| Year |
Citation |
Score |
| 2021 |
Consuegra J, Gaffé J, Lenski RE, Hindré T, Barrick JE, Tenaillon O, Schneider D. Insertion-sequence-mediated mutations both promote and constrain evolvability during a long-term experiment with bacteria. Nature Communications. 12: 980. PMID 33579917 DOI: 10.1038/s41467-021-21210-7 |
0.659 |
|
| 2020 |
Sutera V, Hennebique A, Lopez F, Fernandez N, Schneider D, Maurin M. Genomic trajectories to fluoroquinolone resistance in Francisella tularensis subsp. holarctica strain LVS. International Journal of Antimicrobial Agents. 106153. PMID 32911069 DOI: 10.1016/j.ijantimicag.2020.106153 |
0.332 |
|
| 2019 |
El Houdaigui B, Forquet R, Hindré T, Schneider D, Nasser W, Reverchon S, Meyer S. Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling. Nucleic Acids Research. 47: 5648-5657. PMID 31216038 DOI: 10.1093/Nar/Gkz300 |
0.339 |
|
| 2019 |
Lamrabet O, Martin M, Lenski RE, Schneider D. Changes in Intrinsic Antibiotic Susceptibility during a Long-Term Evolution Experiment with Escherichia coli. Mbio. 10. PMID 30837336 DOI: 10.1128/Mbio.00189-19 |
0.503 |
|
| 2019 |
Lamrabet O, Plumbridge J, Martin M, Lenski RE, Schneider D, Hindré T. Plasticity of Promoter-Core Sequences Allows Bacteria to Compensate for the Loss of a Key Global Regulatory Gene. Molecular Biology and Evolution. PMID 30825312 DOI: 10.1093/Molbev/Msz042 |
0.594 |
|
| 2017 |
Couce A, Caudwell LV, Feinauer C, Hindré T, Feugeas JP, Weigt M, Lenski RE, Schneider D, Tenaillon O. Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria. Proceedings of the National Academy of Sciences of the United States of America. 114: E9026-E9035. PMID 29073099 DOI: 10.1073/Pnas.1705887114 |
0.645 |
|
| 2017 |
Consuegra J, Plucain J, Gaffé J, Hindré T, Schneider D. Genetic Basis of Exploiting Ecological Opportunity During the Long-Term Diversification of a Bacterial Population. Journal of Molecular Evolution. PMID 28744786 DOI: 10.1007/s00239-017-9802-z |
0.41 |
|
| 2016 |
Großkopf T, Consuegra J, Gaffé J, Willison JC, Lenski RE, Soyer OS, Schneider D. Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment. Bmc Evolutionary Biology. 16: 163. PMID 27544664 DOI: 10.1186/S12862-016-0733-X |
0.508 |
|
| 2016 |
Tenaillon O, Barrick JE, Ribeck N, Deatherage DE, Blanchard JL, Dasgupta A, Wu GC, Wielgoss S, Cruveiller S, Médigue C, Schneider D, Lenski RE. Tempo and mode of genome evolution in a 50,000-generation experiment. Nature. PMID 27479321 DOI: 10.1038/Nature18959 |
0.798 |
|
| 2016 |
Plucain J, Suau A, Cruveiller S, Médigue C, Schneider D, Le Gac M. Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria. Bmc Evolutionary Biology. 16: 86. PMID 27108090 DOI: 10.1186/s12862-016-0662-8 |
0.327 |
|
| 2014 |
Raeside C, Gaffé J, Deatherage DE, Tenaillon O, Briska AM, Ptashkin RN, Cruveiller S, Médigue C, Lenski RE, Barrick JE, Schneider D. Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. Mbio. 5: e01377-14. PMID 25205090 DOI: 10.1128/Mbio.01377-14 |
0.594 |
|
| 2014 |
Plucain J, Hindré T, Le Gac M, Tenaillon O, Cruveiller S, Médigue C, Leiby N, Harcombe WR, Marx CJ, Lenski RE, Schneider D. Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli. Science (New York, N.Y.). 343: 1366-9. PMID 24603152 DOI: 10.1126/Science.1248688 |
0.676 |
|
| 2013 |
Le Gac M, Cooper TF, Cruveiller S, Médigue C, Schneider D. Evolutionary history and genetic parallelism affect correlated responses to evolution. Molecular Ecology. 22: 3292-3303. PMID 24624420 DOI: 10.1111/mec.12312 |
0.399 |
|
| 2013 |
Maharjan RP, Gaffé J, Plucain J, Schliep M, Wang L, Feng L, Tenaillon O, Ferenci T, Schneider D. A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli. Bmc Genomics. 14: 441. PMID 23822838 DOI: 10.1186/1471-2164-14-441 |
0.416 |
|
| 2013 |
Wielgoss S, Barrick JE, Tenaillon O, Wiser MJ, Dittmar WJ, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D. Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load. Proceedings of the National Academy of Sciences of the United States of America. 110: 222-7. PMID 23248287 DOI: 10.1073/Pnas.1219574110 |
0.792 |
|
| 2012 |
Le Gac M, Plucain J, Hindré T, Lenski RE, Schneider D. Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 109: 9487-92. PMID 22645336 DOI: 10.1073/Pnas.1207091109 |
0.521 |
|
| 2012 |
Hindré T, Knibbe C, Beslon G, Schneider D. New insights into bacterial adaptation through in vivo and in silico experimental evolution. Nature Reviews. Microbiology. 10: 352-65. PMID 22450379 DOI: 10.1038/Nrmicro2750 |
0.366 |
|
| 2011 |
Wielgoss S, Barrick JE, Tenaillon O, Cruveiller S, Chane-Woon-Ming B, Médigue C, Lenski RE, Schneider D. Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli. G3 (Bethesda, Md.). 1: 183-186. PMID 22207905 DOI: 10.1534/G3.111.000406 |
0.78 |
|
| 2011 |
Khan AI, Dinh DM, Schneider D, Lenski RE, Cooper TF. Negative epistasis between beneficial mutations in an evolving bacterial population. Science (New York, N.Y.). 332: 1193-6. PMID 21636772 DOI: 10.1126/Science.1203801 |
0.662 |
|
| 2011 |
Gaffé J, McKenzie C, Maharjan RP, Coursange E, Ferenci T, Schneider D. Insertion sequence-driven evolution of Escherichia coli in chemostats. Journal of Molecular Evolution. 72: 398-412. PMID 21399911 DOI: 10.1007/s00239-011-9439-2 |
0.457 |
|
| 2011 |
Charpentier X, Kay E, Schneider D, Shuman HA. Antibiotics and UV radiation induce competence for natural transformation in Legionella pneumophila. Journal of Bacteriology. 193: 1114-21. PMID 21169481 DOI: 10.1128/Jb.01146-10 |
0.326 |
|
| 2011 |
Crozat E, Hindré T, Kühn L, Garin J, Lenski RE, Schneider D. Altered regulation of the OmpF porin by Fis in Escherichia coli during an evolution experiment and between B and K-12 strains. Journal of Bacteriology. 193: 429-40. PMID 21097626 DOI: 10.1128/Jb.01341-10 |
0.61 |
|
| 2010 |
Gestin B, Valade E, Thibault F, Schneider D, Maurin M. Phenotypic and genetic characterization of macrolide resistance in Francisella tularensis subsp. holarctica biovar I. The Journal of Antimicrobial Chemotherapy. 65: 2359-67. PMID 20837574 DOI: 10.1093/Jac/Dkq315 |
0.382 |
|
| 2010 |
Meyer JR, Agrawal AA, Quick RT, Dobias DT, Schneider D, Lenski RE. Parallel changes in host resistance to viral infection during 45,000 generations of relaxed selection. Evolution; International Journal of Organic Evolution. 64: 3024-34. PMID 20550574 DOI: 10.1111/J.1558-5646.2010.01049.X |
0.47 |
|
| 2010 |
Maharjan R, Zhou Z, Ren Y, Li Y, Gaffé J, Schneider D, McKenzie C, Reeves PR, Ferenci T, Wang L. Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli. Journal of Bacteriology. 192: 4517-21. PMID 20543067 DOI: 10.1128/Jb.00368-10 |
0.472 |
|
| 2010 |
Crozat E, Winkworth C, Gaffé J, Hallin PF, Riley MA, Lenski RE, Schneider D. Parallel genetic and phenotypic evolution of DNA superhelicity in experimental populations of Escherichia coli. Molecular Biology and Evolution. 27: 2113-28. PMID 20392810 DOI: 10.1093/Molbev/Msq099 |
0.589 |
|
| 2010 |
Hindré T, Gac ML, Plucain J, Wielgoss S, Gaffé J, Schneider D. Evolution in action: Dream or reality? | L'évolution en action: Rêve ou réalité? Biofutur. 52-56. |
0.667 |
|
| 2009 |
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, Kim JF. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature. 461: 1243-7. PMID 19838166 DOI: 10.1038/Nature08480 |
0.667 |
|
| 2009 |
Almahmoud I, Kay E, Schneider D, Maurin M. Mutational paths towards increased fluoroquinolone resistance in Legionella pneumophila. The Journal of Antimicrobial Chemotherapy. 64: 284-93. PMID 19474069 DOI: 10.1093/jac/dkp173 |
0.358 |
|
| 2009 |
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, ... ... Schneider D, et al. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. Plos Genetics. 5: e1000344. PMID 19165319 DOI: 10.1371/Journal.Pgen.1000344 |
0.448 |
|
| 2009 |
Philippe N, Pelosi L, Lenski RE, Schneider D. Evolution of penicillin-binding protein 2 concentration and cell shape during a long-term experiment with Escherichia coli. Journal of Bacteriology. 191: 909-21. PMID 19047356 DOI: 10.1128/Jb.01419-08 |
0.605 |
|
| 2009 |
Rozen DE, Philippe N, Arjan de Visser J, Lenski RE, Schneider D. Death and cannibalism in a seasonal environment facilitate bacterial coexistence. Ecology Letters. 12: 34-44. PMID 19019196 DOI: 10.1111/J.1461-0248.2008.01257.X |
0.557 |
|
| 2008 |
Sleight SC, Orlic C, Schneider D, Lenski RE. Genetic basis of evolutionary adaptation by Escherichia coli to stressful cycles of freezing, thawing and growth. Genetics. 180: 431-43. PMID 18757947 DOI: 10.1534/Genetics.108.091330 |
0.611 |
|
| 2008 |
Cooper TF, Remold SK, Lenski RE, Schneider D. Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli. Plos Genetics. 4: e35. PMID 18282111 DOI: 10.1371/Journal.Pgen.0040035 |
0.587 |
|
| 2007 |
Philippe N, Crozat E, Lenski RE, Schneider D. Evolution of global regulatory networks during a long-term experiment with Escherichia coli. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 846-60. PMID 17691099 DOI: 10.1002/Bies.20629 |
0.642 |
|
| 2006 |
Doléans-Jordheim A, Akermi M, Ginevra C, Cazalet C, Kay E, Schneider D, Buchrieser C, Atlan D, Vandenesch F, Etienne J, Jarraud S. Growth-phase-dependent mobility of the lvh-encoding region in Legionella pneumophila strain Paris. Microbiology (Reading, England). 152: 3561-8. PMID 17159208 DOI: 10.1099/Mic.0.29227-0 |
0.339 |
|
| 2006 |
Cooper TF, Morby AP, Gunn A, Schneider D. Effect of random and hub gene disruptions on environmental and mutational robustness in Escherichia coli. Bmc Genomics. 7: 237. PMID 16982007 DOI: 10.1186/1471-2164-7-237 |
0.407 |
|
| 2006 |
Woods R, Schneider D, Winkworth CL, Riley MA, Lenski RE. Tests of parallel molecular evolution in a long-term experiment with Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 103: 9107-12. PMID 16751270 DOI: 10.1073/Pnas.0602917103 |
0.643 |
|
| 2006 |
Pelosi L, Kühn L, Guetta D, Garin J, Geiselmann J, Lenski RE, Schneider D. Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli. Genetics. 173: 1851-69. PMID 16702438 DOI: 10.1534/Genetics.105.049619 |
0.635 |
|
| 2005 |
Rozen DE, Schneider D, Lenski RE. Long-term experimental evolution in Escherichia coli. XIII. Phylogenetic history of a balanced polymorphism. Journal of Molecular Evolution. 61: 171-80. PMID 15999245 DOI: 10.1007/S00239-004-0322-2 |
0.575 |
|
| 2005 |
Crozat E, Philippe N, Lenski RE, Geiselmann J, Schneider D. Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection. Genetics. 169: 523-32. PMID 15489515 DOI: 10.1534/Genetics.104.035717 |
0.638 |
|
| 2004 |
Schneider D, Lenski RE. Dynamics of insertion sequence elements during experimental evolution of bacteria. Research in Microbiology. 155: 319-27. PMID 15207863 DOI: 10.1016/J.Resmic.2003.12.008 |
0.612 |
|
| 2004 |
Philippe N, Alcaraz JP, Coursange E, Geiselmann J, Schneider D. Improvement of pCVD442, a suicide plasmid for gene allele exchange in bacteria. Plasmid. 51: 246-55. PMID 15109831 DOI: 10.1016/J.Plasmid.2004.02.003 |
0.48 |
|
| 2003 |
Zinser ER, Schneider D, Blot M, Kolter R. Bacterial evolution through the selective loss of beneficial Genes. Trade-offs in expression involving two loci. Genetics. 164: 1271-7. PMID 12930738 |
0.682 |
|
| 2002 |
Schneider D, Duperchy E, Depeyrot J, Coursange E, Lenski R, Blot M. Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers. Bmc Microbiology. 2: 18. PMID 12106505 DOI: 10.1186/1471-2180-2-18 |
0.727 |
|
| 2002 |
Schneider D, Duperchy E, Depeyrot J, Coursange E, Lenski RE, Blot M. Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7using IS elements as molecular markers Bmc Microbiology. 2: 1-8. DOI: 10.1186/1471-2180-2-1 |
0.702 |
|
| 2001 |
Cooper VS, Schneider D, Blot M, Lenski RE. Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B. Journal of Bacteriology. 183: 2834-41. PMID 11292803 DOI: 10.1128/Jb.183.9.2834-2841.2001 |
0.773 |
|
| 2000 |
Schneider D, Duperchy E, Coursange E, Lenski RE, Blot M. Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements. Genetics. 156: 477-88. PMID 11014799 |
0.785 |
|
| 2000 |
Schneider D, Faure D, Noirclerc-Savoye M, Barrière AC, Coursange E, Blot M. A broad-host-range plasmid for isolating mobile genetic elements in gram-negative bacteria. Plasmid. 44: 201-7. PMID 10964631 DOI: 10.1006/Plas.2000.1483 |
0.702 |
|
| 1999 |
Papadopoulos D, Schneider D, Meier-Eiss J, Arber W, Lenski RE, Blot M. Genomic evolution during a 10,000-generation experiment with bacteria. Proceedings of the National Academy of Sciences of the United States of America. 96: 3807-12. PMID 10097119 DOI: 10.1073/Pnas.96.7.3807 |
0.774 |
|
| 1996 |
Aigle B, Schneider D, Morilhat C, Vandewiele D, Dary A, Holl AC, Simonet JM, Decaris B. An amplifiable and deletable locus of Streptomyces ambofaciens RP181110 contains a very large gene homologous to polyketide synthase genes. Microbiology (Reading, England). 142: 2815-24. PMID 8885397 DOI: 10.1099/13500872-142-10-2815 |
0.4 |
|
| 1993 |
Schneider D, Aigle B, Leblond P, Simonet JM, Decaris B. Analysis of genome instability in Streptomyces ambofaciens. Journal of General Microbiology. 139: 2559-67. PMID 8277241 DOI: 10.1099/00221287-139-11-2559 |
0.385 |
|
| 1993 |
Aubert M, Weber E, Schneider D, Simonet JM, Decaris B. Primary structure analysis of a duplicated region in the amplifiable AUD6 locus of Streptomyces ambofaciens DSM40697. Fems Microbiology Letters. 113: 49-56. PMID 8243982 DOI: 10.1111/J.1574-6968.1993.Tb06486.X |
0.312 |
|
| 1992 |
Simonet JM, Schneider D, Volff JN, Dary A, Decaris B. Genetic instability in Streptomyces ambofaciens: inducibility and associated genome plasticity. Gene. 115: 49-54. PMID 1612449 DOI: 10.1016/0378-1119(92)90539-2 |
0.39 |
|
| 1991 |
Demuyter P, Schneider D, Leblond P, Simonet JM, Decaris B. A chromosomal hotspot for multiple rearrangements associated with genetic instability of Streptomyces ambofaciens DSM 40697 Journal of General Microbiology. 137: 491-499. DOI: 10.1099/00221287-137-3-491 |
0.368 |
|
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