Amy E. Pasquinelli - Publications

Affiliations: 
Biology w/Spec Bioinformatics University of California, San Diego, La Jolla, CA 
Area:
Molecular Biology, Genetics, Evolution and Development Biology

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 De-Souza EA, Camara H, Salgueiro WG, Moro RP, Knittel TL, Tonon G, Pinto S, Pinca APF, Antebi A, Pasquinelli AE, Massirer KB, Mori MA. RNA interference may result in unexpected phenotypes in Caenorhabditis elegans. Nucleic Acids Research. PMID 30838421 DOI: 10.1093/nar/gkz154  0.64
2017 Lima SA, Chipman LB, Nicholson AL, Chen YH, Yee BA, Yeo GW, Coller J, Pasquinelli AE. Short poly(A) tails are a conserved feature of highly expressed genes. Nature Structural & Molecular Biology. PMID 29106412 DOI: 10.1038/nsmb.3499  0.48
2016 Broughton JP, Lovci MT, Huang JL, Yeo GW, Pasquinelli AE. Pairing beyond the Seed Supports MicroRNA Targeting Specificity. Molecular Cell. PMID 27720646 DOI: 10.1016/j.molcel.2016.09.004  0.48
2016 Broughton JP, Pasquinelli AE. A tale of two sequences: microRNA-target chimeric reads. Genetics, Selection, Evolution : Gse. 48: 31. PMID 27044644 DOI: 10.1186/s12711-016-0209-x  1
2015 Mondol V, Ahn BC, Pasquinelli AE. Splicing remodels the let-7 primary microRNA to facilitate Drosha processing in Caenorhabditis elegans. Rna (New York, N.Y.). 21: 1396-403. PMID 26081559 DOI: 10.1261/rna.052118.115  1
2015 Pasquinelli AE. MicroRNAs: heralds of the noncoding RNA revolution. Rna (New York, N.Y.). 21: 709-10. PMID 25780202 DOI: 10.1261/rna.049981.115  1
2014 Van Wynsberghe PM, Pasquinelli AE. Period homolog LIN-42 regulates miRNA transcription to impact developmental timing. Worm. 3: e974453. PMID 26435883 DOI: 10.4161/21624054.2014.974453  0.52
2014 Lima SA, Pasquinelli AE. Identification of miRNAs and their targets in C. elegans. Advances in Experimental Medicine and Biology. 825: 431-50. PMID 25201113 DOI: 10.1007/978-1-4939-1221-6_12  1
2014 Fonslow BR, Moresco JJ, Tu PG, Aalto AP, Pasquinelli AE, Dillin AG, Yates JR. Mass spectrometry-based shotgun proteomic analysis of C. elegans protein complexes. Wormbook : the Online Review of C. Elegans Biology. 1-18. PMID 24967700 DOI: 10.1895/wormbook.1.171.1  1
2014 Van Wynsberghe PM, Finnegan EF, Stark T, Angelus EP, Homan KE, Yeo GW, Pasquinelli AE. The Period protein homolog LIN-42 negatively regulates microRNA biogenesis in C. elegans. Developmental Biology. 390: 126-35. PMID 24699545 DOI: 10.1016/j.ydbio.2014.03.017  1
2013 Massirer KB, Pasquinelli AE. MicroRNAs that interfere with RNAi. Worm. 2: e21835. PMID 24058860 DOI: 10.4161/worm.21835  0.64
2013 Pasquinelli AE. The primary target of let-7 microRNA. Biochemical Society Transactions. 41: 821-4. PMID 23863138 DOI: 10.1042/BST20130020  1
2013 Broughton JP, Pasquinelli AE. Identifying Argonaute binding sites in Caenorhabditis elegans using iCLIP. Methods (San Diego, Calif.). 63: 119-25. PMID 23583680 DOI: 10.1016/j.ymeth.2013.03.033  1
2013 Hunter SE, Finnegan EF, Zisoulis DG, Lovci MT, Melnik-Martinez KV, Yeo GW, Pasquinelli AE. Functional genomic analysis of the let-7 regulatory network in Caenorhabditis elegans. Plos Genetics. 9: e1003353. PMID 23516374 DOI: 10.1371/journal.pgen.1003353  1
2013 Kai ZS, Finnegan EF, Huang S, Pasquinelli AE. Multiple cis-elements and trans-acting factors regulate dynamic spatio-temporal transcription of let-7 in Caenorhabditis elegans. Developmental Biology. 374: 223-33. PMID 23201578 DOI: 10.1016/j.ydbio.2012.11.021  1
2013 Finnegan EF, Pasquinelli AE. MicroRNA biogenesis: regulating the regulators. Critical Reviews in Biochemistry and Molecular Biology. 48: 51-68. PMID 23163351 DOI: 10.3109/10409238.2012.738643  1
2012 Pasquinelli AE. Birthing histone mRNAs by CSR-1 section. The Embo Journal. 31: 3790-1. PMID 22960639 DOI: 10.1038/emboj.2012.254  1
2012 Zisoulis DG, Kai ZS, Chang RK, Pasquinelli AE. Autoregulation of microRNA biogenesis by let-7 and Argonaute. Nature. 486: 541-4. PMID 22722835 DOI: 10.1038/nature11134  1
2012 Aalto AP, Pasquinelli AE. Small non-coding RNAs mount a silent revolution in gene expression. Current Opinion in Cell Biology. 24: 333-40. PMID 22464106 DOI: 10.1016/j.ceb.2012.03.006  1
2012 Massirer KB, Perez SG, Mondol V, Pasquinelli AE. The miR-35-41 family of microRNAs regulates RNAi sensitivity in Caenorhabditis elegans. Plos Genetics. 8: e1002536. PMID 22412382 DOI: 10.1371/journal.pgen.1002536  1
2012 Pasquinelli AE. MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship. Nature Reviews. Genetics. 13: 271-82. PMID 22411466 DOI: 10.1038/nrg3162  1
2012 Mondol V, Pasquinelli AE. Let's make it happen: the role of let-7 microRNA in development. Current Topics in Developmental Biology. 99: 1-30. PMID 22365733 DOI: 10.1016/B978-0-12-387038-4.00001-X  1
2012 Pasquinelli AE. A team effort blocks the ribosome in its tracks. Nature Structural & Molecular Biology. 19: 133-4. PMID 22301874 DOI: 10.1038/nsmb.2236  1
2011 Van Wynsberghe PM, Chan SP, Slack FJ, Pasquinelli AE. Analysis of microRNA Expression and Function Methods in Cell Biology. 106: 219-252. PMID 22118279 DOI: 10.1016/B978-0-12-544172-8.00008-6  1
2011 Zisoulis DG, Yeo GW, Pasquinelli AE. Comprehensive identification of miRNA target sites in live animals. Methods in Molecular Biology (Clifton, N.J.). 732: 169-85. PMID 21431713 DOI: 10.1007/978-1-61779-083-6_13  1
2011 Van Wynsberghe PM, Kai ZS, Massirer KB, Burton VH, Yeo GW, Pasquinelli AE. LIN-28 co-transcriptionally binds primary let-7 to regulate miRNA maturation in Caenorhabditis elegans. Nature Structural & Molecular Biology. 18: 302-8. PMID 21297634 DOI: 10.1038/nsmb.1986  1
2010 Bracht JR, Van Wynsberghe PM, Mondol V, Pasquinelli AE. Regulation of lin-4 miRNA expression, organismal growth and development by a conserved RNA binding protein in C. elegans Developmental Biology. 348: 210-221. PMID 20937268 DOI: 10.1016/j.ydbio.2010.10.003  1
2010 Pasquinelli AE. Molecular biology. Paring miRNAs through pairing. Science (New York, N.Y.). 328: 1494-5. PMID 20558697 DOI: 10.1126/science.1191531  1
2010 Godshalk SE, Melnik-Martinez KV, Pasquinelli AE, Slack FJ. MicroRNAs and cancer: a meeting summary of the eponymous Keystone Conference. Epigenetics. 5: 164-8. PMID 20168081 DOI: 10.4161/epi.5.2.11162  1
2010 Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW. Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans. Nature Structural & Molecular Biology. 17: 173-9. PMID 20062054 DOI: 10.1038/nsmb.1745  1
2010 Kai Z, Pasquinelli AE. A genome wide view of hunchback-like-1 targets. Cell Cycle (Georgetown, Tex.). 9: 230-1. PMID 20061795  1
2010 Kai ZS, Pasquinelli AE. MicroRNA assassins: factors that regulate the disappearance of miRNAs. Nature Structural & Molecular Biology. 17: 5-10. PMID 20051982 DOI: 10.1038/nsmb.1762  1
2010 Hinton A, Afrikanova I, Wilson M, King CC, Maurer B, Yeo GW, Hayek A, Pasquinelli AE. A distinct microRNA signature for definitive endoderm derived from human embryonic stem cells. Stem Cells and Development. 19: 797-807. PMID 19807270 DOI: 10.1089/scd.2009.0224  1
2009 Holtz J, Pasquinelli AE. Uncoupling of lin-14 mRNA and protein repression by nutrient deprivation in Caenorhabditis elegans. Rna (New York, N.Y.). 15: 400-5. PMID 19155321 DOI: 10.1261/rna.1258309  1
2007 Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T. Computational prediction and experimental validation of Ciona intestinalis microRNA genes. Bmc Genomics. 8: 445. PMID 18047675 DOI: 10.1186/1471-2164-8-445  1
2007 Chendrimada TP, Finn KJ, Ji X, Baillat D, Gregory RI, Liebhaber SA, Pasquinelli AE, Shiekhattar R. MicroRNA silencing through RISC recruitment of eIF6. Nature. 447: 823-8. PMID 17507929 DOI: 10.1038/nature05841  1
2006 Pasquinelli AE. Demystifying small RNA pathways. Developmental Cell. 10: 419-24. PMID 16625708 DOI: 10.1016/j.devcel.2006.03.005  1
2006 Massirer KB, Pasquinelli AE. The evolving role of microRNAs in animal gene expression. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 28: 449-52. PMID 16615087 DOI: 10.1002/bies.20406  1
2006 Bagga S, Pasquinelli AE. Identification and analysis of microRNAs. Genetic Engineering. 27: 1-20. PMID 16382868  1
2005 Lancman JJ, Caruccio NC, Harfe BD, Pasquinelli AE, Schageman JJ, Pertsemlidis A, Fallon JF. Analysis of the regulation of lin-41 during chick and mouse limb development. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 234: 948-60. PMID 16245339 DOI: 10.1002/dvdy.20591  1
2005 Bagga S, Bracht J, Hunter S, Massirer K, Holtz J, Eachus R, Pasquinelli AE. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell. 122: 553-63. PMID 16122423 DOI: 10.1016/j.cell.2005.07.031  1
2005 Pasquinelli AE, Hunter S, Bracht J. MicroRNAs: a developing story. Current Opinion in Genetics & Development. 15: 200-5. PMID 15797203 DOI: 10.1016/j.gde.2005.01.002  1
2005 Pasquinelli AE. MicroRNAs: A small contribution from worms Rna Interference Technology: From Basic Science to Drug Development. 69-83. DOI: 10.1017/CBO9780511546402.007  1
2004 Mansfield JH, Harfe BD, Nissen R, Obenauer J, Srineel J, Chaudhuri A, Farzan-Kashani R, Zuker M, Pasquinelli AE, Ruvkun G, Sharp PA, Tabin CJ, McManus MT. MicroRNA-responsive 'sensor' transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression. Nature Genetics. 36: 1079-83. PMID 15361871 DOI: 10.1038/ng1421  1
2004 Bracht J, Hunter S, Eachus R, Weeks P, Pasquinelli AE. Trans-splicing and polyadenylation of let-7 microRNA primary transcripts. Rna (New York, N.Y.). 10: 1586-94. PMID 15337850 DOI: 10.1261/rna.7122604  1
2003 Pasquinelli AE, McCoy A, Jiménez E, Saló E, Ruvkun G, Martindale MQ, Baguñà J. Expression of the 22 nucleotide let-7 heterochronic RNA throughout the Metazoa: a role in life history evolution? Evolution & Development. 5: 372-8. PMID 12823453 DOI: 10.1046/j.1525-142X.2003.03044.x  1
2003 Bashirullah A, Pasquinelli AE, Kiger AA, Perrimon N, Ruvkun G, Thummel CS. Coordinate regulation of small temporal RNAs at the onset of Drosophila metamorphosis. Developmental Biology. 259: 1-8. PMID 12812783 DOI: 10.1016/S0012-1606(03)00063-0  1
2002 Pasquinelli AE, Ruvkun G. Control of developmental timing by micrornas and their targets. Annual Review of Cell and Developmental Biology. 18: 495-513. PMID 12142272 DOI: 10.1146/annurev.cellbio.18.012502.105832  1
2002 Pasquinelli AE. MicroRNAs: deviants no longer. Trends in Genetics : Tig. 18: 171-3. PMID 11932009 DOI: 10.1016/S0168-9525(01)02624-5  1
2001 Grishok A, Pasquinelli AE, Conte D, Li N, Parrish S, Ha I, Baillie DL, Fire A, Ruvkun G, Mello CC. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell. 106: 23-34. PMID 11461699 DOI: 10.1016/S0092-8674(01)00431-7  1
2001 Hutvágner G, McLachlan J, Pasquinelli AE, Bálint E, Tuschl T, Zamore PD. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science (New York, N.Y.). 293: 834-8. PMID 11452083 DOI: 10.1126/science.1062961  1
2000 Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, Maller B, Hayward DC, Ball EE, Degnan B, Müller P, Spring J, Srinivasan A, Fishman M, Finnerty J, Corbo J, et al. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature. 408: 86-9. PMID 11081512 DOI: 10.1038/35040556  1
1997 Pasquinelli AE, Powers MA, Lund E, Forbes D, Dahlberg JE. Inhibition of mRNA export in vertebrate cells by nuclear export signal conjugates. Proceedings of the National Academy of Sciences of the United States of America. 94: 14394-9. PMID 9405623 DOI: 10.1073/pnas.94.26.14394  1
1997 Pasquinelli AE, Ernst RK, Lund E, Grimm C, Zapp ML, Rekosh D, Hammarskjöld ML, Dahlberg JE. The constitutive transport element (CTE) of Mason-Pfizer monkey virus (MPMV) accesses a cellular mRNA export pathway. The Embo Journal. 16: 7500-10. PMID 9405378 DOI: 10.1093/emboj/16.24.7500  1
1995 Pasquinelli AE, Dahlberg JE, Lund E. Reverse 5' caps in RNAs made in vitro by phage RNA polymerases. Rna (New York, N.Y.). 1: 957-67. PMID 8548660  1
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