| Year |
Citation |
Score |
| 2024 |
Vazquez JM, Lauterbur ME, Mottaghinia S, Bucci M, Fraser D, Gray-Sandoval G, Gaucherand L, Haidar ZR, Han M, Kohler W, Lama TM, Corf AL, Maesen S, McMillan D, Li S, ... ... Sudmant PH, et al. Extensive longevity and DNA virus-driven adaptation in nearctic Myotis bats. Biorxiv : the Preprint Server For Biology. PMID 39416019 DOI: 10.1101/2024.10.10.617725 |
0.671 |
|
| 2024 |
Bolognini D, Halgren A, Lou RN, Raveane A, Rocha JL, Guarracino A, Soranzo N, Chin CS, Garrison E, Sudmant PH. Recurrent evolution and selection shape structural diversity at the amylase locus. Nature. PMID 39232174 DOI: 10.1038/s41586-024-07911-1 |
0.446 |
|
| 2024 |
Yoo D, Rhie A, Hebbar P, Antonacci F, Logsdon GA, Solar SJ, Antipov D, Pickett BD, Safonova Y, Montinaro F, Luo Y, Malukiewicz J, Storer JM, Lin J, Sequeira AN, ... ... Sudmant PH, et al. Complete sequencing of ape genomes. Biorxiv : the Preprint Server For Biology. PMID 39131277 DOI: 10.1101/2024.07.31.605654 |
0.82 |
|
| 2024 |
L Rocha J, Lou RN, Sudmant PH. Structural variation in humans and our primate kin in the era of telomere-to-telomere genomes and pangenomics. Current Opinion in Genetics & Development. 87: 102233. PMID 39042999 DOI: 10.1016/j.gde.2024.102233 |
0.421 |
|
| 2024 |
Zhou ZT, Owens GL, Larson WA, Lou RN, Sudmant PH. loco-pipe: an automated pipeline for population genomics with low-coverage whole-genome sequencing. Bioinformatics Advances. 4: vbae098. PMID 39006965 DOI: 10.1093/bioadv/vbae098 |
0.677 |
|
| 2024 |
Schweiger R, Lee S, Zhou C, Yang TP, Smith K, Li S, Sanghvi R, Neville M, Mitchell E, Nessa A, Wadge S, Small KS, Campbell PJ, Sudmant PH, Rahbari R, et al. Insights into non-crossover recombination from long-read sperm sequencing. Biorxiv : the Preprint Server For Biology. PMID 39005338 DOI: 10.1101/2024.07.05.602249 |
0.304 |
|
| 2024 |
Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, ... ... Sudmant PH, et al. The complete sequence and comparative analysis of ape sex chromosomes. Nature. PMID 38811727 DOI: 10.1038/s41586-024-07473-2 |
0.688 |
|
| 2024 |
Allen KN, Torres-Velarde JM, Vazquez JM, Moreno-Santillán DD, Sudmant PH, Vázquez-Medina JP. Hypoxia exposure blunts angiogenic signaling and upregulates the antioxidant system in endothelial cells derived from elephant seals. Bmc Biology. 22: 91. PMID 38654271 DOI: 10.1186/s12915-024-01892-3 |
0.532 |
|
| 2024 |
Bolognini D, Halgren A, Lou RN, Raveane A, Rocha JL, Guarracino A, Soranzo N, Chin J, Garrison E, Sudmant PH. Global diversity, recurrent evolution, and recent selection on amylase structural haplotypes in humans. Biorxiv : the Preprint Server For Biology. PMID 38370750 DOI: 10.1101/2024.02.07.579378 |
0.436 |
|
| 2024 |
Allentoft ME, Sikora M, Refoyo-Martínez A, Irving-Pease EK, Fischer A, Barrie W, Ingason A, Stenderup J, Sjögren KG, Pearson A, Sousa da Mota B, Schulz Paulsson B, Halgren A, Macleod R, Jørkov MLS, ... ... Sudmant PH, et al. Publisher Correction: Population genomics of post-glacial western Eurasia. Nature. PMID 38238538 DOI: 10.1038/s41586-024-07044-5 |
0.515 |
|
| 2024 |
Allentoft ME, Sikora M, Refoyo-Martínez A, Irving-Pease EK, Fischer A, Barrie W, Ingason A, Stenderup J, Sjögren KG, Pearson A, Sousa da Mota B, Schulz Paulsson B, Halgren A, Macleod R, Jørkov MLS, ... ... Sudmant PH, et al. Population genomics of post-glacial western Eurasia. Nature. 625: 301-311. PMID 38200295 DOI: 10.1038/s41586-023-06865-0 |
0.557 |
|
| 2024 |
Irving-Pease EK, Refoyo-Martínez A, Barrie W, Ingason A, Pearson A, Fischer A, Sjögren KG, Halgren AS, Macleod R, Demeter F, Henriksen RA, Vimala T, McColl H, Vaughn AH, Speidel L, ... ... Sudmant PH, et al. The selection landscape and genetic legacy of ancient Eurasians. Nature. 625: 312-320. PMID 38200293 DOI: 10.1038/s41586-023-06705-1 |
0.461 |
|
| 2023 |
Capel SLR, Hamilton NM, Fraser D, Escalona M, Nguyen O, Sacco S, Sahasrabudhe R, Seligmann W, Vazquez JM, Sudmant PH, Morrison ML, Wayne RK, Buchalski MR. Reference genome of Townsend's big-eared bat, Corynorhinus townsendii. The Journal of Heredity. PMID 38092381 DOI: 10.1093/jhered/esad078 |
0.683 |
|
| 2023 |
Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, ... ... Sudmant PH, et al. The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes. Biorxiv : the Preprint Server For Biology. PMID 38077089 DOI: 10.1101/2023.11.30.569198 |
0.695 |
|
| 2023 |
Li S, Vazquez JM, Sudmant PH. The evolution of aging and lifespan. Trends in Genetics : Tig. 39: 830-843. PMID 37714733 DOI: 10.1016/j.tig.2023.08.005 |
0.625 |
|
| 2023 |
Curti J, Fraser D, Escalona M, Fairbairn CW, Sacco S, Sahasrabudhe R, Nguyen O, Seligmann W, Sudmant PH, Toffelmier E, Vazquez JM, Wayne R, Shaffer HB, Buchalski MR. A genome assembly of the Yuma myotis bat, Myotis yumanensis. The Journal of Heredity. PMID 37712349 DOI: 10.1093/jhered/esad053 |
0.683 |
|
| 2023 |
Sykes NTB, Kolora SRR, Sudmant PH, Owens GL. Rapid turnover and evolution of sex-determining regions in Sebastes rockfishes. Molecular Ecology. PMID 37548650 DOI: 10.1111/mec.17090 |
0.647 |
|
| 2023 |
Allen KN, Torres-Velarde JM, Vazquez JM, Moreno-Santillan DD, Sudmant PH, Vázquez-Medina JP. Hypoxia blunts angiogenic signaling and upregulates the antioxidant system in elephant seal endothelial cells. Biorxiv : the Preprint Server For Biology. PMID 37461722 DOI: 10.1101/2023.07.01.547248 |
0.564 |
|
| 2023 |
Chin CS, Behera S, Khalak A, Sedlazeck FJ, Sudmant PH, Wagner J, Zook JM. Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes. Nature Methods. PMID 37365340 DOI: 10.1038/s41592-023-01914-y |
0.404 |
|
| 2023 |
L Rocha J, Silva P, Santos N, Nakamura M, Afonso S, Qninba A, Boratynski Z, Sudmant PH, Brito JC, Nielsen R, Godinho R. North African fox genomes show signatures of repeated introgression and adaptation to life in deserts. Nature Ecology & Evolution. PMID 37308700 DOI: 10.1038/s41559-023-02094-w |
0.505 |
|
| 2023 |
Karin BR, Arellano S, Wang L, Walzer K, Pomerantz A, Vasquez JM, Chatla K, Sudmant PH, Bach BH, Smith LL, McGuire JA. Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes. Bmc Genomics. 24: 229. PMID 37131128 DOI: 10.1186/s12864-023-09277-6 |
0.322 |
|
| 2022 |
Yamamoto R, Chung R, Vazquez JM, Sheng H, Steinberg PL, Ioannidis NM, Sudmant PH. Tissue-specific impacts of aging and genetics on gene expression patterns in humans. Nature Communications. 13: 5803. PMID 36192477 DOI: 10.1038/s41467-022-33509-0 |
0.599 |
|
| 2022 |
Jin Y, Aguilar-Gómez D, Brandt DYC, Square TA, Li J, Liu Z, Wang T, Sudmant PH, Miller CT, Nielsen R. Population genomics of variegated toad-headed lizard Phrynocephalus versicolor and its adaptation to the colorful sand of the Gobi Desert. Genome Biology and Evolution. PMID 35679302 DOI: 10.1093/gbe/evac076 |
0.503 |
|
| 2021 |
Kolora SRR, Owens GL, Vazquez JM, Stubbs A, Chatla K, Jainese C, Seeto K, McCrea M, Sandel MW, Vianna JA, Maslenikov K, Bachtrog D, Orr JW, Love M, Sudmant PH. Origins and evolution of extreme life span in Pacific Ocean rockfishes. Science (New York, N.Y.). 374: 842-847. PMID 34762458 DOI: 10.1126/science.abg5332 |
0.686 |
|
| 2020 |
Sandel MW, Fast KM, Albanese B, Popp A, Nensteil P, Sudmant PH. Complete mitochondrial genome of the imperiled Trispot Darter (Etheostoma trisella) Mitochondrial Dna Part B. 5: 1523-1524. DOI: 10.1080/23802359.2020.1741459 |
0.362 |
|
| 2017 |
Ventura M, Catacchio CR, Sajjadian S, Vives L, Sudmant PH, Marques-Bonet T, Graves TA, Wilson RK, Eichler EE. Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2. Genome Research. 27: 1621.1. PMID 28864551 DOI: 10.1101/Gr.226878.117 |
0.677 |
|
| 2016 |
Nuttle X, Giannuzzi G, Duyzend MH, Schraiber JG, Narvaiza I, Sudmant PH, Penn O, Chiatante G, Malig M, Huddleston J, Benner C, Camponeschi F, Ciofi-Baffoni S, Stessman HA, Marchetto MC, et al. Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility. Nature. PMID 27487209 DOI: 10.1038/Nature19075 |
0.795 |
|
| 2015 |
Sudmant PH, Alexis MS, Burge CB. Meta-analysis of RNA-seq expression data across species, tissues and studies. Genome Biology. 16: 287. PMID 26694591 DOI: 10.1186/S13059-015-0853-4 |
0.321 |
|
| 2015 |
Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Hsi-Yang Fritz M, Konkel MK, Malhotra A, Stütz AM, Shi X, Paolo Casale F, et al. An integrated map of structural variation in 2,504 human genomes. Nature. 526: 75-81. PMID 26432246 DOI: 10.1038/Nature15394 |
0.811 |
|
| 2015 |
Etienne L, Bibollet-Ruche F, Sudmant PH, Wu LI, Hahn BH, Emerman M. The Role of the Antiviral APOBEC3 Gene Family in Protecting Chimpanzees against Lentiviruses from Monkeys. Plos Pathogens. 11: e1005149. PMID 26394054 DOI: 10.1371/Journal.Ppat.1005149 |
0.363 |
|
| 2015 |
Sudmant PH, Mallick S, Nelson BJ, Hormozdiari F, Krumm N, Huddleston J, Coe BP, Baker C, Nordenfelt S, Bamshad M, Jorde LB, Posukh OL, Sahakyan H, Watkins WS, Yepiskoposyan L, et al. Global diversity, population stratification, and selection of human copy number variation. Science (New York, N.Y.). PMID 26249230 DOI: 10.1126/Science.Aab3761 |
0.81 |
|
| 2015 |
Carlson KD, Sudmant PH, Press MO, Eichler EE, Shendure J, Queitsch C. Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals. Genome Research. 25: 1244. PMID 26240161 |
0.39 |
|
| 2015 |
Xue Y, Prado-Martinez J, Sudmant PH, Narasimhan V, Ayub Q, Szpak M, Frandsen P, Chen Y, Yngvadottir B, Cooper DN, de Manuel M, Hernandez-Rodriguez J, Lobon I, Siegismund HR, Pagani L, et al. Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding. Science (New York, N.Y.). 348: 242-5. PMID 25859046 DOI: 10.1126/Science.Aaa3952 |
0.732 |
|
| 2015 |
Carlson KD, Sudmant PH, Press MO, Eichler EE, Shendure J, Queitsch C. MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals. Genome Research. 25: 750-61. PMID 25659649 DOI: 10.1101/Gr.182212.114 |
0.58 |
|
| 2015 |
Chaisson MJ, Huddleston J, Dennis MY, Sudmant PH, Malig M, Hormozdiari F, Antonacci F, Surti U, Sandstrom R, Boitano M, Landolin JM, Stamatoyannopoulos JA, Hunkapiller MW, Korlach J, Eichler EE. Resolving the complexity of the human genome using single-molecule sequencing. Nature. 517: 608-11. PMID 25383537 DOI: 10.1038/Nature13907 |
0.815 |
|
| 2014 |
Antonacci F, Dennis MY, Huddleston J, Sudmant PH, Steinberg KM, Rosenfeld JA, Miroballo M, Graves TA, Vives L, Malig M, Denman L, Raja A, Stuart A, Tang J, Munson B, et al. Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability. Nature Genetics. 46: 1293-302. PMID 25326701 DOI: 10.1038/Ng.3120 |
0.798 |
|
| 2014 |
Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature. 513: 409-13. PMID 25230663 DOI: 10.1038/Nature13673 |
0.606 |
|
| 2014 |
Falchi M, El-Sayed Moustafa JS, Takousis P, Pesce F, Bonnefond A, Andersson-Assarsson JC, Sudmant PH, Dorajoo R, Al-Shafai MN, Bottolo L, Ozdemir E, So HC, Davies RW, Patrice A, Dent R, et al. Low copy number of the salivary amylase gene predisposes to obesity. Nature Genetics. 46: 492-7. PMID 24686848 DOI: 10.1038/Ng.2939 |
0.551 |
|
| 2014 |
Mariotti M, Smith TF, Sudmant PH, Goldberger G. Pseudogenization of testis-specific Lfg5 predates human/Neanderthal divergence. Journal of Human Genetics. 59: 288-91. PMID 24599118 DOI: 10.1038/Jhg.2014.6 |
0.373 |
|
| 2014 |
Huddleston J, Ranade S, Malig M, Antonacci F, Chaisson M, Hon L, Sudmant PH, Graves TA, Alkan C, Dennis MY, Wilson RK, Turner SW, Korlach J, Eichler EE. Reconstructing complex regions of genomes using long-read sequencing technology. Genome Research. 24: 688-96. PMID 24418700 DOI: 10.1101/Gr.168450.113 |
0.809 |
|
| 2014 |
Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature. 505: 43-9. PMID 24352235 DOI: 10.1038/Nature12886 |
0.645 |
|
| 2013 |
Hormozdiari F, Konkel MK, Prado-Martinez J, Chiatante G, Herraez IH, Walker JA, Nelson B, Alkan C, Sudmant PH, Huddleston J, Catacchio CR, Ko A, Malig M, Baker C, et al. Rates and patterns of great ape retrotransposition. Proceedings of the National Academy of Sciences of the United States of America. 110: 13457-62. PMID 23884656 DOI: 10.1073/Pnas.1310914110 |
0.802 |
|
| 2013 |
Sudmant PH, Huddleston J, Catacchio CR, Malig M, Hillier LW, Baker C, Mohajeri K, Kondova I, Bontrop RE, Persengiev S, Antonacci F, Ventura M, Prado-Martinez J, Marques-Bonet T, et al. Evolution and diversity of copy number variation in the great ape lineage. Genome Research. 23: 1373-82. PMID 23825009 DOI: 10.1101/Gr.158543.113 |
0.816 |
|
| 2013 |
Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, et al. Great ape genetic diversity and population history. Nature. 499: 471-5. PMID 23823723 DOI: 10.1038/Nature12228 |
0.801 |
|
| 2012 |
Campbell CD, Chong JX, Malig M, Ko A, Dumont BL, Han L, Vives L, O'Roak BJ, Sudmant PH, Shendure J, Abney M, Ober C, Eichler EE. Estimating the human mutation rate using autozygosity in a founder population. Nature Genetics. 44: 1277-81. PMID 23001126 DOI: 10.1038/Ng.2418 |
0.774 |
|
| 2012 |
Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, et al. A high-coverage genome sequence from an archaic Denisovan individual. Science (New York, N.Y.). 338: 222-6. PMID 22936568 DOI: 10.1126/Science.1224344 |
0.751 |
|
| 2012 |
Steinberg KM, Antonacci F, Sudmant PH, Kidd JM, Campbell CD, Vives L, Malig M, Scheinfeldt L, Beggs W, Ibrahim M, Lema G, Nyambo TB, Omar SA, Bodo JM, Froment A, et al. Structural diversity and African origin of the 17q21.31 inversion polymorphism. Nature Genetics. 44: 872-80. PMID 22751100 DOI: 10.1038/Ng.2335 |
0.772 |
|
| 2012 |
Krumm N, Sudmant PH, Ko A, O'Roak BJ, Malig M, Coe BP, Quinlan AR, Nickerson DA, Eichler EE. Copy number variation detection and genotyping from exome sequence data. Genome Research. 22: 1525-32. PMID 22585873 DOI: 10.1101/Gr.138115.112 |
0.806 |
|
| 2012 |
Dennis MY, Nuttle X, Sudmant PH, Antonacci F, Graves TA, Nefedov M, Rosenfeld JA, Sajjadian S, Malig M, Kotkiewicz H, Curry CJ, Shafer S, Shaffer LG, de Jong PJ, Wilson RK, et al. Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication. Cell. 149: 912-22. PMID 22559943 DOI: 10.1016/J.Cell.2012.03.033 |
0.804 |
|
| 2012 |
Ventura M, Catacchio CR, Sajjadian S, Vives L, Sudmant PH, Marques-Bonet T, Graves TA, Wilson RK, Eichler EE. The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2. Genome Research. 22: 1036-49. PMID 22419167 DOI: 10.1101/Gr.136556.111 |
0.756 |
|
| 2012 |
Fieuw A, Kumps C, Schramm A, Pattyn F, Menten B, Antonacci F, Sudmant P, Schulte JH, Van Roy N, Vergult S, Buckley PG, De Paepe A, Noguera R, Versteeg R, Stallings R, et al. Identification of a novel recurrent 1q42.2-1qter deletion in high risk MYCN single copy 11q deleted neuroblastomas. International Journal of Cancer. Journal International Du Cancer. 130: 2599-606. PMID 21796619 DOI: 10.1002/Ijc.26317 |
0.652 |
|
| 2012 |
Casillas S, Alkan C, Antonacci F, Sudmant PH, Eichler EE, Cáceres M. Calling inversions from next-generation sequencing paired-end mapping data with GRIAL F1000research. 3. DOI: 10.7490/F1000Research.1090292.1 |
0.687 |
|
| 2011 |
Campbell CD, Sampas N, Tsalenko A, Sudmant PH, Kidd JM, Malig M, Vu TH, Vives L, Tsang P, Bruhn L, Eichler EE. Population-genetic properties of differentiated human copy-number polymorphisms. American Journal of Human Genetics. 88: 317-32. PMID 21397061 DOI: 10.1016/J.Ajhg.2011.02.004 |
0.783 |
|
| 2011 |
Kitzman JO, Mackenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J. Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nature Biotechnology. 29: 59-63. PMID 21170042 DOI: 10.1038/Nbt.1740 |
0.753 |
|
| 2011 |
Kitzman JO, MacKenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J. Erratum: Haplotype-resolved genome sequencing of a Gujarati Indian individual Nature Biotechnology. 29: 459-459. DOI: 10.1038/Nbt0511-459C |
0.651 |
|
| 2010 |
Sudmant PH, Kitzman JO, Antonacci F, Alkan C, Malig M, Tsalenko A, Sampas N, Bruhn L, Shendure J, Eichler EE. Diversity of human copy number variation and multicopy genes. Science (New York, N.Y.). 330: 641-6. PMID 21030649 DOI: 10.1126/Science.1197005 |
0.804 |
|
| Show low-probability matches. |