| Year |
Citation |
Score |
| 2023 |
Wilhelm RC, Amsili JP, Kurtz KSM, van Es HM, Buckley DH. Correction: Ecological insights into soil health according to the genomic traits and environment-wide associations of bacteria in agricultural soils. Isme Communications. 3: 35. PMID 37081196 DOI: 10.1038/s43705-023-00236-6 |
0.33 |
|
| 2023 |
Wilhelm RC, Amsili JP, Kurtz KSM, van Es HM, Buckley DH. Ecological insights into soil health according to the genomic traits and environment-wide associations of bacteria in agricultural soils. Isme Communications. 3: 1. PMID 37081121 DOI: 10.1038/s43705-022-00209-1 |
0.349 |
|
| 2023 |
Barnett SE, Egan R, Foster B, Eloe-Fadrosh EA, Buckley DH. Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing. Mbio. e0358422. PMID 36877031 DOI: 10.1128/mbio.03584-22 |
0.357 |
|
| 2023 |
Wilhelm RC, Muñoz-Ucros J, Weikl F, Pritsch K, Goebel M, Buckley DH, Bauerle TL. The effects of mixed-species root zones on the resistance of soil bacteria and fungi to long-term experimental and natural reductions in soil moisture. The Science of the Total Environment. 873: 162266. PMID 36822431 DOI: 10.1016/j.scitotenv.2023.162266 |
0.37 |
|
| 2022 |
Wilhelm RC, Barnett SE, Swenson TL, Youngblut ND, Koechli CN, Bowen BP, Northen TR, Buckley DH. Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil. Applied and Environmental Microbiology. e0083922. PMID 36300927 DOI: 10.1128/aem.00839-22 |
0.345 |
|
| 2022 |
Barnett SE, Youngblut ND, Buckley DH. Bacterial community dynamics explain carbon mineralization and assimilation in soils of different land-use history. Environmental Microbiology. PMID 35920035 DOI: 10.1111/1462-2920.16146 |
0.382 |
|
| 2022 |
Sridhar B, Lawrence GB, Debenport SJ, Fahey TJ, Buckley DH, Wilhelm RC, Goodale CL. Watershed-scale liming reveals the short- and long-term effects of pH on the forest soil microbiome and carbon cycling. Environmental Microbiology. PMID 35799501 DOI: 10.1111/1462-2920.16119 |
0.712 |
|
| 2022 |
Sridhar B, Wilhelm RC, Debenport SJ, Fahey TJ, Buckley DH, Goodale CL. Microbial community shifts correspond with suppression of decomposition 25 years after liming of acidic forest soils. Global Change Biology. PMID 35770362 DOI: 10.1111/gcb.16321 |
0.72 |
|
| 2022 |
Wang Y, Wilhelm RC, Swenson TL, Silver A, Andeer PF, Golini A, Kosina SM, Bowen BP, Buckley DH, Northen TR. Substrate Utilization and Competitive Interactions Among Soil Bacteria Vary With Life-History Strategies. Frontiers in Microbiology. 13: 914472. PMID 35756023 DOI: 10.3389/fmicb.2022.914472 |
0.342 |
|
| 2021 |
Wilhelm RC, DeRito CM, Shapleigh JP, Madsen EL, Buckley DH. Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil. Isme Communications. 1: 4. PMID 36717596 DOI: 10.1038/s43705-021-00009-z |
0.377 |
|
| 2021 |
Barnett SE, Youngblut ND, Koechli CN, Buckley DH. Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34799453 DOI: 10.1073/pnas.2115292118 |
0.332 |
|
| 2021 |
Liao J, Guo X, Weller DL, Pollak S, Buckley DH, Wiedmann M, Cordero OX. Nationwide genomic atlas of soil-dwelling Listeria reveals effects of selection and population ecology on pangenome evolution. Nature Microbiology. PMID 34267358 DOI: 10.1038/s41564-021-00935-7 |
0.318 |
|
| 2021 |
Wilhelm RC, Pepe-Ranney C, Weisenhorn P, Lipton M, Buckley DH. Competitive Exclusion and Metabolic Dependency among Microorganisms Structure the Cellulose Economy of an Agricultural Soil. Mbio. 12. PMID 33402535 DOI: 10.1128/mBio.03099-20 |
0.342 |
|
| 2021 |
Wilhelm RC, DeRito CM, Shapleigh JP, Madsen EL, Buckley DH. Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil Isme Communications. 1. DOI: 10.1038/S43705-021-00009-Z |
0.346 |
|
| 2020 |
Higgins SA, Panke-Buisse K, Buckley DH. The biogeography of Streptomyces in New Zealand enabled by high-throughput sequencing of genus-specific rpoB amplicons. Environmental Microbiology. PMID 33283920 DOI: 10.1111/1462-2920.15350 |
0.368 |
|
| 2020 |
Wilhelm RC, Cyle KT, Martinez CE, Karasz DC, Newman JD, Buckley DH. sp. nov. and sp. nov., phenolic acid-degrading bacteria isolated from forest soil and emended description of . International Journal of Systematic and Evolutionary Microbiology. PMID 32809929 DOI: 10.1099/Ijsem.0.004387 |
0.328 |
|
| 2020 |
Wilhelm RC, Murphy SJL, Feriancek NM, Karasz DC, DeRito CM, Newman JD, Buckley DH. sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil. International Journal of Systematic and Evolutionary Microbiology. PMID 32027304 DOI: 10.1099/Ijsem.0.004029 |
0.359 |
|
| 2020 |
Barnett SE, Buckley DH. Simulating metagenomic stable isotope probing datasets with MetaSIPSim. Bmc Bioinformatics. 21: 37. PMID 32000676 DOI: 10.1186/S12859-020-3372-6 |
0.321 |
|
| 2020 |
Kapili BJ, Barnett SE, Buckley DH, Dekas AE. Evidence for phylogenetically and catabolically diverse active diazotrophs in deep-sea sediment. The Isme Journal. PMID 31907368 DOI: 10.1038/S41396-019-0584-8 |
0.365 |
|
| 2020 |
Barnett SE, Youngblut ND, Buckley DH. Soil characteristics and land-use drive bacterial community assembly patterns. Fems Microbiology Ecology. 96. PMID 31834372 DOI: 10.1093/Femsec/Fiz194 |
0.49 |
|
| 2020 |
Zwetsloot MJ, Ucros JM, Wickings K, Wilhelm RC, Sparks J, Buckley DH, Bauerle TL. Prevalent root-derived phenolics drive shifts in microbial community composition and prime decomposition in forest soil Soil Biology and Biochemistry. 145: 107797. DOI: 10.1016/J.Soilbio.2020.107797 |
0.496 |
|
| 2019 |
Emmett BD, Buckley DH, Drinkwater LE. Plant growth rate and nitrogen uptake shape rhizosphere bacterial community composition and activity in an agricultural field. The New Phytologist. PMID 31487394 DOI: 10.1111/Nph.16171 |
0.414 |
|
| 2019 |
Drott MT, Debenport T, Higgins SA, Buckley DH, Milgroom MG. Fitness Cost of Aflatoxin Production in Aspergillus flavus When Competing with Soil Microbes Could Maintain Balancing Selection. Mbio. 10. PMID 30782658 DOI: 10.1128/Mbio.02782-18 |
0.46 |
|
| 2019 |
Koechli C, Campbell AN, Pepe-Ranney C, Buckley DH. Assessing fungal contributions to cellulose degradation in soil by using high-throughput stable isotope probing Soil Biology & Biochemistry. 130: 150-158. DOI: 10.1016/J.Soilbio.2018.12.013 |
0.444 |
|
| 2018 |
Sirois SH, Buckley DH. Factors governing extracellular DNA degradation dynamics in soil. Environmental Microbiology Reports. PMID 30507072 DOI: 10.1111/1758-2229.12725 |
0.466 |
|
| 2018 |
Jackson EW, Pepe-Ranney C, Debenport SJ, Buckley DH, Hewson I. The Microbial Landscape of Sea Stars and the Anatomical and Interspecies Variability of Their Microbiome. Frontiers in Microbiology. 9: 1829. PMID 30150973 DOI: 10.3389/Fmicb.2018.01829 |
0.355 |
|
| 2018 |
Choudoir MJ, Buckley DH. Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa. The Isme Journal. PMID 29880909 DOI: 10.1038/S41396-018-0180-3 |
0.35 |
|
| 2018 |
Youngblut ND, Barnett SE, Buckley DH. SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments. Frontiers in Microbiology. 9: 570. PMID 29643843 DOI: 10.3389/Fmicb.2018.00570 |
0.334 |
|
| 2018 |
Emmett BD, Buckley DH, Smith ME, Drinkwater LE. Eighty years of maize breeding alters plant nitrogen acquisition but not rhizosphere bacterial community composition Plant and Soil. 431: 53-69. DOI: 10.1007/S11104-018-3744-0 |
0.432 |
|
| 2017 |
Emmett BD, Youngblut ND, Buckley DH, Drinkwater LE. Plant Phylogeny and Life History Shape Rhizosphere Bacterial Microbiome of Summer Annuals in an Agricultural Field. Frontiers in Microbiology. 8: 2414. PMID 29321763 DOI: 10.3389/Fmicb.2017.02414 |
0.385 |
|
| 2017 |
Wilbanks EG, Salman-Carvalho V, Jaekel U, Humphrey PT, Eisen JA, Buckley DH, Zinder SH. The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria. Frontiers in Microbiology. 8: 1623. PMID 28928719 DOI: 10.3389/Fmicb.2017.01623 |
0.334 |
|
| 2017 |
Gaby JC, Buckley DH. The Use of Degenerate Primers in qPCR Analysis of Functional Genes Can Cause Dramatic Quantification Bias as Revealed by Investigation of nifH Primer Performance. Microbial Ecology. PMID 28389727 DOI: 10.1007/S00248-017-0968-0 |
0.303 |
|
| 2017 |
Choudoir MJ, Panke-Buisse K, Andam CP, Buckley DH. Genome Surfing As Driver of Microbial Genomic Diversity. Trends in Microbiology. PMID 28283403 DOI: 10.1016/J.Tim.2017.02.006 |
0.305 |
|
| 2016 |
Choudoir MJ, Doroghazi JR, Buckley DH. Latitude delineates patterns of biogeography in terrestrial Streptomyces. Environmental Microbiology. PMID 27322415 DOI: 10.1111/1462-2920.13420 |
0.344 |
|
| 2016 |
Pepe-Ranney C, Campbell AN, Koechli CN, Berthrong S, Buckley DH. Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil. Frontiers in Microbiology. 7: 703. PMID 27242725 DOI: 10.3389/Fmicb.2016.00703 |
0.393 |
|
| 2016 |
Whitman T, Pepe-Ranney C, Enders A, Koechli C, Campbell A, Buckley DH, Lehmann J. Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter. The Isme Journal. PMID 27128990 DOI: 10.1038/Ismej.2016.68 |
0.505 |
|
| 2016 |
Andam CP, Doroghazi JR, Campbell AN, Kelly PJ, Choudoir MJ, Buckley DH. A Latitudinal Diversity Gradient in Terrestrial Bacteria of the Genus Streptomyces. Mbio. 7. PMID 27073097 DOI: 10.1128/Mbio.02200-15 |
0.367 |
|
| 2016 |
Andam CP, Choudoir MJ, Vinh Nguyen A, Sol Park H, Buckley DH. Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages. The Isme Journal. PMID 26849310 DOI: 10.1038/Ismej.2015.230 |
0.314 |
|
| 2015 |
Pepe-Ranney C, Koechli C, Potrafka R, Andam C, Eggleston E, Garcia-Pichel F, Buckley DH. Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation. The Isme Journal. PMID 26114889 DOI: 10.1038/Ismej.2015.106 |
0.388 |
|
| 2014 |
Doroghazi JR, Buckley DH. Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin. Bmc Genomics. 15: 970. PMID 25399205 DOI: 10.1186/1471-2164-15-970 |
0.305 |
|
| 2014 |
Youngblut ND, Buckley DH. Intra-genomic variation in G + C content and its implications for DNA stable isotope probing. Environmental Microbiology Reports. 6: 767-75. PMID 25139123 DOI: 10.1111/1758-2229.12201 |
0.301 |
|
| 2014 |
Bräuer SL, Vuono D, Carmichael MJ, Pepe-Ranney C, Strom A, Rabinowitz E, Buckley DH, Zinder SH. Microbial sequencing analyses suggest the presence of a fecal veneer on indoor climbing wall holds. Current Microbiology. 69: 681-9. PMID 24972665 DOI: 10.1007/S00284-014-0643-3 |
0.388 |
|
| 2014 |
Gaby JC, Buckley DH. A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria. Database : the Journal of Biological Databases and Curation. 2014: bau001. PMID 24501396 DOI: 10.1093/Database/Bau001 |
0.329 |
|
| 2014 |
Wilbanks EG, Jaekel U, Salman V, Humphrey PT, Eisen JA, Facciotti MT, Buckley DH, Zinder SH, Druschel GK, Fike DA, Orphan VJ. Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh. Environmental Microbiology. 16: 3398-415. PMID 24428801 DOI: 10.1111/1462-2920.12388 |
0.339 |
|
| 2014 |
Blasiak LC, Zinder SH, Buckley DH, Hill RT. Bacterial diversity associated with the tunic of the model chordate Ciona intestinalis. The Isme Journal. 8: 309-20. PMID 24048225 DOI: 10.1038/Ismej.2013.156 |
0.395 |
|
| 2013 |
Berthrong ST, Buckley DH, Drinkwater LE. Agricultural management and labile carbon additions affect soil microbial community structure and interact with carbon and nitrogen cycling. Microbial Ecology. 66: 158-70. PMID 23588849 DOI: 10.1007/S00248-013-0225-0 |
0.485 |
|
| 2012 |
Choudoir MJ, Campbell AN, Buckley DH. Grappling with Proteus: population level approaches to understanding microbial diversity. Frontiers in Microbiology. 3: 336. PMID 23024645 DOI: 10.3389/Fmicb.2012.00336 |
0.379 |
|
| 2012 |
Armitage DW, Gallagher KL, Youngblut ND, Buckley DH, Zinder SH. Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat. Frontiers in Microbiology. 3: 293. PMID 22908010 DOI: 10.3389/Fmicb.2012.00293 |
0.358 |
|
| 2012 |
Gaby JC, Buckley DH. A comprehensive evaluation of PCR primers to amplify the nifH gene of nitrogenase. Plos One. 7: e42149. PMID 22848735 DOI: 10.1371/Journal.Pone.0042149 |
0.345 |
|
| 2011 |
Doroghazi JR, Buckley DH. A model for the effect of homologous recombination on microbial diversification. Genome Biology and Evolution. 3: 1349-56. PMID 22071790 DOI: 10.1093/Gbe/Evr110 |
0.353 |
|
| 2011 |
Gaby JC, Buckley DH. A global census of nitrogenase diversity. Environmental Microbiology. 13: 1790-9. PMID 21535343 DOI: 10.1111/J.1462-2920.2011.02488.X |
0.404 |
|
| 2011 |
Bergholz PW, Noar JD, Buckley DH. Environmental patterns are imposed on the population structure of Escherichia coli after fecal deposition. Applied and Environmental Microbiology. 77: 211-9. PMID 21075897 DOI: 10.1128/Aem.01880-10 |
0.369 |
|
| 2010 |
Doroghazi JR, Buckley DH. Widespread homologous recombination within and between Streptomyces species. The Isme Journal. 4: 1136-43. PMID 20393569 DOI: 10.1038/Ismej.2010.45 |
0.378 |
|
| 2010 |
DuPont ST, Culman SW, Ferris H, Buckley DH, Glover JD. No-tillage conversion of harvested perennial grassland to annual cropland reduces root biomass, decreases active carbon stocks, and impacts soil biota Agriculture, Ecosystems and Environment. 137: 25-32. DOI: 10.1016/J.Agee.2009.12.021 |
0.505 |
|
| 2010 |
Culman SW, DuPont ST, Glover JD, Buckley DH, Fick GW, Ferris H, Crews TE. Long-term impacts of high-input annual cropping and unfertilized perennial grass production on soil properties and belowground food webs in Kansas, USA Agriculture, Ecosystems and Environment. 137: 13-24. DOI: 10.1016/J.Agee.2009.11.008 |
0.494 |
|
| 2010 |
Glover JD, Culman SW, DuPont ST, Broussard W, Young L, Mangan ME, Mai JG, Crews TE, DeHaan LR, Buckley DH, Ferris H, Turner RE, Reynolds HL, Wyse DL. Harvested perennial grasslands provide ecological benchmarks for agricultural sustainability Agriculture, Ecosystems and Environment. 137: 3-12. DOI: 10.1016/J.Agee.2009.11.001 |
0.372 |
|
| 2009 |
Baumgartner LK, Dupraz C, Buckley DH, Spear JR, Pace NR, Visscher PT. Microbial species richness and metabolic activities in hypersaline microbial mats: insight into biosignature formation through lithification. Astrobiology. 9: 861-74. PMID 19968463 DOI: 10.1089/Ast.2008.0329 |
0.438 |
|
| 2009 |
Baumgartner LK, Spear JR, Buckley DH, Pace NR, Reid RP, Dupraz C, Visscher PT. Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas. Environmental Microbiology. 11: 2710-9. PMID 19601956 DOI: 10.1111/J.1462-2920.2009.01998.X |
0.418 |
|
| 2009 |
Noar JD, Buckley DH. Ideonella azotifigens sp. nov., an aerobic diazotroph of the Betaproteobacteria isolated from grass rhizosphere soil, and emended description of the genus Ideonella. International Journal of Systematic and Evolutionary Microbiology. 59: 1941-6. PMID 19567574 DOI: 10.1099/Ijs.0.003368-0 |
0.361 |
|
| 2009 |
Hsu SF, Buckley DH. Evidence for the functional significance of diazotroph community structure in soil. The Isme Journal. 3: 124-36. PMID 18769458 DOI: 10.1038/Ismej.2008.82 |
0.479 |
|
| 2008 |
Doroghazi JR, Buckley DH. Evidence from GC-TRFLP that bacterial communities in soil are lognormally distributed. Plos One. 3: e2910. PMID 18682841 DOI: 10.1371/Journal.Pone.0002910 |
0.445 |
|
| 2008 |
Buckley DH, Baumgartner LK, Visscher PT. Vertical distribution of methane metabolism in microbial mats of the Great Sippewissett Salt Marsh. Environmental Microbiology. 10: 967-77. PMID 18218028 DOI: 10.1111/J.1462-2920.2007.01517.X |
0.325 |
|
| 2008 |
Buckley DH, Huangyutitham V, Hsu S, Nelson TA. 15N2–DNA–stable isotope probing of diazotrophic methanotrophs in soil Soil Biology & Biochemistry. 40: 1272-1283. DOI: 10.1016/J.Soilbio.2007.05.006 |
0.46 |
|
| 2007 |
Buckley DH, Huangyutitham V, Hsu SF, Nelson TA. Stable isotope probing with 15N2 reveals novel noncultivated diazotrophs in soil. Applied and Environmental Microbiology. 73: 3196-204. PMID 17369332 DOI: 10.1128/Aem.02610-06 |
0.404 |
|
| 2006 |
Buckley DH, Huangyutitham V, Nelson TA, Rumberger A, Thies JE. Diversity of Planctomycetes in soil in relation to soil history and environmental heterogeneity. Applied and Environmental Microbiology. 72: 4522-31. PMID 16820439 DOI: 10.1128/Aem.00149-06 |
0.505 |
|
| 2006 |
Baumgartner LK, Reid RP, Dupraz C, Decho AW, Buckley DH, Spear JR, Przekop KM, Visscher PT. Sulfate reducing bacteria in microbial mats: Changing paradigms, new discoveries Sedimentary Geology. 185: 131-145. DOI: 10.1016/J.Sedgeo.2005.12.008 |
0.361 |
|
| 2003 |
Buckley DH, Schmidt TM. Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environmental Microbiology. 5: 441-52. PMID 12755711 DOI: 10.1046/J.1462-2920.2003.00404.X |
0.507 |
|
| 2003 |
Visscher PT, Baumgartner LK, Buckley DH, Rogers DR, Hogan ME, Raleigh CD, Turk KA, Des Marais DJ. Dimethyl sulphide and methanethiol formation in microbial mats: potential pathways for biogenic signatures. Environmental Microbiology. 5: 296-308. PMID 12662177 DOI: 10.1046/J.1462-2920.2003.00418.X |
0.36 |
|
| 2001 |
Buckley DH, Schmidt TM. The Structure of Microbial Communities in Soil and the Lasting Impact of Cultivation. Microbial Ecology. 42: 11-21. PMID 12035077 DOI: 10.1007/S002480000108 |
0.494 |
|
| 2001 |
Buckley DH, Schmidt TM. Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soil. Fems Microbiology Ecology. 35: 105-112. PMID 11248395 DOI: 10.1111/J.1574-6941.2001.Tb00793.X |
0.489 |
|
| 2001 |
Buckley DH, Schmidt TM. The structure of microbial communities in soil and the lasting impact of cultivation Microbial Ecology. 42: 11-21. |
0.395 |
|
| 1998 |
Buckley DH, Graber JR, Schmidt TM. Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils Applied and Environmental Microbiology. 64: 4333-9. PMID 9797286 DOI: 10.1128/Aem.64.11.4333-4339.1998 |
0.425 |
|
| 1997 |
Hogan DA, Buckley DH, Nakatsu CH, Schmidt TM, Hausinger RP. Distribution of the tfdA Gene in Soil Bacteria That Do Not Degrade 2,4-Dichlorophenoxyacetic Acid (2,4-D) Microbial Ecology. 34: 90-6. PMID 9230096 DOI: 10.1007/S002489900038 |
0.448 |
|
| 1997 |
Yanni YG, Rizk RY, Corich V, Squartini A, Ninke K, Philip-Hollingsworth S, Orgambide G, Bruijn FD, Stoltzfus J, Buckley D, Schmidt TM, Mateos PF, Ladha JK, Dazzo FB. Natural endophytic association between Rhizobium leguminosarum bv. trifolii and rice roots and assessment of its potential to promote rice growth Plant and Soil. 194: 99-114. DOI: 10.1007/978-94-011-7113-7_10 |
0.307 |
|
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