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Craig T. Martin, B.A., Ph.D. - Publications

Affiliations: 
Chemistry University of Massachusetts, Amherst, Amherst, MA 
Area:
transcription, rna
Website:
http://people.chem.umass.edu/cmartin
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71 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 MalagodaPathiranage K, Banerjee R, Martin CT. A new approach to RNA synthesis: immobilization of stably and functionally co-tethered promoter DNA and T7 RNA polymerase. Nucleic Acids Research. PMID 39011885 DOI: 10.1093/nar/gkae599  0.563
2023 Malagoda Pathiranage K, Martin CT. A simple approach to improving RNA synthesis: Salt inhibition of RNA rebinding coupled with strengthening promoter binding by a targeted gap in the DNA. Methods in Enzymology. 691: 209-222. PMID 37914447 DOI: 10.1016/bs.mie.2023.06.001  0.572
2023 MalagodaPathiranage K, Cavac E, Chen TH, Roy B, Martin CT. High-salt transcription from enzymatically gapped promoters nets higher yields and purity of transcribed RNAs. Nucleic Acids Research. PMID 36718937 DOI: 10.1093/nar/gkad027  0.605
2021 Cavac E, Ramírez-Tapia LE, Martin CT. High salt transcription of DNA co-tethered with T7 RNA polymerase to beads generates increased yields of highly pure RNA. The Journal of Biological Chemistry. 100999. PMID 34303704 DOI: 10.1016/j.jbc.2021.100999  0.852
2019 Gholamalipour Y, Johnson WC, Martin CT. Efficient inhibition of RNA self-primed extension by addition of competing 3'-capture DNA-improved RNA synthesis by T7 RNA polymerase. Nucleic Acids Research. PMID 31392994 DOI: 10.1093/Nar/Gkz700  0.676
2018 Gholamalipour Y, Karunanayake Mudiyanselage A, Martin CT. 3' end additions by T7 RNA polymerase are RNA self-templated, distributive and diverse in character-RNA-Seq analyses. Nucleic Acids Research. PMID 30219859 DOI: 10.1093/Nar/Gky796  0.666
2015 Karunanayake Mudiyanselage A, Moore S, Gholamalipour Y, Cavac E, Martin CT. 101 A new approach to model and directly control "Co-transcriptional" RNA folding. Journal of Biomolecular Structure & Dynamics. 33: 64. PMID 26103312 DOI: 10.1080/07391102.2015.1032663  0.484
2014 Martin CT, Theis K. Closed for business: exit-channel coupling to active site conformation in bacterial RNA polymerase. Nature Structural & Molecular Biology. 21: 741-2. PMID 25192262 DOI: 10.1038/Nsmb.2883  0.51
2014 Martin CT, Theis K. Closed for business: exit-channel coupling to active site conformation in bacterial RNA polymerase. Nature Structural & Molecular Biology. 21: 741-2. PMID 25192262 DOI: 10.1038/Nsmb.2883  0.51
2014 Lionberger TA, Vahia A, Hirsh AD, Taranova M, Andricioaei I, Perkins NC, Meyhöfer E, Martin CT. Mechanical Strain Generated by RNA Polymerase during Transcription Initiation can Drive Structural Changes in DNA Topology that Relieve Repression Biophysical Journal. 106: 488a. DOI: 10.1016/J.Bpj.2013.11.4478  0.845
2014 Martin CT, Mudiyanselage APKKK. A New Approach to Model and Directly Control Co-Transcriptional RNA Folding Biophysical Journal. 106: 494. DOI: 10.1016/J.Bpj.2013.11.2763  0.652
2013 Samanta S, Martin CT. Insights into the mechanism of initial transcription in escherichia coli RNA polymerase Journal of Biological Chemistry. 288: 31993-32003. PMID 24047893 DOI: 10.1074/jbc.M113.497669  0.608
2013 Samanta S, Martin CT. Insights into the mechanism of initial transcription in escherichia coli RNA polymerase Journal of Biological Chemistry. 288: 31993-32003. PMID 24047893 DOI: 10.1074/Jbc.M113.497669  0.779
2013 Ramirez-Tapia LE, Samanta S, Mathavan K, Martin CT. The Mechanics of Initial Transcription: The RNA-DNA Hybrid Pushes on the Protein, and the Protein Pushes Back! Biophysical Journal. 104: 365a. DOI: 10.1016/J.Bpj.2012.11.2028  0.852
2012 Ramírez-Tapia LE, Martin CT. New insights into the mechanism of initial transcription: The T7 RNA polymerase mutant p266l transitions to elongation at longer RNA lengths than wild type Journal of Biological Chemistry. 287: 37352-37361. PMID 22923611 DOI: 10.1074/Jbc.M112.370643  0.855
2012 Ramírez-Tapia LE, Martin CT. New insights into the mechanism of initial transcription: The T7 RNA polymerase mutant p266l transitions to elongation at longer RNA lengths than wild type Journal of Biological Chemistry. 287: 37352-37361. PMID 22923611 DOI: 10.1074/jbc.M112.370643  0.603
2012 Samanta S, Martin C. Role of DNA Bubble Collapse in Initiation and the Transition to Elongation-A Common Mechanism in all RNA Polymerases Biophysical Journal. 102: 285a-286a. DOI: 10.1016/J.Bpj.2011.11.1579  0.802
2012 Ramirez-Tapia LE, Martin CT. Insights into Abortive Cycling during Initial Transcription by T7 RNA Polymerase Biophysical Journal. 102: 285a. DOI: 10.1016/J.Bpj.2011.11.1577  0.857
2011 Vahia AV, Martin CT. Direct tests of the energetic basis of abortive cycling in transcription Biochemistry. 50: 7015-7022. PMID 21776950 DOI: 10.1021/Bi200620Q  0.871
2011 Lionberger TA, Vahia A, Martin CT, Meyhöfer E. Tightly Looped DNA Represses Transcription Initiation by T7 RNA Polymerase Biophysical Journal. 100: 65a. DOI: 10.1016/J.Bpj.2010.12.552  0.844
2010 Vahia AV, Martin CT. The Energetic Basis of Abortive Cycling in Transcription Biophysical Journal. 98: 68a-69a. DOI: 10.1016/J.Bpj.2009.12.390  0.873
2010 Samanta S, Liu X, Martin CT. A New Model For Elongation Complex Stability in RNA Polymerase - the “topological Lock” Biophysical Journal. 98: 68a. DOI: 10.1016/J.Bpj.2009.12.387  0.808
2009 Liu X, Martin CT. Transcription elongation complex stability: The topological lock Journal of Biological Chemistry. 284: 36262-36270. PMID 19846559 DOI: 10.1074/Jbc.M109.056820  0.741
2009 Vahia A, Martin CT. Stress, Scrunching And Tethering: The Roles Of The Connecting Template Strand In Initiation By T7 RNA Polymerase Biophysical Journal. 96: 55a-56a. DOI: 10.1016/J.Bpj.2008.12.183  0.879
2007 Zhou Y, Navaroli DM, Enuameh MS, Martin CT. Dissociation of halted T7 RNA polymerase elongation complexes proceeds via a forward-translocation mechanism. Proceedings of the National Academy of Sciences of the United States of America. 104: 10352-7. PMID 17553968 DOI: 10.1073/Pnas.0606306104  0.844
2007 Turingan RS, Theis K, Martin CT. Twisted or shifted? Fluorescence measurements of late intermediates in transcription initiation by T7 RNA polymerase. Biochemistry. 46: 6165-8. PMID 17472344 DOI: 10.1021/Bi700058B  0.863
2007 Turingan RS, Liu C, Hawkins ME, Martin CT. Structural confirmation of a bent and open model for the initiation complex of T7 RNA polymerase. Biochemistry. 46: 1714-23. PMID 17253774 DOI: 10.1021/Bi061905D  0.842
2006 Zhou Y, Martin CT. Observed instability of T7 RNA polymerase elongation complexes can be dominated by collision-induced "bumping". The Journal of Biological Chemistry. 281: 24441-8. PMID 16816387 DOI: 10.1074/Jbc.M604369200  0.693
2006 Gong P, Martin CT. Mechanism of instability in abortive cycling by T7 RNA polymerase. The Journal of Biological Chemistry. 281: 23533-44. PMID 16790422 DOI: 10.1074/Jbc.M604023200  0.766
2006 Han G, You CC, Kim BJ, Turingan RS, Forbes NS, Martin CT, Rotello VM. Light-regulated release of DNA and its delivery to nuclei by means of photolabile gold nanoparticles. Angewandte Chemie (International Ed. in English). 45: 3165-9. PMID 16572498 DOI: 10.1002/Anie.200600214  0.767
2006 Han G, Martin CT, Rotello VM. Stability of gold nanoparticle-bound DNA toward biological, physical, and chemical agents. Chemical Biology & Drug Design. 67: 78-82. PMID 16492152 DOI: 10.1111/J.1747-0285.2005.00324.X  0.639
2005 Han G, Chari NS, Verma A, Hong R, Martin CT, Rotello VM. Controlled recovery of the transcription of nanoparticle-bound DNA by intracellular concentrations of glutathione. Bioconjugate Chemistry. 16: 1356-9. PMID 16287230 DOI: 10.1021/Bc050173J  0.734
2005 Martin CT, Esposito EA, Theis K, Gong P. Structure and function in promoter escape by T7 RNA polymerase. Progress in Nucleic Acid Research and Molecular Biology. 80: 323-47. PMID 16164978 DOI: 10.1016/S0079-6603(05)80008-X  0.868
2004 Theis K, Gong P, Martin CT. Topological and conformational analysis of the initiation and elongation complex of t7 RNA polymerase suggests a new twist. Biochemistry. 43: 12709-15. PMID 15461442 DOI: 10.1021/Bi0486987  0.611
2004 Gong P, Esposito EA, Martin CT. Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase. The Journal of Biological Chemistry. 279: 44277-85. PMID 15337752 DOI: 10.1074/Jbc.M409118200  0.873
2004 Esposito EA, Martin CT. Cross-linking of promoter DNA to T7 RNA polymerase does not prevent formation of a stable elongation complex. The Journal of Biological Chemistry. 279: 44270-6. PMID 15304497 DOI: 10.1074/Jbc.M407688200  0.867
2003 Martin CT, Ujvári A, Liu C. Evaluation of fluorescence spectroscopy methods for mapping melted regions of DNA along the transcription pathway. Methods in Enzymology. 371: 13-33. PMID 14712689 DOI: 10.1016/S0076-6879(03)71002-7  0.558
2003 Kuzmine I, Gottlieb PA, Martin CT. Binding of the priming nucleotide in the initiation of transcription by T7 RNA polymerase Journal of Biological Chemistry. 278: 2819-2823. PMID 12427761 DOI: 10.1074/Jbc.M208405200  0.853
2003 Martin CT. Book Review: DNA-Protein Interactions: Principles and Protocols, 2nd. Edition Edited by Tom Moss Chembiochem. 4: 546-546. DOI: 10.1002/Cbic.200390079  0.45
2002 Liu C, Martin CT. Promoter clearance by T7 RNA polymerase. Initial bubble collapse and transcript dissociation monitored by base analog fluorescence. The Journal of Biological Chemistry. 277: 2725-31. PMID 11694519 DOI: 10.1074/Jbc.M108856200  0.656
2001 McIntosh CM, Esposito EA, Boal AK, Simard JM, Martin CT, Rotello VM. Inhibition of DNA transcription using cationic mixed monolayer protected gold clusters. Journal of the American Chemical Society. 123: 7626-9. PMID 11480984 DOI: 10.1021/Ja015556G  0.818
2001 Jiang M, Rong M, Martin C, McAllister WT. Interrupting the template strand of the T7 promoter facilitates translocation of the DNA during initiation, reducing transcript slippage and the release of abortive products Journal of Molecular Biology. 310: 509-522. PMID 11439019 DOI: 10.1006/Jmbi.2001.4793  0.643
2001 Kuzmine I, Gottlieb PA, Martin CT. Structure in nascent RNA leads to termination of slippage transcription by T7 RNA polymerase Nucleic Acids Research. 29: 2601-2606. PMID 11410669 DOI: 10.1093/Nar/29.12.2601  0.856
2001 Liu C, Martin CT. Fluorescence characterization of the transcription bubble in elongation complexes of T7 RNA polymerase. Journal of Molecular Biology. 308: 465-75. PMID 11327781 DOI: 10.1006/Jmbi.2001.4601  0.685
2001 Kuzmine I, Martin CT. Pre-steady-state kinetics of initiation of transcription by T7 RNA polymerase: A new kinetic model Journal of Molecular Biology. 305: 559-566. PMID 11152612 DOI: 10.1006/Jmbi.2000.4316  0.816
2000 Ujvári A, Martin CT. Evidence for DNA bending at the T7 RNA polymerase promoter. Journal of Molecular Biology. 295: 1173-84. PMID 10653695 DOI: 10.1006/Jmbi.1999.3418  0.722
1997 Ujvári A, Martin CT. Identification of a minimal binding element within the T7 RNA polymerase promoter. Journal of Molecular Biology. 273: 775-81. PMID 9367770 DOI: 10.1006/Jmbi.1997.1350  0.59
1997 Weston BF, Kuzmine I, Martin CT. Positioning of the start site in the initiation of transcription by bacteriophage T7 RNA polymerase Journal of Molecular Biology. 272: 21-30. PMID 9299334 DOI: 10.1006/Jmbi.1997.1199  0.832
1996 Ujvári A, Martin CT. Thermodynamic and kinetic measurements of promoter binding by T7 RNA polymerase. Biochemistry. 35: 14574-82. PMID 8931555 DOI: 10.1021/Bi961165G  0.544
1996 Li T, Ho HH, Maslak M, Schick C, Martin CT. Major groove recognition elements in the middle of the T7 RNA polymerase promoter. Biochemistry. 35: 3722-7. PMID 8619992 DOI: 10.1021/Bi9524373  0.573
1995 Schick C, Martin CT. Tests of a model of specific contacts in T7 RNA polymerase-promoter interactions. Biochemistry. 34: 666-72. PMID 7819262 DOI: 10.1021/Bi00002A034  0.62
1994 Maslak M, Martin CT. Effects of solution conditions on the steady-state kinetics of initiation of transcription by T7 RNA polymerase. Biochemistry. 33: 6918-24. PMID 7911327 DOI: 10.1021/Bi00188A022  0.646
1993 Maslak M, Martin CT. Kinetic analysis of T7 RNA polymerase transcription initiation from promoters containing single-stranded regions. Biochemistry. 32: 4281-5. PMID 8476857 DOI: 10.1021/Bi00067A017  0.641
1993 Schick C, Martin CT. Identification of specific contacts in T3 RNA polymerase-promoter interactions: kinetic analysis using small synthetic promoters. Biochemistry. 32: 4275-80. PMID 8476856 DOI: 10.1021/Bi00067A016  0.625
1993 Maslak M, Jaworski MD, Martin CT. Tests of a model for promoter recognition by T7 RNA polymerase: thymine methyl group contacts. Biochemistry. 32: 4270-4. PMID 8476855 DOI: 10.1021/Bi00067A015  0.601
1990 Prigodich RV, Martin CT. Reaction of single-stranded DNA with hydroxyl radical generated by iron(II)-ethylenediaminetetraacetic acid. Biochemistry. 29: 8017-9. PMID 2124503 DOI: 10.1021/Bi00487A003  0.512
1989 Martin CT, Coleman JE. T7 RNA polymerase does not interact with the 5'-phosphate of the initiating nucleotide. Biochemistry. 28: 2760-2. PMID 2663058 DOI: 10.1021/Bi00433A002  0.764
1989 Muller DK, Martin CT, Coleman JE. T7 RNA polymerase interacts with its promoter from one side of the DNA helix. Biochemistry. 28: 3306-13. PMID 2545254 DOI: 10.1021/Bi00434A028  0.715
1988 Martin CT, Muller DK, Coleman JE. Processivity in early stages of transcription by T7 RNA polymerase. Biochemistry. 27: 3966-74. PMID 3415967 DOI: 10.1021/Bi00411A012  0.792
1988 Chan SI, Li PM, Nilsson T, Gelles J, Blair DF, Martin CT. A proposal for the site and mechanism of redox-linked proton translocation in cytochrome c oxidase. Progress in Clinical and Biological Research. 274: 731-47. PMID 2841687  0.652
1988 Martin CT, Scholes CP, Chan SI. On the nature of cysteine coordination to CuA in cytochrome c oxidase. The Journal of Biological Chemistry. 263: 8420-9. PMID 2836423  0.493
1988 Muller DK, Martin CT, Coleman JE. Processivity of proteolytically modified forms of T7 RNA polymerase. Biochemistry. 27: 5763-71. PMID 2460133 DOI: 10.1021/Bi00415A055  0.655
1987 Martin CT, Coleman JE. Kinetic analysis of T7 RNA polymerase-promoter interactions with small synthetic promoters. Biochemistry. 26: 2690-6. PMID 3300768 DOI: 10.1021/Bi00384A006  0.747
1986 Giedroc DP, Keating KM, Martin CT, Williams KR, Coleman JE. Zinc metalloproteins involved in replication and transcription. Journal of Inorganic Biochemistry. 28: 155-69. PMID 3543219 DOI: 10.1016/0162-0134(86)80079-4  0.739
1986 King GC, Martin CT, Pham TT, Coleman JE. Transcription by T7 RNA polymerase is not zinc-dependent and is abolished on amidomethylation of cysteine-347. Biochemistry. 25: 36-40. PMID 3082355 DOI: 10.1021/Bi00349A006  0.705
1985 Martin CT, Scholes CP, Chan SI. The identification of histidine ligands to cytochrome a in cytochrome c oxidase. The Journal of Biological Chemistry. 260: 2857-61. PMID 2982841  0.457
1983 Chan SI, Blair DF, Martin CT, Wang H, Gelles J, Morgan J, Witt S, Birge R, Stevens TH, Brudvig GW. The metal centers of cytochrome c oxidase: Structure and function Inorganica Chimica Acta. 79: 72-73. DOI: 10.1016/S0020-1693(00)95101-6  0.763
1983 Blair DF, Campbell GW, Lum V, Martin CT, Gray HB, Malmström BG, Chan SI. A resonance raman investigation of perturbed states of tree and fungal laccase Journal of Inorganic Biochemistry. 19: 65-73. DOI: 10.1016/0162-0134(83)85013-2  0.525
1982 Stevens TH, Martin CT, Wang H, Brudvig GW, Scholes CP, Chan SI. The nature of CuA in cytochrome c oxidase. The Journal of Biological Chemistry. 257: 12106-13. PMID 6288707  0.682
1982 Blair DF, Martin CT, Gelles J, Wang H, Brudvig GW, Stevens TH, Chan SI. METAL CENTERS OF CYTOCHROME c OXIDASE: STRUCTURES AND INTERACTIONS Chemica Scripta. 21: 43-53.  0.661
1981 Martin CT, Morse RH, Kanne RM, Gray HB, Malmström BG, Chan SI. Reactions of nitric oxide with tree and fungal laccase. Biochemistry. 20: 5147-55. PMID 6271178 DOI: 10.1021/Bi00521A008  0.696
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