Jonas Warringer - Publications

Affiliations: 
University of Gothenburg, Sweden, Gothenburg, Västra Götalands län, Sweden 

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li J, Vázquez-García I, Persson K, González A, Yue JX, Barré B, Hall MN, Long A, Warringer J, Mustonen V, Liti G. Shared molecular targets confer resistance over short and long evolutionary timescales. Molecular Biology and Evolution. PMID 30657986 DOI: 10.1093/molbev/msz006  1
2018 Moradigaravand D, Palm M, Farewell A, Mustonen V, Warringer J, Parts L. Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data. Plos Computational Biology. 14: e1006258. PMID 30550564 DOI: 10.1371/journal.pcbi.1006258  1
2018 Graf FE, Palm M, Warringer J, Farewell A. Inhibiting conjugation as a tool in the fight against antibiotic resistance. Drug Development Research. PMID 30343487 DOI: 10.1002/ddr.21457  1
2017 Vázquez-García I, Salinas F, Li J, Fischer A, Barré B, Hallin J, Bergström A, Alonso-Perez E, Warringer J, Mustonen V, Liti G. Clonal Heterogeneity Influences the Fate of New Adaptive Mutations. Cell Reports. 21: 732-744. PMID 29045840 DOI: 10.1016/j.celrep.2017.09.046  1
2017 Liti G, Warringer J, Blomberg A. Budding Yeast Strains and Genotype-Phenotype Mapping. Cold Spring Harbor Protocols. 2017: pdb.top077735. PMID 28765302 DOI: 10.1101/pdb.top077735  1
2017 Warringer J, Liti G, Blomberg A. Yeast Reciprocal Hemizygosity to Confirm the Causality of a Quantitative Trait Loci-Associated Gene. Cold Spring Harbor Protocols. 2017: pdb.prot089078. PMID 28765294 DOI: 10.1101/pdb.prot089078  1
2017 Liti G, Warringer J, Blomberg A. Mapping Quantitative Trait Loci in Yeast. Cold Spring Harbor Protocols. 2017: pdb.prot089060. PMID 28765293 DOI: 10.1101/pdb.prot089060  1
2017 Liti G, Warringer J, Blomberg A. Isolation and Laboratory Domestication of Natural Yeast Strains. Cold Spring Harbor Protocols. 2017: pdb.prot089052. PMID 28765292 DOI: 10.1101/pdb.prot089052  1
2017 Yue JX, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergström A, Coupland P, Warringer J, Lagomarsino MC, Fischer G, Durbin R, Liti G. Contrasting evolutionary genome dynamics between domesticated and wild yeasts. Nature Genetics. PMID 28416820 DOI: 10.1038/ng.3847  1
2016 Gjuvsland AB, Zörgö E, Samy JK, Stenberg S, Demirsoy IH, Roque F, Maciaszczyk-Dziubinska E, Migocka M, Alonso-Perez E, Zackrisson M, Wysocki R, Tamás MJ, Jonassen I, Omholt SW, Warringer J. Disentangling genetic and epigenetic determinants of ultrafast adaptation. Molecular Systems Biology. 12: 892. PMID 27979908  1
2016 Hallin J, Märtens K, Young AI, Zackrisson M, Salinas F, Parts L, Warringer J, Liti G. Powerful decomposition of complex traits in a diploid model. Nature Communications. 7: 13311. PMID 27804950 DOI: 10.1038/ncomms13311  1
2016 Zackrisson M, Hallin J, Ottosson LG, Dahl P, Fernandez-Parada E, Ländström E, Fernandez-Ricaud L, Kaferle P, Skyman A, Stenberg S, Omholt S, Petrovic U, Warringer J, Blomberg A. Scan-o-matic: High-Resolution Microbial Phenomics at a Massive Scale. G3 (Bethesda, Md.). PMID 27371952 DOI: 10.1534/g3.116.032342  1
2016 Fernandez-Ricaud L, Kourtchenko O, Zackrisson M, Warringer J, Blomberg A. PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics. Bmc Bioinformatics. 17: 249. PMID 27334112 DOI: 10.1186/s12859-016-1134-2  1
2016 Märtens K, Hallin J, Warringer J, Liti G, Parts L. Predicting quantitative traits from genome and phenome with near perfect accuracy. Nature Communications. 7: 11512. PMID 27160605 DOI: 10.1038/ncomms11512  1
2015 García-Martínez J, Delgado-Ramos L, Ayala G, Pelechano V, Medina DA, Carrasco F, González R, Andrés-León E, Steinmetz L, Warringer J, Chávez S, Pérez-Ortín JE. The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons. Nucleic Acids Research. PMID 26717982 DOI: 10.1093/nar/gkv1512  1
2015 Kohler A, Böcker U, Shapaval V, Forsmark A, Andersson M, Warringer J, Martens H, Omholt SW, Blomberg A. High-throughput biochemical fingerprinting of Saccharomyces cerevisiae by Fourier transform infrared spectroscopy. Plos One. 10: e0118052. PMID 25706524 DOI: 10.1371/journal.pone.0118052  1
2015 Ibstedt S, Stenberg S, Bagés S, Gjuvsland AB, Salinas F, Kourtchenko O, Samy JK, Blomberg A, Omholt SW, Liti G, Beltran G, Warringer J. Concerted evolution of life stage performances signals recent selection on yeast nitrogen use. Molecular Biology and Evolution. 32: 153-61. PMID 25349282 DOI: 10.1093/molbev/msu285  1
2014 Brown WR, Thomas G, Lee NC, Blythe M, Liti G, Warringer J, Loose MW. Kinetochore assembly and heterochromatin formation occur autonomously in Schizosaccharomyces pombe. Proceedings of the National Academy of Sciences of the United States of America. 111: 1903-8. PMID 24449889 DOI: 10.1073/pnas.1216934111  1
2014 Bergström A, Simpson JT, Salinas F, Barré B, Parts L, Zia A, Nguyen Ba AN, Moses AM, Louis EJ, Mustonen V, Warringer J, Durbin R, Liti G. A high-definition view of functional genetic variation from natural yeast genomes. Molecular Biology and Evolution. 31: 872-88. PMID 24425782 DOI: 10.1093/molbev/msu037  1
2013 Cubillos FA, Parts L, Salinas F, Bergström A, Scovacricchi E, Zia A, Illingworth CJ, Mustonen V, Ibstedt S, Warringer J, Louis EJ, Durbin R, Liti G. High-resolution mapping of complex traits with a four-parent advanced intercross yeast population. Genetics. 195: 1141-55. PMID 24037264 DOI: 10.1534/genetics.113.155515  1
2013 Jansson K, Alao JP, Viktorsson K, Warringer J, Lewensohn R, Sunnerhagen P. A role for Myh1 in DNA repair after treatment with strand-breaking and crosslinking chemotherapeutic agents. Environmental and Molecular Mutagenesis. 54: 327-37. PMID 23677513 DOI: 10.1002/em.21784  1
2013 Zörgö E, Chwialkowska K, Gjuvsland AB, Garré E, Sunnerhagen P, Liti G, Blomberg A, Omholt SW, Warringer J. Ancient evolutionary trade-offs between yeast ploidy states. Plos Genetics. 9: e1003388. PMID 23555297 DOI: 10.1371/journal.pgen.1003388  1
2013 Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, Dafhnis-Calas F, Khoshraftar S, Malla S, Mehta N, Siow CC, Warringer J, Moses AM, Louis EJ, Nieduszynski CA. High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome. Bmc Genomics. 14: 69. PMID 23368932 DOI: 10.1186/1471-2164-14-69  1
2012 Salinas F, Cubillos FA, Soto D, Garcia V, Bergström A, Warringer J, Ganga MA, Louis EJ, Liti G, Martinez C. The genetic basis of natural variation in oenological traits in Saccharomyces cerevisiae. Plos One. 7: e49640. PMID 23185390 DOI: 10.1371/journal.pone.0049640  1
2012 Hodgins-Davis A, Adomas AB, Warringer J, Townsend JP. Abundant gene-by-environment interactions in gene expression reaction norms to copper within Saccharomyces cerevisiae. Genome Biology and Evolution. 4: 1061-79. PMID 23019066 DOI: 10.1093/gbe/evs084  1
2012 Zörgö E, Gjuvsland A, Cubillos FA, Louis EJ, Liti G, Blomberg A, Omholt SW, Warringer J. Life history shapes trait heredity by accumulation of loss-of-function alleles in yeast. Molecular Biology and Evolution. 29: 1781-9. PMID 22319169 DOI: 10.1093/molbev/mss019  1
2011 Brown WR, Liti G, Rosa C, James S, Roberts I, Robert V, Jolly N, Tang W, Baumann P, Green C, Schlegel K, Young J, Hirchaud F, Leek S, Thomas G, ... ... Warringer J, et al. A Geographically Diverse Collection of Schizosaccharomyces pombe Isolates Shows Limited Phenotypic Variation but Extensive Karyotypic Diversity. G3 (Bethesda, Md.). 1: 615-26. PMID 22384373 DOI: 10.1534/g3.111.001123  1
2011 Mehmood T, Martens H, Sæbø S, Warringer J, Snipen L. A Partial Least Squares based algorithm for parsimonious variable selection. Algorithms For Molecular Biology : Amb. 6: 27. PMID 22142365 DOI: 10.1186/1748-7188-6-27  1
2011 Babazadeh R, Jafari SM, Zackrisson M, Blomberg A, Hohmann S, Warringer J, Krantz M. The Ashbya gossypii EF-1α promoter of the ubiquitously used MX cassettes is toxic to Saccharomyces cerevisiae. Febs Letters. 585: 3907-13. PMID 22033143 DOI: 10.1016/j.febslet.2011.10.029  1
2011 Mehmood T, Martens H, Saebø S, Warringer J, Snipen L. Mining for genotype-phenotype relations in Saccharomyces using partial least squares. Bmc Bioinformatics. 12: 318. PMID 21812956 DOI: 10.1186/1471-2105-12-318  1
2011 Warringer J, Zörgö E, Cubillos FA, Zia A, Gjuvsland A, Simpson JT, Forsmark A, Durbin R, Omholt SW, Louis EJ, Liti G, Moses A, Blomberg A. Trait variation in yeast is defined by population history. Plos Genetics. 7: e1002111. PMID 21698134 DOI: 10.1371/journal.pgen.1002111  1
2011 Forsmark A, Rossi G, Wadskog I, Brennwald P, Warringer J, Adler L. Quantitative proteomics of yeast post-Golgi vesicles reveals a discriminating role for Sro7p in protein secretion. Traffic (Copenhagen, Denmark). 12: 740-53. PMID 21477180 DOI: 10.1111/j.1600-0854.2011.01186.x  1
2011 Li Z, Vizeacoumar FJ, Bahr S, Li J, Warringer J, Vizeacoumar FS, Min R, Vandersluis B, Bellay J, Devit M, Fleming JA, Stephens A, Haase J, Lin ZY, Baryshnikova A, et al. Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nature Biotechnology. 29: 361-7. PMID 21441928 DOI: 10.1038/nbt.1832  1
2011 Parts L, Cubillos FA, Warringer J, Jain K, Salinas F, Bumpstead SJ, Molin M, Zia A, Simpson JT, Quail MA, Moses A, Louis EJ, Durbin R, Liti G. Revealing the genetic structure of a trait by sequencing a population under selection. Genome Research. 21: 1131-8. PMID 21422276 DOI: 10.1101/gr.116731.110  1
2011 Park EH, Zhang F, Warringer J, Sunnerhagen P, Hinnebusch AG. Depletion of eIF4G from yeast cells narrows the range of translational efficiencies genome-wide. Bmc Genomics. 12: 68. PMID 21269496 DOI: 10.1186/1471-2164-12-68  1
2011 Cubillos FA, Billi E, Zörgö E, Parts L, Fargier P, Omholt S, Blomberg A, Warringer J, Louis EJ, Liti G. Assessing the complex architecture of polygenic traits in diverged yeast populations. Molecular Ecology. 20: 1401-13. PMID 21261765 DOI: 10.1111/j.1365-294X.2011.05005.x  1
2010 Ottosson LG, Logg K, Ibstedt S, Sunnerhagen P, Käll M, Blomberg A, Warringer J. Sulfate assimilation mediates tellurite reduction and toxicity in Saccharomyces cerevisiae. Eukaryotic Cell. 9: 1635-47. PMID 20675578 DOI: 10.1128/EC.00078-10  1
2010 Warringer J, Hult M, Regot S, Posas F, Sunnerhagen P. The HOG pathway dictates the short-term translational response after hyperosmotic shock. Molecular Biology of the Cell. 21: 3080-92. PMID 20587780 DOI: 10.1091/mbc.E10-01-0006  1
2009 Gombault A, Warringer J, Caesar R, Godin F, Vallée B, Doudeau M, Chautard H, Blomberg A, Bénédetti H. A phenotypic study of TFS1 mutants differentially altered in the inhibition of Ira2p or CPY. Fems Yeast Research. 9: 867-74. PMID 19552705 DOI: 10.1111/j.1567-1364.2009.00535.x  1
2009 Krantz M, Ahmadpour D, Ottosson LG, Warringer J, Waltermann C, Nordlander B, Klipp E, Blomberg A, Hohmann S, Kitano H. Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway. Molecular Systems Biology. 5: 281. PMID 19536204 DOI: 10.1038/msb.2009.36  1
2009 Molin C, Jauhiainen A, Warringer J, Nerman O, Sunnerhagen P. mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress. Rna (New York, N.Y.). 15: 600-14. PMID 19223440 DOI: 10.1261/rna.1403509  1
2009 Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V, Tsai IJ, Bergman CM, Bensasson D, O'Kelly MJ, van Oudenaarden A, et al. Population genomics of domestic and wild yeasts. Nature. 458: 337-41. PMID 19212322 DOI: 10.1038/nature07743  1
2008 Warringer J, Anevski D, Liu B, Blomberg A. Chemogenetic fingerprinting by analysis of cellular growth dynamics. Bmc Chemical Biology. 8: 3. PMID 18721464 DOI: 10.1186/1472-6769-8-3  1
2008 Jansson K, Warringer J, Farewell A, Park HO, Hoe KL, Kim DU, Hayles J, Sunnerhagen P. The tumor suppressor homolog in fission yeast, myh1(+), displays a strong interaction with the checkpoint gene rad1(+). Mutation Research. 644: 48-55. PMID 18675827 DOI: 10.1016/j.mrfmmm.2008.07.001  1
2008 Logg K, Warringer J, Hashemi SH, Käll M, Blomberg A. The sodium pump Ena1p provides mechanistic insight into the salt sensitivity of vacuolar protein sorting mutants. Biochimica Et Biophysica Acta. 1783: 974-84. PMID 18395523 DOI: 10.1016/j.bbamcr.2008.02.022  1
2008 Esguerra J, Warringer J, Blomberg A. Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping. Rna (New York, N.Y.). 14: 649-56. PMID 18256246 DOI: 10.1261/rna.845808  1
2007 Fernandez-Ricaud L, Warringer J, Ericson E, Glaab K, Davidsson P, Nilsson F, Kemp GJ, Nerman O, Blomberg A. PROPHECY--a yeast phenome database, update 2006. Nucleic Acids Research. 35: D463-7. PMID 17148481 DOI: 10.1093/nar/gkl1029  1
2006 Warringer J, Blomberg A. Evolutionary constraints on yeast protein size. Bmc Evolutionary Biology. 6: 61. PMID 16911784 DOI: 10.1186/1471-2148-6-61  1
2006 Osterberg M, Kim H, Warringer J, Melén K, Blomberg A, von Heijne G. Phenotypic effects of membrane protein overexpression in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 103: 11148-53. PMID 16847257 DOI: 10.1073/pnas.0604078103  1
2006 Warringer J, Blomberg A. Involvement of yeast YOL151W/GRE2 in ergosterol metabolism. Yeast (Chichester, England). 23: 389-98. PMID 16598690 DOI: 10.1002/yea.1363  1
2006 Ericson E, Pylvänäinen I, Fernandez-Ricaud L, Nerman O, Warringer J, Blomberg A. Genetic pleiotropy in Saccharomyces cerevisiae quantified by high-resolution phenotypic profiling. Molecular Genetics and Genomics : Mgg. 275: 605-14. PMID 16534619 DOI: 10.1007/s00438-006-0112-1  1
2006 Caesar R, Warringer J, Blomberg A. Physiological importance and identification of novel targets for the N-terminal acetyltransferase NatB. Eukaryotic Cell. 5: 368-78. PMID 16467477 DOI: 10.1128/EC.5.2.368-378.2006  1
2005 Fernandez-Ricaud L, Warringer J, Ericson E, Pylvänäinen I, Kemp GJ, Nerman O, Blomberg A. PROPHECY--a database for high-resolution phenomics. Nucleic Acids Research. 33: D369-73. PMID 15608218 DOI: 10.1093/nar/gki126  1
2003 Warringer J, Ericson E, Fernandez L, Nerman O, Blomberg A. High-resolution yeast phenomics resolves different physiological features in the saline response. Proceedings of the National Academy of Sciences of the United States of America. 100: 15724-9. PMID 14676322 DOI: 10.1073/pnas.2435976100  1
2003 Warringer J, Blomberg A. Automated screening in environmental arrays allows analysis of quantitative phenotypic profiles in Saccharomyces cerevisiae. Yeast (Chichester, England). 20: 53-67. PMID 12489126 DOI: 10.1002/yea.931  1
Show low-probability matches.