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Rachel Lockridge Mueller - Publications

Affiliations: 
2005 University of California, Berkeley, Berkeley, CA, United States 
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wang J, Yuan L, Tang J, Liu J, Sun C, Itgen MW, Chen G, Sessions SK, Zhang G, Mueller RL. Transposable element and host silencing activity in gigantic genomes. Frontiers in Cell and Developmental Biology. 11: 1124374. PMID 36910142 DOI: 10.3389/fcell.2023.1124374  0.732
2022 Haley AL, Mueller RL. Transposable Element Diversity Remains High in Gigantic Genomes. Journal of Molecular Evolution. PMID 35751655 DOI: 10.1007/s00239-022-10063-3  0.521
2022 Itgen MW, Natalie GR, Siegel DS, Sessions SK, Mueller RL. Genome size drives morphological evolution in organ-specific ways. Evolution; International Journal of Organic Evolution. PMID 35657770 DOI: 10.1111/evo.14519  0.721
2022 Adams AN, Denton RD, Mueller RL. Gigantic genomes of salamanders indicate that body temperature, not genome size, is the driver of global methylation and 5-methylcytosine deamination in vertebrates. Evolution; International Journal of Organic Evolution. PMID 35275604 DOI: 10.1111/evo.14468  0.407
2021 Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, ... ... Mueller RL, et al. Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 34015138 DOI: 10.1093/molbev/msab100  0.766
2020 Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, ... ... Mueller RL, et al. Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 32946576 DOI: 10.1093/Molbev/Msaa240  0.772
2020 Hime PM, Lemmon AR, Lemmon ECM, Prendini E, Brown JM, Thomson RC, Kratovil JD, Noonan BP, Pyron RA, Peloso PLV, Kortyna ML, Keogh JS, Donnellan SC, Mueller RL, Raxworthy CJ, et al. Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life. Systematic Biology. PMID 32359157 DOI: 10.1093/Sysbio/Syaa034  0.384
2018 Mueller RL, Jockusch EL. Jumping genomic gigantism. Nature Ecology & Evolution. 2: 1687-1688. PMID 30323209 DOI: 10.1038/S41559-018-0703-3  0.756
2017 Chong RA, Mueller RL. Polymorphic duplicate genes and persistent non-coding sequences reveal heterogeneous patterns of mitochondrial DNA loss in salamanders. Bmc Genomics. 18: 992. PMID 29281973 DOI: 10.1186/S12864-017-4358-2  0.403
2017 Mueller RL. piRNAs and Evolutionary Trajectories in Genome Size and Content. Journal of Molecular Evolution. PMID 29110026 DOI: 10.1007/S00239-017-9818-4  0.553
2017 Staub NL, Mueller RL. David Burton Wake Copeia. 105: 415-426. DOI: 10.1643/Ot-17-636  0.497
2016 Madison-Villar MJ, Sun C, Lau NC, Settles ML, Mueller RL. Erratum to: Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus. Journal of Molecular Evolution. PMID 27909757 DOI: 10.1007/s00239-016-9769-1  0.369
2016 Madison-Villar MJ, Sun C, Lau NC, Settles ML, Mueller RL. Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus. Journal of Molecular Evolution. PMID 27743003 DOI: 10.1007/S00239-016-9759-3  0.48
2016 Mohlhenrich ER, Mueller RL. Genetic drift and mutational hazard in the evolution of salamander genomic gigantism. Evolution; International Journal of Organic Evolution. PMID 27714793 DOI: 10.1111/Evo.13084  0.446
2015 Chen XG, Jiang X, Gu J, Xu M, Wu Y, Deng Y, Zhang C, Bonizzoni M, Dermauw W, Vontas J, Armbruster P, Huang X, Yang Y, Zhang H, He W, ... ... Mueller RL, et al. Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 26483478 DOI: 10.1073/Pnas.1516410112  0.604
2015 Mueller RL. Genome Biology and the Evolution of Cell-Size Diversity. Cold Spring Harbor Perspectives in Biology. 7. PMID 26254312 DOI: 10.1101/Cshperspect.A019125  0.506
2015 Sun C, Feschotte C, Wu Z, Mueller RL. DNA transposons have colonized the genome of the giant virus Pandoravirus salinus. Bmc Biology. 13: 38. PMID 26067596 DOI: 10.1186/S12915-015-0145-1  0.53
2015 Frahry MB, Sun C, Chong RA, Mueller RL. Low levels of LTR retrotransposon deletion by ectopic recombination in the gigantic genomes of salamanders. Journal of Molecular Evolution. 80: 120-9. PMID 25608479 DOI: 10.1007/S00239-014-9663-7  0.569
2014 Sun C, Mueller RL. Hellbender genome sequences shed light on genomic expansion at the base of crown salamanders. Genome Biology and Evolution. 6: 1818-29. PMID 25115007 DOI: 10.1093/Gbe/Evu143  0.585
2014 Sun C, Wyngaard G, Walton DB, Wichman HA, Mueller RL. Billions of basepairs of recently expanded, repetitive sequences are eliminated from the somatic genome during copepod development. Bmc Genomics. 15: 186. PMID 24618421 DOI: 10.1186/1471-2164-15-186  0.562
2013 Chong RA, Mueller RL. Evolution along the mutation gradient in the dynamic mitochondrial genome of salamanders. Genome Biology and Evolution. 5: 1652-60. PMID 23918809 DOI: 10.1093/Gbe/Evt119  0.493
2013 Chong RA, Mueller RL. Low metabolic rates in salamanders are correlated with weak selective constraints on mitochondrial genes. Evolution; International Journal of Organic Evolution. 67: 894-9. PMID 23461338 DOI: 10.1111/J.1558-5646.2012.01830.X  0.446
2013 Parrie LE, Renfrew EM, Wal AV, Mueller RL, Garrity DM. Zebrafish tbx5 paralogs demonstrate independent essential requirements in cardiac and pectoral fin development. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 242: 485-502. PMID 23441045 DOI: 10.1002/Dvdy.23953  0.309
2012 Sun C, López Arriaza JR, Mueller RL. Slow DNA loss in the gigantic genomes of salamanders. Genome Biology and Evolution. 4: 1340-8. PMID 23175715 DOI: 10.1093/Gbe/Evs103  0.575
2012 Sun C, Shepard DB, Chong RA, López Arriaza J, Hall K, Castoe TA, Feschotte C, Pollock DD, Mueller RL. LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders. Genome Biology and Evolution. 4: 168-83. PMID 22200636 DOI: 10.1093/Gbe/Evr139  0.617
2010 Schwartz RS, Mueller RL. Limited effects of among-lineage rate variation on the phylogenetic performance of molecular markers. Molecular Phylogenetics and Evolution. 54: 849-56. PMID 20045073 DOI: 10.1016/J.Ympev.2009.12.025  0.356
2009 Kuchta SR, Parks DS, Mueller RL, Wake DB. Closing the ring: Historical biogeography of the salamander ring species Ensatina eschscholtzii Journal of Biogeography. 36: 982-995. DOI: 10.1111/J.1365-2699.2008.02052.X  0.661
2008 Mueller RL, Gregory TR, Gregory SM, Hsieh A, Boore JL. Genome size, cell size, and the evolution of enucleated erythrocytes in attenuate salamanders. Zoology (Jena, Germany). 111: 218-30. PMID 18328681 DOI: 10.1016/J.Zool.2007.07.010  0.514
2007 Hurley IA, Mueller RL, Dunn KA, Schmidt EJ, Friedman M, Ho RK, Prince VE, Yang Z, Thomas MG, Coates MI. A new time-scale for ray-finned fish evolution. Proceedings. Biological Sciences / the Royal Society. 274: 489-98. PMID 17476768 DOI: 10.1098/Rspb.2006.3749  0.42
2006 Mueller RL. Evolutionary rates, divergence dates, and the performance of mitochondrial genes in Bayesian phylogenetic analysis. Systematic Biology. 55: 289-300. PMID 16611600 DOI: 10.1080/10635150500541672  0.467
2005 Mueller RL, Boore JL. Molecular mechanisms of extensive mitochondrial gene rearrangement in plethodontid salamanders. Molecular Biology and Evolution. 22: 2104-12. PMID 15987876 DOI: 10.1093/Molbev/Msi204  0.507
2005 Bonett RM, Mueller RL, Wake DB. Why should reaquisition of larval stages by desmognathine salamanders surprise us? Herpetological Review. 36: 112-113.  0.371
2004 Mueller RL, Macey JR, Jaekel M, Wake DB, Boore JL. Morphological homoplasy, life history evolution, and historical biogeography of plethodontid salamanders inferred from complete mitochondrial genomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 13820-5. PMID 15365171 DOI: 10.1073/Pnas.0405785101  0.644
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