Andrew Magee
Affiliations: | 2016-2021 | University of Washington, Seattle, Seattle, WA |
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"Andrew Magee"Parents
Sign in to add mentor| Brian R. Moore | research assistant | 2015-2016 | UC Davis |
| Adam Leaché | grad student | 2016-2021 | University of Washington |
| Marc A. Suchard | post-doc | 2021- | UCLA (MathTree) |
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Publications
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| Parker E, Omah IF, Varilly P, et al. (2024) Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans. Medrxiv : the Preprint Server For Health Sciences |
| Djuicy DD, Omah IF, Parker E, et al. (2024) Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa. Medrxiv : the Preprint Server For Health Sciences |
| Magee AF, Holbrook AJ, Pekar JE, et al. (2024) Random-effects substitution models for phylogenetics via scalable gradient approximations. Systematic Biology |
| Magee A, Karcher M, Matsen FA, et al. (2024) How Trustworthy Is Your Tree? Bayesian Phylogenetic Effective Sample Size Through the Lens of Monte Carlo Error. Bayesian Analysis. 19: 565-593 |
| Shao Y, Magee AF, Vasylyeva TI, et al. (2024) Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. Plos Computational Biology. 20: e1011640 |
| Didier G, Glatt-Holtz NE, Holbrook AJ, et al. (2024) On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America. 121: e2318989121 |
| Shao Y, Magee AF, Vasylyeva TI, et al. (2023) Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. Biorxiv : the Preprint Server For Biology |
| McBride DS, Garushyants SK, Franks J, et al. (2023) Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer. Nature Communications. 14: 5105 |
| Pekar JE, Lytras S, Ghafari M, et al. (2023) The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2. Biorxiv : the Preprint Server For Biology |
| Magee AF, Holbrook AJ, Pekar JE, et al. (2023) Random-effects substitution models for phylogenetics via scalable gradient approximations. Arxiv |