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Zev Kronenberg - Publications

Affiliations: 
University of Utah, Salt Lake City, UT 
Area:
Bioinformatics, evolution, population genetics
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Porubsky D, Dashnow H, Sasani TA, Logsdon GA, Hallast P, Noyes MD, Kronenberg ZN, Mokveld T, Koundinya N, Nolan C, Steely CJ, Guarracino A, Dolzhenko E, Harvey WT, Rowell WJ, et al. A familial, telomere-to-telomere reference for human mutation and recombination from a four-generation pedigree. Biorxiv : the Preprint Server For Biology. PMID 39149261 DOI: 10.1101/2024.08.05.606142  0.308
2024 Mahmoud M, Harting J, Corbitt H, Chen X, Jhangiani S, Doddapaneni H, Meng Q, Lambert C, Zhang S, Baybayan P, Henno G, Han T, Yi H, Riegler C, Metcalf G, ... ... Kronenberg Z, et al. Closing the gap: Solving complex medically relevant genes at scale. Medrxiv : the Preprint Server For Health Sciences. PMID 38562723 DOI: 10.1101/2024.03.14.24304179  0.308
2023 Maclary ET, Holt C, Concepcion GT, Sović I, Vickrey AI, Yandell M, Kronenberg Z, Shapiro MD. Assembly and annotation of two high-quality columbid reference genomes from sequencing of a Columba livia x Columba guinea F1 hybrid. G3 (Bethesda, Md.). PMID 38066578 DOI: 10.1093/g3journal/jkad280  0.532
2023 Maclary ET, Holt C, Concepcion GT, Sović I, Vickrey AI, Yandell M, Kronenberg Z, Shapiro MD. Assembly and annotation of two high-quality columbid reference genomes from sequencing of a x F hybrid. Biorxiv : the Preprint Server For Biology. PMID 37873124 DOI: 10.1101/2023.10.11.561892  0.538
2023 Kersten S, Rabanal FA, Herrmann J, Hess M, Kronenberg ZN, Schmid K, Weigel D. Deep haplotype analyses of target-site resistance locus ACCase in blackgrass enabled by pool-based amplicon sequencing. Plant Biotechnology Journal. PMID 36807472 DOI: 10.1111/pbi.14033  0.311
2022 Vining KJ, Pandelova I, Lange I, Parrish AN, Lefors A, Kronmiller B, Liachko I, Kronenberg Z, Srividya N, Lange BM. Chromosome-Level Genome Assembly of Mentha longifolia L. Reveals Gene Organization Underlying Disease Resistance and Essential Oil Traits. G3 (Bethesda, Md.). PMID 35551385 DOI: 10.1093/g3journal/jkac112  0.306
2021 Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Kronenberg Z, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0  0.309
2020 Harrop TWR, Guhlin J, McLaughlin GM, Permina E, Stockwell P, Gilligan J, Le Lec MF, Gruber MAM, Quinn O, Lovegrove M, Duncan EJ, Remnant EJ, Van Eeckhoven J, Graham B, Knapp RA, ... ... Kronenberg Z, et al. High-Quality Assemblies for Three Invasive Social Wasps from the Genus. G3 (Bethesda, Md.). PMID 32859687 DOI: 10.1534/G3.120.401579  0.408
2020 Bruders R, Van Hollebeke H, Osborne EJ, Kronenberg Z, Maclary E, Yandell M, Shapiro MD. A copy number variant is associated with a spectrum of pigmentation patterns in the rock pigeon (Columba livia). Plos Genetics. 16: e1008274. PMID 32433666 DOI: 10.1371/Journal.Pgen.1008274  0.609
2020 Low WY, Tearle R, Liu R, Koren S, Rhie A, Bickhart DM, Rosen BD, Kronenberg ZN, Kingan SB, Tseng E, Thibaud-Nissen F, Martin FJ, Billis K, Ghurye J, Hastie AR, et al. Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle. Nature Communications. 11: 2071. PMID 32350247 DOI: 10.1038/S41467-020-15848-Y  0.316
2019 He Y, Luo X, Zhou B, Hu T, Meng X, Audano PA, Kronenberg ZN, Eichler EE, Jin J, Guo Y, Yang Y, Qi X, Su B. Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants. Nature Communications. 10: 4233. PMID 31530812 DOI: 10.1038/s41467-019-12174-w  0.302
2019 Chaisson MJP, Sanders AD, Zhao X, Malhotra A, Porubsky D, Rausch T, Gardner EJ, Rodriguez OL, Guo L, Collins RL, Fan X, Wen J, Handsaker RE, Fairley S, Kronenberg ZN, et al. Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nature Communications. 10: 1784. PMID 30992455 DOI: 10.1038/S41467-018-08148-Z  0.31
2018 Vickrey AI, Bruders R, Kronenberg Z, Mackey E, Bohlender RJ, Maclary ET, Maynez R, Osborne EJ, Johnson KP, Huff CD, Yandell M, Shapiro MD. Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon. Elife. 7. PMID 30014848 DOI: 10.7554/Elife.34803  0.637
2018 Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, et al. High-resolution comparative analysis of great ape genomes. Science (New York, N.Y.). 360. PMID 29880660 DOI: 10.1126/Science.Aar6343  0.302
2018 Vickrey AI, Bruders R, Kronenberg Z, Mackey E, Bohlender RJ, Maclary ET, Maynez R, Osborne EJ, Johnson KP, Huff CD, Yandell M, Shapiro MD. Author response: Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon Elife. DOI: 10.7554/Elife.34803.037  0.577
2017 Turner TN, Coe BP, Dickel DE, Hoekzema K, Nelson BJ, Zody MC, Kronenberg ZN, Hormozdiari F, Raja A, Pennacchio LA, Darnell RB, Eichler EE. Genomic Patterns of De Novo Mutation in Simplex Autism. Cell. PMID 28965761 DOI: 10.1016/J.Cell.2017.08.047  0.386
2016 Cone KR, Kronenberg ZN, Yandell M, Elde NC. Emergence of a viral RNA polymerase variant during gene copy number amplification promotes rapid evolution of vaccinia virus. Journal of Virology. PMID 27928012 DOI: 10.1128/Jvi.01428-16  0.556
2016 Huddleston J, Chaisson MJ, Meltz Steinberg K, Warren W, Hoekzema K, Gordon DS, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin CS, Korlach J, Wilson RK, et al. Discovery and genotyping of structural variation from long-read haploid genome sequence data. Genome Research. PMID 27895111 DOI: 10.1101/Gr.214007.116  0.307
2016 Wang T, Guo H, Xiong B, Stessman HA, Wu H, Coe BP, Turner TN, Liu Y, Zhao W, Hoekzema K, Vives L, Xia L, Tang M, Ou J, Chen B, ... ... Kronenberg ZN, et al. De novo genic mutations among a Chinese autism spectrum disorder cohort. Nature Communications. 7: 13316. PMID 27824329 DOI: 10.1038/ncomms13316  0.301
2016 Barber MF, Kronenberg Z, Yandell M, Elde NC. Antimicrobial Functions of Lactoferrin Promote Genetic Conflicts in Ancient Primates and Modern Humans. Plos Genetics. 12: e1006063. PMID 27203426 DOI: 10.1371/Journal.Pgen.1006063  0.534
2016 Domyan ET, Kronenberg Z, Infante CR, Vickrey AI, Stringham SA, Bruders R, Guernsey MW, Park S, Payne J, Beckstead RB, Kardon G, Menke DB, Yandell M, Shapiro MD. Molecular shifts in limb identity underlie development of feathered feet in two domestic avian species. Elife. 5. PMID 26977633 DOI: 10.7554/Elife.12115  0.571
2016 Domyan ET, Kronenberg Z, Infante CR, Vickrey AI, Stringham SA, Bruders R, Guernsey MW, Park S, Payne J, Beckstead RB, Kardon G, Menke DB, Yandell M, Shapiro MD. Author response: Molecular shifts in limb identity underlie development of feathered feet in two domestic avian species Elife. DOI: 10.7554/Elife.12115.028  0.513
2015 Mason CC, Khorashad JS, Tantravahi SK, Kelley TW, Zabriskie MS, Yan D, Pomicter AD, Reynolds KR, Eiring AM, Kronenberg Z, Sherman RL, Tyner JW, Dalley BK, Dao KH, Yandell M, et al. Age-related mutations and chronic myelomonocytic leukemia. Leukemia. PMID 26648538 DOI: 10.1038/Leu.2015.337  0.579
2015 Kronenberg ZN, Osborne EJ, Cone KR, Kennedy BJ, Domyan ET, Shapiro MD, Elde NC, Yandell M. Wham: Identifying Structural Variants of Biological Consequence. Plos Computational Biology. 11: e1004572. PMID 26625158 DOI: 10.1371/Journal.Pcbi.1004572  0.546
2014 Galati DF, Bonney S, Kronenberg Z, Clarissa C, Yandell M, Elde NC, Jerka-Dziadosz M, Giddings TH, Frankel J, Pearson CG. DisAp-dependent striated fiber elongation is required to organize ciliary arrays. The Journal of Cell Biology. 207: 705-15. PMID 25533842 DOI: 10.1083/Jcb.201409123  0.514
2014 Kennedy B, Kronenberg Z, Hu H, Moore B, Flygare S, Reese MG, Jorde LB, Yandell M, Huff C. Using VAAST to Identify Disease-Associated Variants in Next-Generation Sequencing Data. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. 81: 6.14.1-6.14.25. PMID 24763993 DOI: 10.1002/0471142905.Hg0614S81  0.54
2014 Domyan ET, Guernsey MW, Kronenberg Z, Krishnan S, Boissy RE, Vickrey AI, Rodgers C, Cassidy P, Leachman SA, Fondon JW, Yandell M, Shapiro MD. Epistatic and combinatorial effects of pigmentary gene mutations in the domestic pigeon. Current Biology : Cb. 24: 459-64. PMID 24508169 DOI: 10.1016/J.Cub.2014.01.020  0.63
2014 Mason CC, Khorashad JS, Tantravahi SK, Kelley TW, Pomicter AD, Iovino AJ, Reynolds KR, Eiring AM, Zabriskie MS, Kronenberg Z, Tyner JW, Dalley B, Dao KT, O'Hare T, Yandell M, et al. Next Generation Sequencing to Delineate the Mutational Landscape of Chronic Myelomonocytic Leukemia (CMML): Novel Disease Genes and Correlations with Survival Blood. 124: 4637-4637. DOI: 10.1182/Blood.V124.21.4637.4637  0.583
2013 Kapusta A, Kronenberg Z, Lynch VJ, Zhuo X, Ramsay L, Bourque G, Yandell M, Feschotte C. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. Plos Genetics. 9: e1003470. PMID 23637635 DOI: 10.1371/Journal.Pgen.1003470  0.58
2013 Shapiro MD, Kronenberg Z, Li C, Domyan ET, Pan H, Campbell M, Tan H, Huff CD, Hu H, Vickrey AI, Nielsen SC, Stringham SA, Hu H, Willerslev E, Gilbert MT, et al. Genomic diversity and evolution of the head crest in the rock pigeon. Science (New York, N.Y.). 339: 1063-7. PMID 23371554 DOI: 10.1126/Science.1230422  0.609
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