. 32: 938-50. PMID 15288068 DOI: 10.1016/J.Ympev.2004.03.008  1
2004 Smith WL, Wheeler WC. Polyphyly of the mail-cheeked fishes (Teleostei: Scorpaeniformes): evidence from mitochondrial and nuclear sequence data. Molecular Phylogenetics and Evolution. 32: 627-46. PMID 15223043 DOI: 10.1016/J.Ympev.2004.02.006  1
2004 Schulmeister S, Wheeler WC. Comparative and phylogenetic analysis of developmental sequences. Evolution & Development. 6: 50-7. PMID 15108818 DOI: 10.1111/J.1525-142X.2004.04005.X  1
2004 Giribet G, Edgecombe GD, Carpenter JM, D'Haese CA, Wheeler WC. Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects Organisms Diversity and Evolution. 4: 319-340. DOI: 10.1016/J.Ode.2004.05.001  1
2003 Wheeler WC. Search-based optimization. Cladistics : the International Journal of the Willi Hennig Society. 19: 348-55. PMID 14531408 DOI: 10.1016/S0748-3007(03)00052-5  1
2003 Wheeler WC. Implied alignment: a synapomorphy-based multiple-sequence alignment method and its use in cladogram search. Cladistics : the International Journal of the Willi Hennig Society. 19: 261-8. PMID 12901383 DOI: 10.1111/J.1096-0031.2003.Tb00369.X  1
2003 Wheeler WC. Iterative pass optimization of sequence data. Cladistics : the International Journal of the Willi Hennig Society. 19: 254-60. PMID 12901382 DOI: 10.1111/J.1096-0031.2003.Tb00368.X  1
2003 Norell MA, Wheeler WC. Missing entry replacement data analysis: A replacement approach to dealing with missing data in paleontological and total evidence data sets Journal of Vertebrate Paleontology. 23: 275-283. DOI: 10.1671/0272-4634(2003)023[0275:Merdaa]2.0.Co;2  1
2003 Prendini L, Crowe TM, Wheeler WC. Systematics and biogeography of the family Scorpionidae (Chelicerata: Scorpiones), with a discussion on phylogenetic methods Invertebrate Systematics. 17: 185-259. DOI: 10.1071/Is02016  1
2002 Giribet G, Edgecombe GD, Wheeler WC, Babbitt C. Phylogeny and systematic position of Opiliones: a combined analysis of chelicerate relationships using morphological and molecular data. Cladistics : the International Journal of the Willi Hennig Society. 18: 5-70. PMID 14552352 DOI: 10.1111/J.1096-0031.2002.Tb00140.X  1
2002 Giribet G, DeSalle R, Wheeler WC. 'Pluralism' and the aims of phylogenetic research. Exs. 141-6. PMID 11924492  1
2002 Janies DA, Wheeler WC. Theory and practice of parallel direct optimization. Exs. 115-23. PMID 11924490  1
2002 Giribet G, Wheeler WC, Muona J. DNA multiple sequence alignments. Exs. 107-14. PMID 11924489  1
2002 Giribet G, Wheeler W. On bivalve phylogeny: A high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data Invertebrate Biology. 121: 271-324. DOI: 10.1111/J.1744-7410.2002.Tb00132.X  1
2002 Schulmeister S, Wheeler WC, Carpenter JM. Simultaneous analysis of the basal lineages of Hymenoptera (Insecta) using sensitivity analysis Cladistics. 18: 455-484. DOI: 10.1111/J.1096-0031.2002.Tb00287.X  1
2002 Edgecombe GD, Giribet G, Wheeler WC. Phylogeny of Henicopidae (Chilopoda: Lithobiomorpha): A combined analysis of morphology and five molecular loci Systematic Entomology. 27: 31-64. DOI: 10.1046/J.0307-6970.2001.00163.X  1
2001 Janies DA, Wheeler WC. Efficiency of parallel direct optimization. Cladistics : the International Journal of the Willi Hennig Society. 17: S71-82. PMID 12240679 DOI: 10.1006/Clad.2000.0160  1
2001 Giribet G, Edgecombe GD, Wheeler WC. Arthropod phylogeny based on eight molecular loci and morphology Nature. 413: 157-161. PMID 11557979 DOI: 10.1038/35093097  1
2001 Wheeler WC, Whiting M, Wheeler QD, Carpenter JM. The phylogeny of the extant hexapod orders Cladistics. 17: 113-169. DOI: 10.1006/Clad.2000.0147  1
2000 Bang R, DeSalle R, Wheeler W. Transformationalism, taxism, and developmental biology in systematics. Systematic Biology. 49: 19-27. PMID 12116480 DOI: 10.1080/10635150050207366  1
2000 Giribet G, Distel DL, Polz M, Sterrer W, Wheeler WC. Triploblastic relationships with emphasis on the Acoelomates and the position of Gnathostomulida, Cycliophora, Plathelminthes, and Chaetognatha: A combined approach of 18S rDNA sequences and morphology Systematic Biology. 49: 539-562. PMID 12116426 DOI: 10.1080/10635159950127385  1
2000 Phillips A, Janies D, Wheeler W. Multiple sequence alignment in phylogenetic analysis. Molecular Phylogenetics and Evolution. 16: 317-30. PMID 10991785 DOI: 10.1006/Mpev.2000.0785  1
1999 Giribet G, Wheeler WC. The Position of Arthropods in the Animal Kingdom: Ecdysozoa, Islands, Trees, and the "Parsimony Ratchet" Molecular Phylogenetics and Evolution. 13: 619-623. PMID 10620418 DOI: 10.1006/Mpev.1999.0679  1
1999 Giribet G, Wheeler WC. On Gaps Molecular Phylogenetics and Evolution. 13: 132-143. PMID 10508546 DOI: 10.1006/mpev.1999.0643  1
1999 Carpenter JM, Wheeler WC. Towards simultaneous analysis of morphological and molecular data in Hymenoptera Zoologica Scripta. 28: 251-260. DOI: 10.1046/J.1463-6409.1999.00009.X  1
1998 Wheeler WC, Hayashi CY. The Phylogeny of the Extant Chelicerate Orders Cladistics. 14: 173-192. DOI: 10.1111/J.1096-0031.1998.Tb00331.X  1
1997 Whiting MF, Carpenter JC, Wheeler QD, Wheeler WC. The strepsiptera problem: Phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology Systematic Biology. 46: 1-68. PMID 11975347 DOI: 10.1093/Sysbio/46.1.1  1
1996 Vrana PB, Wheeler WC. Molecular evolution and phylogenetic utility of the Polyubiquitin locus in mammals and higher vertebrates Molecular Phylogenetics and Evolution. 6: 259-269. PMID 8899727 DOI: 10.1006/Mpev.1996.0075  1
1995 Wheeler WC, Gatesy J, DeSalle R. Elision: a method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites. Molecular Phylogenetics and Evolution. 4: 1-9. PMID 7620631 DOI: 10.1006/Mpev.1995.1001  1
1995 Wheeler WC. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data Systematic Biology. 44: 321-331. DOI: 10.1093/Sysbio/44.3.321  1
1994 Vrana PB, Milinkovitch MC, Powell JR, Wheeler WC. Higher Level Relationships of the Arctoid Carnivora Based on Sequence Data and "Total Evidence" Molecular Phylogenetics and Evolution. 3: 47-58. PMID 8025729 DOI: 10.1006/Mpev.1994.1006  1
1994 Wheeler WC. Sources of ambiguity in nucleic acid sequence alignment Exs. 69: 323-352. PMID 7994113  1
1994 Wheeler WC, Gladstein DS. MALIGN: A multiple sequence alignment program Journal of Heredity. 85: 417-418. DOI: 10.1093/oxfordjournals.jhered.a111492  1
1994 Whiting MF, Wheeler WC. Insect homeotic transformation Nature. 368: 696-696. DOI: 10.1038/368696A0  0.96
1994 Wheeler WC, Nixon K. A Novel Method for Economical Diagnosis of Cladograms under Sankoff Optimization Cladistics. 10: 207-213. DOI: 10.1006/Clad.1994.1012  1
1994 Whiting MF, Wheeler WC. Insect homeotic transformation [8] Nature. 368: 696.  1
1993 Dick M, Bridge DM, Wheeler WC, DeSalle R. Collection and storage of invertebrate samples. Methods in Enzymology. 224: 51-65. PMID 8264406 DOI: 10.1016/0076-6879(93)24005-F  1
1993 Gatesy J, DeSalle R, Wheeler W. Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Molecular Phylogenetics and Evolution. 2: 152-7. PMID 8025721 DOI: 10.1006/Mpev.1993.1015  1
1993 Wheeler WC, Cartwright P, Hayashi CY. Arthropod Phylogeny: a Combined Approach Cladistics. 9: 1-39. DOI: 10.1111/J.1096-0031.1993.Tb00207.X  1
1993 Wheeler WC, Cartwright P, Hayashi CY. Regular ArticleArthropod Phylogeny: a Combined Approach Cladistics. 9. DOI: 10.1006/Clad.1993.1001  0.92
1993 Wheeler WC, Fitch WM. The triangle inequality and character analysis [2] Molecular Biology and Evolution. 10: 707-714.  1
1992 DeSalle R, Gatesy J, Wheeler W, Grimaldi D. DNA sequences from a fossil termite in Oligo-Miocene amber and their phylogenetic implications. Science (New York, N.Y.). 257: 1933-6. PMID 1411508 DOI: 10.1126/Science.1411508  1
1989 Wheeler WC. The systematics of insect ribosomal DNA The Hierarchy of Life. Molecules and Morphology in Phylogenetic Analysis: Proceedings From Nobel Symposium 70. Ics824. 307-321.  1
1988 Wheeler WC, Honeycutt RL. Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications. Molecular Biology and Evolution. 5: 90-6. PMID 3357414 DOI: 10.1093/Oxfordjournals.Molbev.A040480  1
1987 Harrison RG, Rand DM, Wheeler WC. Mitochondrial DNA variation in field crickets across a narrow hybrid zone Molecular Biology and Evolution. 4: 144-158. DOI: 10.1093/Oxfordjournals.Molbev.A040436  1
1985 Harrison RG, Rand DM, Wheeler WC. Mitochondrial DNA size variation within individual crickets Science. 228: 1446-1448.  1
Show low-probability matches.