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Omar E. Cornejo, PhD - Publications

Affiliations: 
Genetics Stanford University, Palo Alto, CA 
Area:
population genetics and evolutionary biology
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 León F, Pizarro E, Noll D, Pertierra LR, Parker P, Espinaze MPA, Luna-Jorquera G, Simeone A, Frere E, Dantas G, Cristofari R, Cornejo OE, Bowie RCK, Vianna JA. Comparative genomics supports ecologically induced selection as a putative driver of banded penguin diversification. Molecular Biology and Evolution. PMID 39150953 DOI: 10.1093/molbev/msae166  0.351
2023 Pawar H, Rymbekova A, Cuadros-Espinoza S, Huang X, de Manuel M, van der Valk T, Lobon I, Alvarez-Estape M, Haber M, Dolgova O, Han S, Esteller-Cucala P, Juan D, Ayub Q, Bautista R, ... ... Cornejo OE, et al. Ghost admixture in eastern gorillas. Nature Ecology & Evolution. PMID 37500909 DOI: 10.1038/s41559-023-02145-2  0.311
2023 Juan D, Santpere G, Kelley JL, Cornejo OE, Marques-Bonet T. Current advances in primate genomics: novel approaches for understanding evolution and disease. Nature Reviews. Genetics. PMID 36599936 DOI: 10.1038/s41576-022-00554-w  0.304
2020 Schwarzkopf EJ, Motamayor JC, Cornejo OE. Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations. Bmc Genomics. 21: 332. PMID 32349675 DOI: 10.1186/S12864-020-6746-2  0.449
2019 Osorio-Guarín JA, Garzón-Martínez GA, Delgadillo-Duran P, Bastidas S, Moreno LP, Enciso-Rodríguez FE, Cornejo OE, Barrero LS. Genome-wide association study (GWAS) for morphological and yield-related traits in an oil palm hybrid (Elaeis oleifera x Elaeis guineensis) population. Bmc Plant Biology. 19: 533. PMID 31795941 DOI: 10.1186/S12870-019-2153-8  0.304
2018 Cornejo OE, Yee MC, Dominguez V, Andrews M, Sockell A, Strandberg E, Livingstone D, Stack C, Romero A, Umaharan P, Royaert S, Tawari NR, Ng P, Gutierrez O, Phillips W, et al. Population genomic analyses of the chocolate tree, L., provide insights into its domestication process. Communications Biology. 1: 167. PMID 30345393 DOI: 10.1038/s42003-018-0168-6  0.351
2018 Osorio-Guarín JA, Quackenbush CR, Cornejo OE. Ancestry informative alleles captured with reduced representation library sequencing in Theobroma cacao. Plos One. 13: e0203973. PMID 30332408 DOI: 10.1371/Journal.Pone.0203973  0.373
2018 Xia C, Wang M, Yin C, Cornejo OE, Hulbert SH, Chen X. Genomic insights into host adaptation between the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei). Bmc Genomics. 19: 664. PMID 30208837 DOI: 10.1186/S12864-018-5041-Y  0.363
2018 Xia C, Wang M, Yin C, Cornejo OE, Hulbert S, Chen X. Genome sequence resources for the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei). Molecular Plant-Microbe Interactions : Mpmi. PMID 29792772 DOI: 10.1094/Mpmi-04-18-0107-A  0.374
2018 Cornejo OE, Hickey RJ, Suzuki H, Forney LJ. Focusing the diversity of through the lens of ecotypes. Evolutionary Applications. 11: 312-324. PMID 29632552 DOI: 10.1111/Eva.12555  0.434
2017 Xia C, Wang M, Cornejo OE, Jiwan DA, See DR, Chen X. Secretome Characterization and Correlation Analysis Reveal Putative Pathogenicity Mechanisms and Identify Candidate Avirulence Genes in the Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici. Frontiers in Microbiology. 8: 2394. PMID 29312156 DOI: 10.3389/Fmicb.2017.02394  0.421
2017 Livingstone D, Stack C, Mustiga GM, Rodezno DC, Suarez C, Amores F, Feltus FA, Mockaitis K, Cornejo OE, Motamayor JC. A Larger Chocolate Chip-Development of a 15K Theobroma cacao L. SNP Array to Create High-Density Linkage Maps. Frontiers in Plant Science. 8: 2008. PMID 29259608 DOI: 10.3389/Fpls.2017.02008  0.389
2017 Miller EL, Evans BA, Cornejo OE, Roberts IS, Rozen DE. Pherotype Polymorphism in Streptococcus pneumoniae Has No Obvious Effects on Population Structure and Recombination. Genome Biology and Evolution. 9: 2546-2559. PMID 28992304 DOI: 10.1093/Gbe/Evx188  0.462
2017 McManus KF, Taravella AM, Henn BM, Bustamante CD, Sikora M, Cornejo OE. Population genetic analysis of the DARC locus (Duffy) reveals adaptation from standing variation associated with malaria resistance in humans. Plos Genetics. 13: e1006560. PMID 28282382 DOI: 10.1371/Journal.Pgen.1006560  0.439
2016 Jaimes YY, Gonzalez C, Rojas J, Cornejo OE, Mideros MF, Restrepo S, Cilas C, Furtado EL. Geographic Differentiation and Population Genetic Structure of Moniliophthora roreri in the Principal Cocoa Production Areas in Colombia. Plant Disease. 100: 1548-1558. PMID 30686241 DOI: 10.1094/Pdis-12-15-1498-Re  0.439
2016 Chaurio RA, Pacheco MA, Cornejo OE, Durrego E, Stanley CE, Castillo AI, Herrera S, Escalante AA. Evolution of the Transmission-Blocking Vaccine Candidates Pvs28 and Pvs25 in Plasmodium vivax: Geographic Differentiation and Evidence of Positive Selection. Plos Neglected Tropical Diseases. 10: e0004786. PMID 27347876 DOI: 10.1371/Journal.Pntd.0004786  0.412
2016 Cooke TF, Yee MC, Muzzio M, Sockell A, Bell R, Cornejo OE, Kelley JL, Bailliet G, Bravi CM, Bustamante CD, Kenny EE. GBStools: A Statistical Method for Estimating Allelic Dropout in Reduced Representation Sequencing Data. Plos Genetics. 12: e1005631. PMID 26828719 DOI: 10.1371/Journal.Pgen.1005631  0.446
2015 Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, ... Cornejo OE, et al. Genomic evidence for the Pleistocene and recent population history of Native Americans. Science (New York, N.Y.). PMID 26198033 DOI: 10.1126/Science.Aab3884  0.412
2015 Cornejo OE, Fisher D, Escalante AA. Genome-wide patterns of genetic polymorphism and signatures of selection in Plasmodium vivax. Genome Biology and Evolution. 7: 106-19. PMID 25523904 DOI: 10.1093/Gbe/Evu267  0.462
2014 Raghavan M, DeGiorgio M, Albrechtsen A, Moltke I, Skoglund P, Korneliussen TS, Grønnow B, Appelt M, Gulløv HC, Friesen TM, Fitzhugh W, Malmström H, Rasmussen S, Olsen J, Melchior L, ... ... Cornejo OE, et al. The genetic prehistory of the New World Arctic. Science (New York, N.Y.). 345: 1255832. PMID 25170159 DOI: 10.1126/Science.1255832  0.45
2014 Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford TW, Rasmussen S, Moltke I, Albrechtsen A, Doyle SM, Poznik GD, Gudmundsdottir V, Yadav R, Malaspinas AS, White SS, ... ... Cornejo OE, et al. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature. 506: 225-9. PMID 24522598 DOI: 10.1038/Nature13025  0.406
2013 Pepperell CS, Casto AM, Kitchen A, Granka JM, Cornejo OE, Holmes EC, Holmes EC, Birren B, Galagan J, Feldman MW. The role of selection in shaping diversity of natural M. tuberculosis populations. Plos Pathogens. 9: e1003543. PMID 23966858 DOI: 10.1371/Journal.Ppat.1003543  0.408
2013 Utro F, Haiminen N, Livingstone D, Cornejo OE, Royaert S, Schnell RJ, Motamayor JC, Kuhn DN, Parida L. iXora: exact haplotype inferencing and trait association. Bmc Genetics. 14: 48. PMID 23742238 DOI: 10.1186/1471-2156-14-48  0.35
2013 Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Livingstone D, Cornejo O, Findley SD, Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biology. 14: r53. PMID 23731509 DOI: 10.1186/Gb-2013-14-6-R53  0.38
2013 Cornejo OE, Lefébure T, Bitar PD, Lang P, Richards VP, Eilertson K, Do T, Beighton D, Zeng L, Ahn SJ, Burne RA, Siepel A, Bustamante CD, Stanhope MJ. Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans. Molecular Biology and Evolution. 30: 881-93. PMID 23228887 DOI: 10.1093/Molbev/Mss278  0.48
2013 Pepperell CS, Casto AM, Kitchen A, Granka JM, Cornejo OE, Holmes EC, Birren B, Galagan J, Feldman MW. Correction: The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations Plos Pathogens. 9. DOI: 10.1371/Annotation/Cff22061-44D5-4301-B853-41702D160203  0.338
2012 Utro F, Cornejo OE, Livingstone D, Motamayor JC, Parida L. ARG-based genome-wide analysis of cacao cultivars. Bmc Bioinformatics. 13: S17. PMID 23281769 DOI: 10.1186/1471-2105-13-S19-S17  0.417
2011 Pacheco MA, Battistuzzi FU, Junge RE, Cornejo OE, Williams CV, Landau I, Rabetafika L, Snounou G, Jones-Engel L, Escalante AA. Timing the origin of human malarias: the lemur puzzle. Bmc Evolutionary Biology. 11: 299. PMID 21992100 DOI: 10.1186/1471-2148-11-299  0.339
2011 Dewey FE, Chen R, Cordero SP, Ormond KE, Caleshu C, Karczewski KJ, Whirl-Carrillo M, Wheeler MT, Dudley JT, Byrnes JK, Cornejo OE, Knowles JW, Woon M, Sangkuhl K, Gong L, et al. Phased whole-genome genetic risk in a family quartet using a major allele reference sequence. Plos Genetics. 7: e1002280. PMID 21935354 DOI: 10.1371/Journal.Pgen.1002280  0.374
2010 Krief S, Escalante AA, Pacheco MA, Mugisha L, André C, Halbwax M, Fischer A, Krief JM, Kasenene JM, Crandfield M, Cornejo OE, Chavatte JM, Lin C, Letourneur F, Grüner AC, et al. On the diversity of malaria parasites in African apes and the origin of Plasmodium falciparum from Bonobos. Plos Pathogens. 6: e1000765. PMID 20169187 DOI: 10.1371/Journal.Ppat.1000765  0.344
2010 Cornejo OE, McGee L, Rozen DE. Polymorphic competence peptides do not restrict recombination in Streptococcus pneumoniae. Molecular Biology and Evolution. 27: 694-702. PMID 19942613 DOI: 10.1093/Molbev/Msp287  0.438
2009 Levin BR, Cornejo OE. The population and evolutionary dynamics of homologous gene recombination in bacterial populations. Plos Genetics. 5: e1000601. PMID 19680442 DOI: 10.1371/Journal.Pgen.1000601  0.573
2009 Cornejo OE, Rozen DE, May RM, Levin BR. Oscillations in continuous culture populations of Streptococcus pneumoniae: population dynamics and the evolution of clonal suicide. Proceedings. Biological Sciences / the Royal Society. 276: 999-1008. PMID 19129121 DOI: 10.1098/Rspb.2008.1415  0.538
2006 Cornejo OE, Escalante AA. The origin and age of Plasmodium vivax. Trends in Parasitology. 22: 558-63. PMID 17035086 DOI: 10.1016/J.Pt.2006.09.007  0.404
2005 Escalante AA, Cornejo OE, Freeland DE, Poe AC, Durrego E, Collins WE, Lal AA. A monkey's tale: the origin of Plasmodium vivax as a human malaria parasite. Proceedings of the National Academy of Sciences of the United States of America. 102: 1980-5. PMID 15684081 DOI: 10.1073/Pnas.0409652102  0.459
2004 Escalante AA, Cornejo OE, Rojas A, Udhayakumar V, Lal AA. Assessing the effect of natural selection in malaria parasites. Trends in Parasitology. 20: 388-95. PMID 15246323 DOI: 10.1016/J.Pt.2004.06.002  0.316
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