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Ben-Yang Liao, Ph.D. - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
molecular and genomic evolution
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kuo HC, Yao CT, Liao BY, Weng MP, Dong F, Hsu YC, Hung CM. Weak gene-gene interaction facilitates the evolution of gene expression plasticity. Bmc Biology. 21: 57. PMID 36941675 DOI: 10.1186/s12915-023-01558-6  0.378
2023 Negi A, Liao BY, Yeh SD. Long-read-based Genome Assembly of Drosophila gunungcola Reveals Fewer Chemosensory Genes in Flower-breeding Species. Genome Biology and Evolution. 15. PMID 36930539 DOI: 10.1093/gbe/evad048  0.33
2020 Lu MR, Lai CK, Liao BY, Tsai IJ. Comparative transcriptomics across nematode life cycles reveal gene expression conservation and correlated evolution in adjacent developmental stages. Genome Biology and Evolution. PMID 32467980 DOI: 10.1093/Gbe/Evaa110  0.334
2020 Chiang CY, Ching YH, Chang TY, Hu LS, Yong YS, Keak PY, Mustika I, Lin MD, Liao BY. Novel eye genes systematically discovered through an integrated analysis of mouse transcriptomes and phenome. Computational and Structural Biotechnology Journal. 18: 73-82. PMID 31934309 DOI: 10.1016/J.Csbj.2019.12.009  0.474
2020 Chang AY, Liao BY. Reduced translational efficiency of eukaryotic genes after duplication events. Molecular Biology and Evolution. PMID 31904835 DOI: 10.1093/Molbev/Msz309  0.531
2017 Chang AY, Liao BY. Recruitment of histone modifications to assist mRNA dosage maintenance after degeneration of cytosine DNA methylation during animal evolution. Genome Research. PMID 28720579 DOI: 10.1101/Gr.221739.117  0.398
2017 Weng MP, Liao BY. modPhEA: model organism Phenotype Enrichment Analysis of eukaryotic gene sets. Bioinformatics (Oxford, England). PMID 28666356 DOI: 10.1093/Bioinformatics/Btx426  0.423
2016 Hsu CH, Chiang AW, Hwang MJ, Liao BY. Proteins with highly evolvable domain architectures are non-essential but highly retained. Molecular Biology and Evolution. PMID 26769031 DOI: 10.1093/Molbev/Msw006  0.355
2016 Liao BY, Weng MP. Functionalities of expressed messenger RNAs revealed from mutant phenotypes. Wiley Interdisciplinary Reviews. Rna. PMID 26748449 DOI: 10.1002/Wrna.1329  0.429
2015 Wang Z, Cheng K, Wan L, Yan L, Jiang H, Liu S, Lei Y, Liao B. Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes. Bmc Genomics. 16: 1053. PMID 26651343 DOI: 10.1186/s12864-015-2258-x  0.395
2015 Wang H, Lei Y, Yan L, Cheng K, Dai X, Wan L, Guo W, Cheng L, Liao B. Deep sequencing analysis of transcriptomes in Aspergillus flavus in response to resveratrol. Bmc Microbiology. 15: 182. PMID 26420172 DOI: 10.1186/s12866-015-0513-6  0.34
2015 Chen S, Lei Y, Xu X, Huang J, Jiang H, Wang J, Cheng Z, Zhang J, Song Y, Liao B, Li Y. The Peanut (Arachis hypogaea L.) Gene AhLPAT2 Increases the Lipid Content of Transgenic Arabidopsis Seeds. Plos One. 10: e0136170. PMID 26302041 DOI: 10.1371/journal.pone.0136170  0.442
2015 Wu R, Wu C, Liu D, Yang X, Huang J, Zhang J, Liao B, He H, Li H. Overview of Antioxidant Peptides Derived from Marine Resources: The Sources, Characteristic, Purification, and Evaluation Methods. Applied Biochemistry and Biotechnology. PMID 26041057 DOI: 10.1007/s12010-015-1689-9  0.323
2015 Liao BY, Weng MP. Unraveling the association between mRNA expressions and mutant phenotypes in a genome-wide assessment of mice. Proceedings of the National Academy of Sciences of the United States of America. 112: 4707-12. PMID 25825715 DOI: 10.1073/Pnas.1415046112  0.474
2015 Xie LJ, Chen QF, Chen MX, Yu LJ, Huang L, Chen L, Wang FZ, Xia FN, Zhu TR, Wu JX, Yin J, Liao B, Shi J, Zhang JH, Aharoni A, et al. Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis. Plos Genetics. 11: e1005143. PMID 25822663 DOI: 10.1371/Journal.Pgen.1005143  0.368
2015 Yu J, Ke T, Tehrim S, Sun F, Liao B, Hua W. PTGBase: an integrated database to study tandem duplicated genes in plants. Database : the Journal of Biological Databases and Curation. 2015. PMID 25797062 DOI: 10.1093/database/bav017  0.378
2015 Ma N, Shan Y, Liao B, Kong G, Wang C, Huang K, Zhang H, Cai X, Chen S, Pei D, Chen N, Pan G. Factor-induced Reprogramming and Zinc Finger Nuclease-aided Gene Targeting Cause Different Genome Instability in β-Thalassemia Induced Pluripotent Stem Cells (iPSCs). The Journal of Biological Chemistry. 290: 12079-89. PMID 25795783 DOI: 10.1074/Jbc.M114.624999  0.313
2015 Zhang J, Li J, Huang Z, Yang B, Zhang X, Li D, Craik DJ, Baker AJ, Shu W, Liao B. Transcriptomic screening for cyclotides and other cysteine-rich proteins in the metallophyte Viola baoshanensis. Journal of Plant Physiology. 178: 17-26. PMID 25756919 DOI: 10.1016/J.Jplph.2015.01.017  0.477
2014 Liao BY, Chang A. Accumulation of CTCF-binding sites drives expression divergence between tandemly duplicated genes in humans. Bmc Genomics. 15: S8. PMID 24564680 DOI: 10.1186/1471-2164-15-S1-S8  0.497
2013 Chang TY, Liao BY. Flagellated algae protein evolution suggests the prevalence of lineage-specific rules governing evolutionary rates of eukaryotic proteins. Genome Biology and Evolution. 5: 913-22. PMID 23563973 DOI: 10.1093/Gbe/Evt055  0.43
2013 Chen DH, Chang AY, Liao BY, Yeang CH. Functional characterization of motif sequences under purifying selection. Nucleic Acids Research. 41: 2105-20. PMID 23303791 DOI: 10.1093/Nar/Gks1456  0.447
2012 Liao BY, Weng MP. Natural selection drives rapid evolution of mouse embryonic heart enhancers. Bmc Systems Biology. 6: S1. PMID 23281795 DOI: 10.1186/1752-0509-6-S2-S1  0.425
2012 Shiao MS, Chang AY, Liao BY, Ching YH, Lu MY, Chen SM, Li WH. Transcriptomes of mouse olfactory epithelium reveal sexual differences in odorant detection. Genome Biology and Evolution. 4: 703-12. PMID 22511034 DOI: 10.1093/Gbe/Evs039  0.428
2012 Chen FC, Liao BY, Pan CL, Lin HY, Chang AY. Assessing determinants of exonic evolutionary rates in mammals. Molecular Biology and Evolution. 29: 3121-9. PMID 22504521 DOI: 10.1093/Molbev/Mss116  0.363
2012 Yang JR, Liao BY, Zhuang SM, Zhang J. Protein misinteraction avoidance causes highly expressed proteins to evolve slowly. Proceedings of the National Academy of Sciences of the United States of America. 109: E831-40. PMID 22416125 DOI: 10.1073/pnas.1117408109  0.626
2012 Liao BY, Chang AY. Mammalian genes preferentially co-retained in radiation hybrid panels tend to avoid coexpression. Plos One. 7: e32284. PMID 22384204 DOI: 10.1371/Journal.Pone.0032284  0.483
2012 Chang AY, Liao BY. DNA methylation rebalances gene dosage after mammalian gene duplications. Molecular Biology and Evolution. 29: 133-44. PMID 21821837 DOI: 10.1093/Molbev/Msr174  0.487
2011 Weng MP, Liao BY. DroPhEA: Drosophila phenotype enrichment analysis for insect functional genomics. Bioinformatics (Oxford, England). 27: 3218-9. PMID 21976423 DOI: 10.1093/Bioinformatics/Btr530  0.405
2011 Chen CH, Liao BY, Chen FC. Exploring the selective constraint on the sizes of insertions and deletions in 5' untranslated regions in mammals. Bmc Evolutionary Biology. 11: 192. PMID 21726469 DOI: 10.1186/1471-2148-11-192  0.339
2010 Wang Z, Liao BY, Zhang J. Genomic patterns of pleiotropy and the evolution of complexity. Proceedings of the National Academy of Sciences of the United States of America. 107: 18034-9. PMID 20876104 DOI: 10.1073/pnas.1004666107  0.538
2010 Qian W, Liao BY, Chang AY, Zhang J. Maintenance of duplicate genes and their functional redundancy by reduced expression. Trends in Genetics : Tig. 26: 425-30. PMID 20708291 DOI: 10.1016/J.Tig.2010.07.002  0.644
2010 Weng MP, Liao BY. MamPhEA: a web tool for mammalian phenotype enrichment analysis. Bioinformatics (Oxford, England). 26: 2212-3. PMID 20605928 DOI: 10.1093/Bioinformatics/Btq359  0.389
2010 Liao BY, Weng MP, Zhang J. Contrasting genetic paths to morphological and physiological evolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 7353-8. PMID 20368429 DOI: 10.1073/pnas.0910339107  0.559
2010 Liao BY, Weng MP, Zhang J. Impact of extracellularity on the evolutionary rate of mammalian proteins. Genome Biology and Evolution. 2: 39-43. PMID 20333223 DOI: 10.1093/gbe/evp058  0.495
2009 Chen CH, Chuang TJ, Liao BY, Chen FC. Scanning for the signatures of positive selection for human-specific insertions and deletions. Genome Biology and Evolution. 1: 415-9. PMID 20333210 DOI: 10.1093/Gbe/Evp041  0.359
2008 Liao BY, Zhang J. Null mutations in human and mouse orthologs frequently result in different phenotypes. Proceedings of the National Academy of Sciences of the United States of America. 105: 6987-92. PMID 18458337 DOI: 10.1073/Pnas.0800387105  0.623
2008 Liao BY, Zhang J. Coexpression of linked genes in Mammalian genomes is generally disadvantageous. Molecular Biology and Evolution. 25: 1555-65. PMID 18440951 DOI: 10.1093/Molbev/Msn101  0.615
2008 Shiao MS, Liao BY, Long M, Yu HT. Adaptive evolution of the insulin two-gene system in mouse. Genetics. 178: 1683-91. PMID 18245324 DOI: 10.1534/Genetics.108.087023  0.416
2007 Liao BY, Zhang J. Mouse duplicate genes are as essential as singletons. Trends in Genetics : Tig. 23: 378-81. PMID 17559966 DOI: 10.1016/j.tig.2007.05.006  0.546
2006 Liao BY, Scott NM, Zhang J. Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins. Molecular Biology and Evolution. 23: 2072-80. PMID 16887903 DOI: 10.1093/Molbev/Msm043  0.61
2006 Liao BY, Zhang J. Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution. Molecular Biology and Evolution. 23: 1119-28. PMID 16520335 DOI: 10.1093/molbev/msj119  0.58
2006 Liao BY, Zhang J. Evolutionary conservation of expression profiles between human and mouse orthologous genes. Molecular Biology and Evolution. 23: 530-40. PMID 16280543 DOI: 10.1093/molbev/msj054  0.56
2004 Liao BY, Chang YJ, Ho JM, Hwang MJ. The UniMarker (UM) method for synteny mapping of large genomes. Bioinformatics (Oxford, England). 20: 3156-65. PMID 15217808 DOI: 10.1093/Bioinformatics/Bth380  0.312
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