| Year |
Citation |
Score |
| 2024 |
Parker E, Omah IF, Varilly P, Magee A, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Tomkins-Tinch CH, Otieno JR, Akanbi O, Egwuenu A, et al. Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans. Medrxiv : the Preprint Server For Health Sciences. PMID 38947052 DOI: 10.1101/2024.06.18.24309104 |
0.469 |
|
| 2024 |
Djuicy DD, Omah IF, Parker E, Tomkins-Tinch CH, Otieno JR, Yifomnjou MHM, Essengue LLM, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Yonga MGW, ... ... Magee A, et al. Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa. Medrxiv : the Preprint Server For Health Sciences. PMID 38947021 DOI: 10.1101/2024.06.18.24309115 |
0.459 |
|
| 2024 |
Magee AF, Holbrook AJ, Pekar JE, Caviedes-Solis IW, Matsen Iv FA, Baele G, Wertheim JO, Ji X, Lemey P, Suchard MA. Random-effects substitution models for phylogenetics via scalable gradient approximations. Systematic Biology. PMID 38712512 DOI: 10.1093/sysbio/syae019 |
0.705 |
|
| 2024 |
Magee A, Karcher M, Matsen FA, Minin VM. How Trustworthy Is Your Tree? Bayesian Phylogenetic Effective Sample Size Through the Lens of Monte Carlo Error. Bayesian Analysis. 19: 565-593. PMID 38665694 DOI: 10.1214/22-ba1339 |
0.542 |
|
| 2024 |
Shao Y, Magee AF, Vasylyeva TI, Suchard MA. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. Plos Computational Biology. 20: e1011640. PMID 38551979 DOI: 10.1371/journal.pcbi.1011640 |
0.628 |
|
| 2024 |
Didier G, Glatt-Holtz NE, Holbrook AJ, Magee AF, Suchard MA. On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America. 121: e2318989121. PMID 38215186 DOI: 10.1073/pnas.2318989121 |
0.548 |
|
| 2023 |
Shao Y, Magee AF, Vasylyeva TI, Suchard MA. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. Biorxiv : the Preprint Server For Biology. PMID 37961423 DOI: 10.1101/2023.10.31.564882 |
0.628 |
|
| 2023 |
McBride DS, Garushyants SK, Franks J, Magee AF, Overend SH, Huey D, Williams AM, Faith SA, Kandeil A, Trifkovic S, Miller L, Jeevan T, Patel A, Nolting JM, Tonkovich MJ, et al. Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer. Nature Communications. 14: 5105. PMID 37640694 DOI: 10.1038/s41467-023-40706-y |
0.508 |
|
| 2023 |
Pekar JE, Lytras S, Ghafari M, Magee AF, Parker E, Havens JL, Katzourakis A, Vasylyeva TI, Suchard MA, Hughes AC, Hughes J, Robertson DL, Dellicour S, Worobey M, Wertheim JO, et al. The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2. Biorxiv : the Preprint Server For Biology. PMID 37502985 DOI: 10.1101/2023.07.12.548617 |
0.497 |
|
| 2023 |
Magee AF, Holbrook AJ, Pekar JE, Caviedes-Solis IW, Iv FAM, Baele G, Wertheim JO, Ji X, Lemey P, Suchard MA. Random-effects substitution models for phylogenetics via scalable gradient approximations. Arxiv. PMID 36994154 |
0.705 |
|
| 2023 |
McBride D, Garushyants S, Franks J, Magee A, Overend S, Huey D, Williams A, Faith S, Kandeil A, Trifkovic S, Miller L, Jeevan T, Patel A, Nolting J, Tonkovich M, et al. Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer. Research Square. PMID 36824718 DOI: 10.21203/rs.3.rs-2574993/v1 |
0.491 |
|
| 2023 |
Kopperud BT, Magee AF, Höhna S. Rapidly changing speciation and extinction rates can be inferred in spite of nonidentifiability. Proceedings of the National Academy of Sciences of the United States of America. 120: e2208851120. PMID 36757894 DOI: 10.1073/pnas.2208851120 |
0.377 |
|
| 2022 |
Hassler GW, Magee A, Zhang Z, Baele G, Lemey P, Ji X, Fourment M, Suchard MA. Data integration in Bayesian phylogenetics. Annual Review of Statistics and Its Application. 10: 353-377. PMID 38774036 DOI: 10.1146/annurev-statistics-033021-112532 |
0.631 |
|
| 2022 |
Pekar JE, Magee A, Parker E, Moshiri N, Izhikevich K, Havens JL, Gangavarapu K, Malpica Serrano LM, Crits-Christoph A, Matteson NL, Zeller M, Levy JI, Wang JC, Hughes S, Lee J, et al. The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2. Science (New York, N.Y.). eabp8337. PMID 35881005 DOI: 10.1126/science.abp8337 |
0.468 |
|
| 2021 |
Magee AF, Hilton SK, DeWitt WS. Robustness of phylogenetic inference to model misspecification caused by pairwise epistasis. Molecular Biology and Evolution. PMID 34043795 DOI: 10.1093/molbev/msab163 |
0.413 |
|
| 2020 |
Magee AF, Höhna S, Vasylyeva TI, Leaché AD, Minin VN. Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts. Plos Computational Biology. 16: e1007999. PMID 33112848 DOI: 10.1371/journal.pcbi.1007999 |
0.694 |
|
| 2020 |
Faulkner JR, Magee AF, Shapiro B, Minin VN. Rejoinder for discussion on "Horseshoe-based Bayesian nonparametric estimation of effective population size trajectories". Biometrics. PMID 32378741 DOI: 10.1111/Biom.13273 |
0.519 |
|
| 2020 |
Faulkner JR, Magee AF, Shapiro B, Minin VN. Horseshoe-based bayesian nonparametric estimation of effective population size trajectories. Biometrics. PMID 32277713 DOI: 10.1111/Biom.13276 |
0.626 |
|
| 2019 |
Fourment M, Magee AF, Whidden C, Bilge A, Matsen FA, Minin VN. 19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology. Systematic Biology. PMID 31504998 DOI: 10.1093/Sysbio/Syz046 |
0.627 |
|
| 2014 |
Magee AF, May MR, Moore BR. The dawn of open access to phylogenetic data. Plos One. 9: e110268. PMID 25343725 DOI: 10.1371/Journal.Pone.0110268 |
0.538 |
|
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