| Year |
Citation |
Score |
| 2020 |
Yokoyama S, Jia H. Origin and adaptation of green-sensitive (RH2) pigments in vertebrates. Febs Open Bio. PMID 32189477 DOI: 10.1002/2211-5463.12843 |
0.389 |
|
| 2016 |
Yokoyama S, Tada T, Liu Y, Faggionato D, Altun A. A simple method for studying the molecular mechanisms of ultraviolet and violet reception in vertebrates. Bmc Evolutionary Biology. 16: 64. PMID 27001075 DOI: 10.1186/S12862-016-0637-9 |
0.373 |
|
| 2015 |
Yokoyama S, Altun A, Jia H, Yang H, Koyama T, Faggionato D, Liu Y, Starmer WT. Adaptive evolutionary paths from UV reception to sensing violet light by epistatic interactions. Science Advances. 1: e1500162. PMID 26601250 DOI: 10.1126/Sciadv.1500162 |
0.381 |
|
| 2015 |
Gühmann M, Jia H, Randel N, Verasztó C, Bezares-Calderón LA, Michiels NK, Yokoyama S, Jékely G. Spectral Tuning of Phototaxis by a Go-Opsin in the Rhabdomeric Eyes of Platynereis. Current Biology : Cb. 25: 2265-71. PMID 26255845 DOI: 10.1016/J.Cub.2015.07.017 |
0.339 |
|
| 2014 |
Yokoyama S, Xing J, Liu Y, Faggionato D, Altun A, Starmer WT. Epistatic adaptive evolution of human color vision. Plos Genetics. 10: e1004884. PMID 25522367 DOI: 10.1371/Journal.Pgen.1004884 |
0.403 |
|
| 2014 |
Yokoyama S, Starmer WT, Liu Y, Tada T, Britt L. Extraordinarily low evolutionary rates of short wavelength-sensitive opsin pseudogenes. Gene. 534: 93-9. PMID 24125953 DOI: 10.1016/J.Gene.2013.09.114 |
0.361 |
|
| 2013 |
Yokoyama S. Synthetic biology of phenotypic adaptation in vertebrates: the next frontier. Molecular Biology and Evolution. 30: 1495-9. PMID 23603936 DOI: 10.1093/Molbev/Mst075 |
0.316 |
|
| 2012 |
Yokoyama S. Synthesis of Experimental Molecular Biology and Evolutionary Biology: An Example from the World of Vision. Bioscience. 62: 939-948. PMID 23483186 DOI: 10.1525/Bio.2012.62.11.3 |
0.322 |
|
| 2012 |
Schnitzler CE, Pang K, Powers ML, Reitzel AM, Ryan JF, Simmons D, Tada T, Park M, Gupta J, Brooks SY, Blakesley RW, Yokoyama S, Haddock SH, Martindale MQ, Baxevanis AD. Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes. Bmc Biology. 10: 107. PMID 23259493 DOI: 10.1186/1741-7007-10-107 |
0.338 |
|
| 2011 |
Sekharan S, Yokoyama S, Morokuma K. Quantum mechanical/molecular mechanical structure, enantioselectivity, and spectroscopy of hydroxyretinals and insights into the evolution of color vision in small white butterflies. The Journal of Physical Chemistry. B. 115: 15380-8. PMID 22087641 DOI: 10.1021/Jp208107R |
0.338 |
|
| 2011 |
Altun A, Morokuma K, Yokoyama S. H-bond network around retinal regulates the evolution of ultraviolet and violet vision. Acs Chemical Biology. 6: 775-80. PMID 21650174 DOI: 10.1021/Cb200100F |
0.363 |
|
| 2011 |
Yokoyama S, Altun A, DeNardo DF. Molecular convergence of infrared vision in snakes. Molecular Biology and Evolution. 28: 45-8. PMID 20937734 DOI: 10.1093/Molbev/Msq267 |
0.306 |
|
| 2010 |
Watanabe HC, Mori Y, Tada T, Yokoyama S, Yamato T. Molecular mechanism of long-range synergetic color tuning between multiple amino acid residues in conger rhodopsin. Biophysics. 6: 67-68. PMID 21297892 DOI: 10.2142/Biophysics.6.67 |
0.371 |
|
| 2010 |
Yokoyama S, Tada T. Evolutionary dynamics of rhodopsin type 2 opsins in vertebrates. Molecular Biology and Evolution. 27: 133-41. PMID 19759234 DOI: 10.1093/Molbev/Msp217 |
0.342 |
|
| 2010 |
Yokoyama S, Tada T. The evolution of ultraviolet vision in vertebrates Evolution of Nervous Systems. 2: 349-353. DOI: 10.1016/B0-12-370878-8/00141-5 |
0.368 |
|
| 2009 |
Tada T, Altun A, Yokoyama S. Evolutionary replacement of UV vision by violet vision in fish. Proceedings of the National Academy of Sciences of the United States of America. 106: 17457-62. PMID 19805066 DOI: 10.1073/Pnas.0903839106 |
0.377 |
|
| 2009 |
Altun A, Yokoyama S, Morokuma K. Color tuning in short wavelength-sensitive human and mouse visual pigments: ab initio quantum mechanics/molecular mechanics studies. The Journal of Physical Chemistry. A. 113: 11685-92. PMID 19630373 DOI: 10.1021/Jp902754P |
0.327 |
|
| 2008 |
Yokoyama S, Tada T, Zhang H, Britt L. Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates. Proceedings of the National Academy of Sciences of the United States of America. 105: 13480-5. PMID 18768804 DOI: 10.1073/Pnas.0802426105 |
0.388 |
|
| 2008 |
Yokoyama S, Yang H, Starmer WT. Molecular basis of spectral tuning in the red- and green-sensitive (M/LWS) pigments in vertebrates. Genetics. 179: 2037-43. PMID 18660543 DOI: 10.1534/Genetics.108.090449 |
0.381 |
|
| 2008 |
Yokoyama S. Evolution of dim-light and color vision pigments. Annual Review of Genomics and Human Genetics. 9: 259-82. PMID 18544031 DOI: 10.1146/Annurev.Genom.9.081307.164228 |
0.384 |
|
| 2008 |
Altun A, Yokoyama S, Morokuma K. Spectral tuning in visual pigments: an ONIOM(QM:MM) study on bovine rhodopsin and its mutants. The Journal of Physical Chemistry. B. 112: 6814-27. PMID 18473437 DOI: 10.1021/Jp709730B |
0.3 |
|
| 2008 |
Altun A, Yokoyama S, Morokuma K. Quantum mechanical/molecular mechanical studies on spectral tuning mechanisms of visual pigments and other photoactive proteins. Photochemistry and Photobiology. 84: 845-54. PMID 18331400 DOI: 10.1111/J.1751-1097.2008.00308.X |
0.308 |
|
| 2007 |
Takenaka N, Yokoyama S. Mechanisms of spectral tuning in the RH2 pigments of Tokay gecko and American chameleon. Gene. 399: 26-32. PMID 17590287 DOI: 10.1016/J.Gene.2007.04.036 |
0.37 |
|
| 2007 |
Yokoyama S, Takenaka N, Blow N. A novel spectral tuning in the short wavelength-sensitive (SWS1 and SWS2) pigments of bluefin killifish (Lucania goodei). Gene. 396: 196-202. PMID 17498892 DOI: 10.1016/J.Gene.2007.03.019 |
0.387 |
|
| 2007 |
Yokoyama S, Tada T, Yamato T. Modulation of the absorption maximum of rhodopsin by amino acids in the C-terminus. Photochemistry and Photobiology. 83: 236-41. PMID 16922606 DOI: 10.1562/2006-06-19-Ra-939 |
0.344 |
|
| 2006 |
Yokoyama S, Starmer WT, Takahashi Y, Tada T. Tertiary structure and spectral tuning of UV and violet pigments in vertebrates. Gene. 365: 95-103. PMID 16343816 DOI: 10.1016/J.Gene.2005.09.028 |
0.387 |
|
| 2005 |
Takahashi Y, Yokoyama S. Genetic basis of spectral tuning in the violet-sensitive visual pigment of African clawed frog, Xenopus laevis. Genetics. 171: 1153-60. PMID 16079229 DOI: 10.1534/Genetics.105.045849 |
0.396 |
|
| 2005 |
Yokoyama S, Takenaka N, Agnew DW, Shoshani J. Elephants and human color-blind deuteranopes have identical sets of visual pigments. Genetics. 170: 335-44. PMID 15781694 DOI: 10.1534/Genetics.104.039511 |
0.345 |
|
| 2005 |
Yokoyama S. Molecules, biodiversity, and adaptive evolution Journal of Heredity. 96: 169-170. PMID 15695550 DOI: 10.1093/Jhered/Esi034 |
0.339 |
|
| 2005 |
Yokoyama S, Takenaka N. Statistical and molecular analyses of evolutionary significance of red-green color vision and color blindness in vertebrates. Molecular Biology and Evolution. 22: 968-75. PMID 15647522 DOI: 10.1093/Molbev/Msi080 |
0.398 |
|
| 2004 |
Yokoyama S, Takenaka N. The molecular basis of adaptive evolution of squirrelfish rhodopsins. Molecular Biology and Evolution. 21: 2071-8. PMID 15269277 DOI: 10.1093/Molbev/Msh217 |
0.349 |
|
| 2004 |
Hiramatsu C, Radlwimmer FB, Yokoyama S, Kawamura S. Mutagenesis and reconstitution of middle-to-long-wave-sensitive visual pigments of New World monkeys for testing the tuning effect of residues at sites 229 and 233. Vision Research. 44: 2225-31. PMID 15208009 DOI: 10.1016/J.Visres.2004.04.008 |
0.339 |
|
| 2003 |
Deeb SS, Wakefield MJ, Tada T, Marotte L, Yokoyama S, Marshall Graves JA. The cone visual pigments of an Australian marsupial, the tammar wallaby (Macropus eugenii): sequence, spectral tuning, and evolution. Molecular Biology and Evolution. 20: 1642-9. PMID 12885969 DOI: 10.1093/Molbev/Msg181 |
0.406 |
|
| 2003 |
Shi Y, Yokoyama S. Molecular analysis of the evolutionary significance of ultraviolet vision in vertebrates. Proceedings of the National Academy of Sciences of the United States of America. 100: 8308-13. PMID 12824471 DOI: 10.1073/Pnas.1532535100 |
0.4 |
|
| 2003 |
Yokoyama S, Tada T. The spectral tuning in the short wavelength-sensitive type 2 pigments. Gene. 306: 91-8. PMID 12657470 DOI: 10.1016/S0378-1119(03)00424-4 |
0.381 |
|
| 2002 |
Yokoyama S. Molecular evolution of color vision in vertebrates. Gene. 300: 69-78. PMID 12468088 DOI: 10.1016/S0378-1119(02)00845-4 |
0.374 |
|
| 2002 |
Yokoyama S. Evaluating adaptive evolution. Nature Genetics. 30: 350-1. PMID 11925556 DOI: 10.1038/Ng0402-350 |
0.34 |
|
| 2001 |
Yokoyama S, Blow NS. Molecular evolution of the cone visual pigments in the pure rod-retina of the nocturnal gecko, Gekko gekko. Gene. 276: 117-25. PMID 11591478 DOI: 10.1016/S0378-1119(01)00643-6 |
0.424 |
|
| 2001 |
Shi Y, Radlwimmer FB, Yokoyama S. Molecular genetics and the evolution of ultraviolet vision in vertebrates Proceedings of the National Academy of Sciences of the United States of America. 98: 11731-11736. PMID 11573008 DOI: 10.1073/Pnas.201257398 |
0.373 |
|
| 2001 |
Yokoyama S, Bernhard Radlwimmer F. The molecular genetics and evolution of red and green color vision in vertebrates Genetics. 158: 1697-1710. PMID 11545071 |
0.307 |
|
| 2001 |
Kawamura S, Hirai M, Takenaka O, Radlwimmer FB, Yokoyama S. Genomic and spectral analyses of long to middle wavelength-sensitive visual pigments of common marmoset (Callithrix jacchus) Gene. 269: 45-51. PMID 11376936 DOI: 10.1016/S0378-1119(01)00454-1 |
0.358 |
|
| 2000 |
Yokoyama S, Tada T. Adaptive evolution of the African and Indonesian coelacanths to deep-sea environments Gene. 261: 35-42. PMID 11164035 DOI: 10.1016/S0378-1119(00)00474-1 |
0.38 |
|
| 2000 |
Yokoyama S, Blow NS, Radlwimmer FB. Molecular evolution of color vision of zebra finch. Gene. 259: 17-24. PMID 11163957 DOI: 10.1016/S0378-1119(00)00435-2 |
0.386 |
|
| 2000 |
Yokoyama S, Shi Y. Genetics and evolution of ultraviolet vision in vertebrates Febs Letters. 486: 167-172. PMID 11113460 DOI: 10.1016/S0014-5793(00)02269-9 |
0.4 |
|
| 2000 |
Yokoyama S, Radlwimmer FB, Blow NS. Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change. Proceedings of the National Academy of Sciences of the United States of America. 97: 7366-71. PMID 10861005 DOI: 10.1073/Pnas.97.13.7366 |
0.378 |
|
| 2000 |
Yokoyama S. Color vision of the coelacanth (Latimeria chalumnae) and adaptive evolution of rhodopsin (RH1) and rhodopsin-like (RH2) pigments Journal of Heredity. 91: 215-220. PMID 10833047 DOI: 10.1093/Jhered/91.3.215 |
0.38 |
|
| 2000 |
Yokoyama S. Molecular evolution of vertebrate visual pigments Progress in Retinal and Eye Research. 19: 385-419. PMID 10785616 DOI: 10.1016/S1350-9462(00)00002-1 |
0.424 |
|
| 2000 |
Yokoyama S. Phylogenetic analysis and experimental approaches to study color vision in vertebrates Methods in Enzymology. 315: 312-325. PMID 10736710 DOI: 10.1016/S0076-6879(00)15851-3 |
0.394 |
|
| 1999 |
Yokoyama S. Molecular bases of color vision in vertebrates Genes and Genetic Systems. 74: 189-199. PMID 10734600 DOI: 10.1266/Ggs.74.189 |
0.406 |
|
| 1999 |
Yokoyama S, Zhang H, Radlwimmer FB, Blow NS. Adaptive evolution of color vision of the Comoran coelacanth (Latimeria chalumnae). Proceedings of the National Academy of Sciences of the United States of America. 96: 6279-84. PMID 10339578 DOI: 10.1073/Pnas.96.11.6279 |
0.373 |
|
| 1998 |
Radlwimmer FB, Yokoyama S. Genetic analyses of the green visual pigments of rabbit (Oryctolagus cuniculus) and rat (Rattus norvegicus) Gene. 218: 103-109. PMID 9751808 DOI: 10.1016/S0378-1119(98)00359-X |
0.374 |
|
| 1998 |
Yokoyama S, Bernhard Radlwimmer F. The 'five-sites' rule and the evolution of red and green color vision in mammals Molecular Biology and Evolution. 15: 560-567. PMID 9580985 DOI: 10.1093/Oxfordjournals.Molbev.A025956 |
0.383 |
|
| 1998 |
Yokoyama S, Radlwimmer FB, Kawamura S. Regeneration of ultraviolet pigments of vertebrates Febs Letters. 423: 155-158. PMID 9512349 DOI: 10.1016/S0014-5793(98)00086-6 |
0.332 |
|
| 1998 |
Kawamura S, Yokoyama S. Functional characterization of visual and nonvisual pigments of American chameleon (Anolis carolinensis) Vision Research. 38: 37-44. PMID 9474373 DOI: 10.1016/S0042-6989(97)00160-0 |
0.39 |
|
| 1997 |
Yokoyama S. Molecular genetic basis of adaptive selection: Examples from color vision in vertebrates Annual Review of Genetics. 31: 315-336. PMID 9442898 DOI: 10.1146/Annurev.Genet.31.1.315 |
0.402 |
|
| 1997 |
Radlwimmer FB, Yokoyama S. Cloning and expression of the red visual pigment gene of goat (Capra hircus) Gene. 198: 211-215. PMID 9370283 DOI: 10.1016/S0378-1119(97)00316-8 |
0.388 |
|
| 1997 |
Kawamura S, Yokoyama S. Expression of visual and nonvisual opsins in American chameleon Vision Research. 37: 1867-1871. PMID 9274772 DOI: 10.1016/S0042-6989(96)00309-4 |
0.345 |
|
| 1997 |
Zhang H, Yokoyama S. Molecular evolution of the rhodopsin gene of marine lamprey, Petromyzon marinus Gene. 191: 1-6. PMID 9210581 DOI: 10.1016/S0378-1119(96)00864-5 |
0.382 |
|
| 1997 |
Nei M, Zhang J, Yokoyama S. Color vision of ancestral organisms of higher primates. Molecular Biology and Evolution. 14: 611-8. PMID 9190062 DOI: 10.1093/Oxfordjournals.Molbev.A025800 |
0.397 |
|
| 1996 |
Yokoyama S. Molecular evolution of retinal and nonretinal opsins Genes to Cells. 1: 787-794. PMID 9077433 DOI: 10.1046/J.1365-2443.1996.D01-273.X |
0.371 |
|
| 1996 |
Kawamura S, Yokoyama S. Phylogenetic relationships among short wavelength-sensitive opsins of American chameleon (Anolis carolinensis) and other vertebrates Vision Research. 36: 2797-2804. PMID 8917783 DOI: 10.1016/0042-6989(96)00034-X |
0.354 |
|
| 1996 |
Yokoyama S, Yokoyama R. Adaptive evolution of photoreceptors and visual pigments in vertebrates Annual Review of Ecology and Systematics. 27: 543-567. DOI: 10.1146/Annurev.Ecolsys.27.1.543 |
0.43 |
|
| 1995 |
Yokoyama S. Amino acid replacements and wavelength absorption of visual pigments in vertebrates Molecular Biology and Evolution. 12: 53-61. PMID 7877496 DOI: 10.1093/Oxfordjournals.Molbev.A040190 |
0.391 |
|
| 1995 |
Yokoyama R, Knox BE, Yokoyama S. Rhodopsin from the fish, Astyanax: Role of tyrosine 261 in the red shift Investigative Ophthalmology and Visual Science. 36: 939-945. PMID 7706043 DOI: 10.15781/T2Gm8258K |
0.367 |
|
| 1995 |
Kawamura S, Yokoyama S. Paralogous origin of the rhodopsinlike opsin genes in lizards Journal of Molecular Evolution. 40: 594-600. PMID 7643409 DOI: 10.1007/Bf00160506 |
0.356 |
|
| 1994 |
Yokoyama S, Matsuo Y, Ramsbotham R, Yokoyama R. Molecular characterization of a class IV human alcohol dehydrogenase gene (ADH7) Febs Letters. 351: 411-415. PMID 8082805 DOI: 10.1016/0014-5793(94)00895-7 |
0.301 |
|
| 1994 |
Kawamura S, Yokoyama S. Cloning of the rhodopsin-encoding gene from the rod-less lizard Anolis carolinensis Gene. 149: 267-270. PMID 7959000 DOI: 10.1016/0378-1119(94)90159-7 |
0.334 |
|
| 1994 |
Register EA, Yokoyama R, Yokoyama S. Multiple origins of the green-sensitive opsin genes in fish Journal of Molecular Evolution. 39: 268-273. PMID 7932788 DOI: 10.1007/Bf00160150 |
0.344 |
|
| 1993 |
Kawamura S, Yokoyama S. Molecular characterization of the red visual pigment gene of the American chameleon (Anolis carolinensis) Febs Letters. 323: 247-251. PMID 8500618 DOI: 10.1016/0014-5793(93)81350-9 |
0.397 |
|
| 1993 |
Yokoyama S, Starmer WT, Yokoyama R. Paralogous origin of the red- and green-sensitive visual pigment genes in vertebrates Molecular Biology and Evolution. 10: 527-538. PMID 8336542 DOI: 10.1093/Oxfordjournals.Molbev.A040024 |
0.395 |
|
| 1993 |
Yokoyama R, Yokoyama S. Molecular characterization of a blue visual pigment gene in the fish Astyanax fasciatus Febs Letters. 334: 27-31. PMID 8224220 DOI: 10.1016/0014-5793(93)81673-N |
0.38 |
|
| 1992 |
Yokoyama S, Matsuo Y, Rajasekharam S, Yokoyama R. Molecular structure of the human alcohol dehydrogenase 3 gene Japanese Journal of Genetics. 67: 167-171. PMID 1524834 DOI: 10.1266/Ggs.67.167 |
0.324 |
|
| 1990 |
Yokoyama R, Yokoyama S. Isolation, DNA sequence and evolution of a color visual pigment gene of the blind cave fish Astyanax fasc1atus Vision Research. 30: 807-816. PMID 2385921 DOI: 10.1016/0042-6989(90)90049-Q |
0.385 |
|
| 1990 |
Yokoyama S, Yokoyama R, Kinlaw CS, Harry DE. Molecular evolution of the zinc-containing long-chain alcohol dehydrogenase genes Molecular Biology and Evolution. 7: 143-154. PMID 2319942 DOI: 10.1093/Oxfordjournals.Molbev.A040593 |
0.324 |
|
| 1990 |
Yokoyama R, Yokoyama S. Convergent evolution of the red- and green-like visual pigment genes in fish, Astyanax fasciatus, and human Proceedings of the National Academy of Sciences of the United States of America. 87: 9315-9318. PMID 2123554 DOI: 10.1073/Pnas.87.23.9315 |
0.393 |
|
| 1989 |
Matsuo Y, Yokoyama S. Molecular structure of the human alcohol dehydrogenase 1 gene Febs Letters. 243: 57-60. PMID 2920825 DOI: 10.1016/0014-5793(89)81217-7 |
0.33 |
|
| 1989 |
Yokoyama S, Isenberg KE, Wright AF. Adaptive evolution of G-protein coupled receptor genes Molecular Biology and Evolution. 6: 342-353. PMID 2515412 DOI: 10.1093/Oxfordjournals.Molbev.A040552 |
0.354 |
|
| 1989 |
Yokoyama S, Yokoyama R. Molecular evolution of human visual pigment genes Molecular Biology and Evolution. 6: 186-197. PMID 2497293 DOI: 10.1093/Oxfordjournals.Molbev.A040537 |
0.379 |
|
| 1987 |
Yokoyama S, Yokoyama R. Molecular evolution of mammalian class I alcohol dehydrogenase Molecular Biology and Evolution. 4: 504-513. PMID 3449738 DOI: 10.1093/Oxfordjournals.Molbev.A040459 |
0.302 |
|
| 1983 |
Yokoyama S. Social Selection in Human Populations: Fitness Interaction Among Sibs. The American Naturalist. 122: 433-443. PMID 29513555 DOI: 10.1086/284147 |
0.306 |
|
| 1983 |
Hall BG, Yokoyama S, Calhoun DH. Role of cryptic genes in microbial evolution Molecular Biology and Evolution. 1: 109-124. PMID 6400646 DOI: 10.1093/Oxfordjournals.Molbev.A040300 |
0.349 |
|
| 1981 |
Yokoyama S. The effect of social selection on population dynamics of rare deleterious genes. Heredity. 45: 271-80. PMID 7263275 DOI: 10.1038/Hdy.1980.67 |
0.324 |
|
| 1978 |
Yokoyama S, Felsenstein J. A model of kin selection for an altruistic trait considered as a quantitative character. Proceedings of the National Academy of Sciences of the United States of America. 75: 420-2. PMID 272659 DOI: 10.1073/Pnas.75.1.420 |
0.553 |
|
| 1976 |
Felsenstein J, Yokoyama S. The evolutionary advantage of recombination. II. Individual selection for recombination. Genetics. 83: 845-59. PMID 971808 |
0.532 |
|
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