Andrew Magee

Affiliations: 
2016-2021 University of Washington, Seattle, Seattle, WA 
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"Andrew Magee"

Parents

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Brian R. Moore research assistant 2015-2016 UC Davis
Adam Leaché grad student 2016-2021 University of Washington
Marc A. Suchard post-doc 2021- UCLA (MathTree)
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Publications

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Magee AF, Holbrook AJ, Pekar JE, et al. (2024) Random-effects substitution models for phylogenetics via scalable gradient approximations. Systematic Biology
Magee A, Karcher M, Matsen FA, et al. (2024) How Trustworthy Is Your Tree? Bayesian Phylogenetic Effective Sample Size Through the Lens of Monte Carlo Error. Bayesian Analysis. 19: 565-593
Shao Y, Magee AF, Vasylyeva TI, et al. (2024) Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. Plos Computational Biology. 20: e1011640
Didier G, Glatt-Holtz NE, Holbrook AJ, et al. (2024) On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America. 121: e2318989121
Shao Y, Magee AF, Vasylyeva TI, et al. (2023) Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. Biorxiv : the Preprint Server For Biology
McBride DS, Garushyants SK, Franks J, et al. (2023) Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer. Nature Communications. 14: 5105
Pekar JE, Lytras S, Ghafari M, et al. (2023) The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2. Biorxiv : the Preprint Server For Biology
Magee AF, Holbrook AJ, Pekar JE, et al. (2023) Random-effects substitution models for phylogenetics via scalable gradient approximations. Arxiv
McBride D, Garushyants S, Franks J, et al. (2023) Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer. Research Square
Kopperud BT, Magee AF, Höhna S. (2023) Rapidly changing speciation and extinction rates can be inferred in spite of nonidentifiability. Proceedings of the National Academy of Sciences of the United States of America. 120: e2208851120
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