Peter Vize, Ph.D. - Publications

Affiliations: 
Harvard University, Cambridge, MA, United States 
Area:
Developmental Biology, Marine Biology

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Telmer CA, Karimi K, Chess MM, Agalakov S, Arshinoff BI, Lotay V, Wang DZ, Chu S, Pells TJ, Vize PD, Hinman VF, Ettensohn CA. Echinobase: a resource to support the echinoderm research community. Genetics. PMID 38262680 DOI: 10.1093/genetics/iyae002  0.341
2023 Fisher M, James-Zorn C, Ponferrada V, Bell AJ, Sundararaj N, Segerdell E, Chaturvedi P, Bayyari N, Chu S, Pells T, Lotay V, Agalakov S, Wang DZ, Arshinoff BI, Foley S, ... ... Vize PD, et al. Xenbase: Key Features and Resources of the Xenopus Model Organism Knowledgebase. Genetics. PMID 36755307 DOI: 10.1093/genetics/iyad018  0.618
2022 Zahn N, James-Zorn C, Ponferrada VG, Adams DS, Grzymkowski J, Buchholz DR, Nascone-Yoder NM, Horb M, Moody SA, Vize PD, Zorn AM. Normal Table of Xenopus development: a new graphical resource. Development (Cambridge, England). 149. PMID 35833709 DOI: 10.1242/dev.200356  0.594
2022 Fisher ME, Segerdell E, Matentzoglu N, Nenni MJ, Fortriede JD, Chu S, Pells TJ, Osumi-Sutherland D, Chaturvedi P, James-Zorn C, Sundararaj N, Lotay VS, Ponferrada V, Wang DZ, Kim E, ... ... Vize PD, et al. The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. Bmc Bioinformatics. 23: 99. PMID 35317743 DOI: 10.1186/s12859-022-04636-8  0.532
2019 Fortriede JD, Pells TJ, Chu S, Chaturvedi P, Wang D, Fisher ME, James-Zorn C, Wang Y, Nenni MJ, Burns KA, Lotay VS, Ponferrada VG, Karimi K, Zorn AM, Vize PD. Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. Nucleic Acids Research. PMID 31733057 DOI: 10.1093/nar/gkz933  0.626
2019 Wuitchik DM, Wang D, Pells TJ, Karimi K, Ward S, Vize PD. Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef-building coral. Molecular Ecology. PMID 31294494 DOI: 10.1111/Mec.15173  0.734
2019 Nenni MJ, Fisher ME, James-Zorn C, Pells TJ, Ponferrada V, Chu S, Fortriede JD, Burns KA, Wang Y, Lotay VS, Wang DZ, Segerdell E, Chaturvedi P, Karimi K, Vize PD, et al. Xenbase: Facilitating the Use of to Model Human Disease. Frontiers in Physiology. 10: 154. PMID 30863320 DOI: 10.3389/fphys.2019.00154  0.541
2018 Oldach MJ, Vize PD. De novo assembly and annotation of the Acropora gemmifera transcriptome. Marine Genomics. 40: 9-12. PMID 32420879 DOI: 10.1016/j.margen.2017.12.007  0.789
2018 Karimi K, Wuitchik DM, Oldach MJ, Vize PD. Distinguishing Species Using GC Contents in Mixed DNA or RNA Sequences. Evolutionary Bioinformatics Online. 14: 1176934318788866. PMID 30038485 DOI: 10.1177/1176934318788866  0.678
2018 James-Zorn C, Ponferrada V, Fisher ME, Burns K, Fortriede J, Segerdell E, Karimi K, Lotay V, Wang DZ, Chu S, Pells T, Wang Y, Vize PD, Zorn A. Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database. Methods in Molecular Biology (Clifton, N.J.). 1757: 251-305. PMID 29761462 DOI: 10.1007/978-1-4939-7737-6_10  0.647
2017 Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD. Xenbase: a genomic, epigenomic and transcriptomic model organism database. Nucleic Acids Research. PMID 29059324 DOI: 10.1093/nar/gkx936  0.593
2017 Oldach MJ, Workentine M, Matz MV, Fan TY, Vize PD. Transcriptome dynamics over a lunar month in a broadcast spawning Acroporid coral. Molecular Ecology. PMID 28141890 DOI: 10.1111/Mec.14043  0.765
2016 Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, ... ... Vize PD, et al. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 538: 336-343. PMID 27762356 DOI: 10.1038/Nature19840  0.759
2016 Brady AK, Willis BL, Harder LD, Vize PD. Lunar Phase Modulates Circadian Gene Expression Cycles in the Broadcast Spawning Coral Acropora millepora. The Biological Bulletin. 230: 130-42. PMID 27132135 DOI: 10.1086/Bblv230N2P130  0.635
2016 Vize PD, Zorn AM. Xenopus genomic data and browser resources. Developmental Biology. PMID 27039265 DOI: 10.1016/j.ydbio.2016.03.030  0.59
2015 James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Karpinka JB, Karimi K, Zorn AM, Vize PD. Xenbase; core features, data acquisition and data processing. Genesis (New York, N.Y. : 2000). PMID 26150211 DOI: 10.1002/dvg.22873  0.591
2015 Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Vize PD, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033  0.558
2015 Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD. Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes. Nucleic Acids Research. 43: D756-63. PMID 25313157 DOI: 10.1093/nar/gku956  0.605
2014 Reichman JR, Vize PD. Separate introns gained within short and long soluble peridinin-chlorophyll a-protein genes during radiation of Symbiodinium (Dinophyceae) clade A and B lineages. Plos One. 9: e110608. PMID 25330037 DOI: 10.1371/Journal.Pone.0110608  0.73
2013 Segerdell E, Ponferrada VG, James-Zorn C, Burns KA, Fortriede JD, Dahdul WM, Vize PD, Zorn AM. Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. Journal of Biomedical Semantics. 4: 31. PMID 24139024 DOI: 10.1186/2041-1480-4-31  0.597
2013 Davies SW, Matz MV, Vize PD. Ecological complexity of coral recruitment processes: effects of invertebrate herbivores on coral recruitment and growth depends upon substratum properties and coral species. Plos One. 8: e72830. PMID 24039807 DOI: 10.1371/Journal.Pone.0072830  0.724
2013 Bowes JB, Snyder KA, James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Bhattacharyya B, Zorn AM, Vize PD. The Xenbase literature curation process. Database : the Journal of Biological Databases and Curation. 2013: bas046. PMID 23303299 DOI: 10.1093/database/bas046  0.591
2013 James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Fortriede J, Bowes JB, Zorn AM, Vize PD. Xenbase: expansion and updates of the Xenopus model organism database. Nucleic Acids Research. 41: D865-70. PMID 23125366 DOI: 10.1093/nar/gks1025  0.649
2012 Daniel Hilton J, Brady AK, Spaho SA, Vize PD. Photoreception and signal transduction in corals: Proteomic and behavioral evidence for cytoplasmic calcium as a mediator of light responsivity Biological Bulletin. 223: 291-299. PMID 23264475 DOI: 10.1086/Bblv223N3P291  0.554
2011 Brady AK, Snyder KA, Vize PD. Circadian cycles of gene expression in the coral, Acropora millepora. Plos One. 6: e25072. PMID 21949855 DOI: 10.1371/journal.pone.0025072  0.579
2011 Mccoy KE, Zhou X, Vize PD. Non-canonical wnt signals antagonize and canonical wnt signals promote cell proliferation in early kidney development Developmental Dynamics. 240: 1558-1566. PMID 21465621 DOI: 10.1002/dvdy.22626  0.487
2010 Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, ... ... Vize PD, et al. The genome of the Western clawed frog Xenopus tropicalis. Science (New York, N.Y.). 328: 633-6. PMID 20431018 DOI: 10.1126/Science.1183670  0.691
2010 Bowes JB, Snyder KA, Segerdell E, Jarabek CJ, Azam K, Zorn AM, Vize PD. Xenbase: gene expression and improved integration. Nucleic Acids Research. 38: D607-12. PMID 19884130 DOI: 10.1093/nar/gkp953  0.616
2010 Brady AK, Hilton JD, Vize PD. Erratum to: Coral spawn timing is a direct response to solar light cycles and is not an entrained circadian response Coral Reefs. 29: 535-535. DOI: 10.1007/s00338-010-0589-2  0.538
2009 Vize PD, McCoy KE, Zhou X. Multichannel wholemount fluorescent and fluorescent/chromogenic in situ hybridization in Xenopus embryos. Nature Protocols. 4: 975-983. PMID 19498377 DOI: 10.1038/nprot.2009.69  0.572
2009 Brady AK, Hilton JD, Vize PD. Coral spawn timing is a direct response to solar light cycles and is not an entrained circadian response Coral Reefs. 28: 677-680. DOI: 10.1007/s00338-009-0498-4  0.538
2008 McCoy KE, Zhou X, Vize PD. Collectrin/tmem27 is expressed at high levels in all segments of the developing Xenopus pronephric nephron and in the Wolffian duct Gene Expression Patterns. 8: 271-274. PMID 18226983 DOI: 10.1016/j.gep.2007.12.002  0.521
2008 Bowes JB, Snyder KA, Segerdell E, Gibb R, Jarabek C, Noumen E, Pollet N, Vize PD. Xenbase: a Xenopus biology and genomics resource. Nucleic Acids Research. 36: D761-7. PMID 17984085 DOI: 10.1093/Nar/Gkm826  0.334
2005 Vize PD, Embesi JA, Nickell M, Brown DP, Hagman DK. Tight temporal consistency of coral mass spawning at the Flower Garden Banks, Gulf of Mexico, from 1997-2003 Gulf of Mexico Science. 23: 107-114.  0.63
2003 Reichman JR, Wilcox TP, Vize PD. PCP gene family in Symbiodinium from Hippopus hippopus: low levels of concerted evolution, isoform diversity, and spectral tuning of chromophores. Molecular Biology and Evolution. 20: 2143-54. PMID 12949129 DOI: 10.1093/Molbev/Msg233  0.771
2003 Vize PD, Carroll TJ, Wallingford JB. Induction, Development, and Physiology of the Pronephric Tubules The Kidney: From Normal Development to Congenital Disease. 19-50. DOI: 10.1016/B978-012722441-1/50005-1  0.496
2001 Vize PD. Online analysis of development Bioessays. 23: 549-554. PMID 11385635 DOI: 10.1002/bies.1075  0.338
2001 Lu P, Barad M, Vize PD. Xenopus p63 expression in early ectoderm and neurectoderm. Mechanisms of Development. 102: 275-8. PMID 11287210 DOI: 10.1016/S0925-4773(01)00315-X  0.719
1999 Matsumura I, Wallingford JB, Surana NK, Vize PD, Ellington AD. Directed evolution of the surface chemistry of the reporter enzyme β- glucuronidase Nature Biotechnology. 17: 696-701. PMID 10404164 DOI: 10.1038/10910  0.492
1999 Carroll TJ, Wallingford JB, Vize PD. Dynamic patterns of gene expression in the developing pronephros of Xenopus laevis Developmental Genetics. 24: 199-207. PMID 10322628 DOI: 10.1002/(Sici)1520-6408(1999)24:3/4<199::Aid-Dvg3>3.0.Co;2-D  0.577
1999 Carroll T, Wallingford J, Seufert D, Vize PD. Molecular regulation of pronephric development. Current Topics in Developmental Biology. 44: 67-100. PMID 9891877 DOI: 10.1016/S0070-2153(08)60467-6  0.676
1998 Wallingford JB, Carroll TJ, Vize PD. Precocious expression of the Wilms' tumor gene xWT1 inhibits embryonic kidney development in Xenopus laevis Developmental Biology. 202: 103-112. PMID 9758706 DOI: 10.1006/Dbio.1998.8989  0.536
1998 Hagman DK, Gittings SR, Vize PD. Fertilization in broadcast-spawning corals of the Flower Garden Banks national marine sanctuary Gulf of Mexico Science. 16: 180-187.  0.643
1997 Wallingford JB, Seufert DW, Virta VC, Vize PD. p53 activity is essential for normal development in Xenopus. Current Biology : Cb. 7: 747-57. PMID 9368757 DOI: 10.1016/S0960-9822(06)00333-2  0.492
1997 Vize PD, Seufert DW, Carroll TJ, Wallingford JB. Model systems for the study of kidney development: Use of the pronephros in the analysis of organ induction and patterning Developmental Biology. 188: 189-204. PMID 9268568 DOI: 10.1006/Dbio.1997.8629  0.525
1996 Vize PD. DNA sequences mediating the transcriptional response of the Mix.2 homeobox gene to mesoderm induction Developmental Biology. 177: 226-231. PMID 8660890 DOI: 10.1006/dbio.1996.0158  0.305
1994 Vize PD, Thomsen GH. Vg1 and regional specification in vertebrates: a new role for an old molecule. Trends in Genetics : Tig. 10: 371-6. PMID 7985242 DOI: 10.1016/0168-9525(94)90134-1  0.641
1991 Vize PD, Melton DA, Hemmati-Brivanlou A, Harland RM. Assays for gene function in developing Xenopus embryos. Methods in Cell Biology. 36: 367-87. PMID 1811145 DOI: 10.1016/S0091-679X(08)60288-5  0.643
1988 Vize PD, Michalska AE, Ashman R, Lloyd B, Stone BA, Quinn P, Wells JR, Seamark RF. Introduction of a porcine growth hormone fusion gene into transgenic pigs promotes growth. Journal of Cell Science. 90: 295-300. PMID 3246521  0.714
1987 Vize PD, Wells JRE. Isolation and characterization of the porcine growth hormone gene Gene. 55: 339-344. PMID 3666458 DOI: 10.1016/0378-1119(87)90294-0  0.73
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