Holly Bik - Publications

Affiliations: 
University of California, Davis, Davis, CA 

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wilkins LGE, Leray M, O'Dea A, Yuen B, Peixoto R, Pereira TJ, Bik HM, Coil DA, Duffy JE, Herre EA, Lessios H, Lucey NM, Mejia LC, Rasher DB, Sharp K, et al. Host-associated microbiomes drive structure and function of marine ecosystems. Plos Biology. 17: e3000533. PMID 31710600 DOI: 10.1371/journal.pbio.3000533  0.64
2019 Bik HM, Alexiev A, Aulakh SK, Bharadwaj L, Flanagan J, Haggerty JM, Hird SM, Jospin G, Lang JM, Sauder LA, Neufeld JD, Shaver A, Sethi A, Eisen JA, Coil DA. Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria. Msphere. 4. PMID 30787117 DOI: 10.1128/mSphere.00043-19  0.64
2016 Creer S, Deiner K, Frey S, Porazinska D, Taberlet P, Thomas WK, Potter C, Bik HM, Freckleton R. The ecologist's field guide to sequence-based identification of biodiversity Methods in Ecology and Evolution. 7: 1008-1018. DOI: 10.1111/2041-210X.12574  0.64
2015 Bik HM, Dove AD, Goldstein MC, Helm RR, MacPherson R, Martini K, Warneke A, McClain C. Ten simple rules for effective online outreach. Plos Computational Biology. 11: e1003906. PMID 25879439 DOI: 10.1371/journal.pcbi.1003906  0.64
2015 Martin LJ, Adams RI, Bateman A, Bik HM, Hawks J, Hird SM, Hughes D, Kembel SW, Kinney K, Kolokotronis SO, Levy G, McClain C, Meadow JF, Medina RF, et al. Evolution of the indoor biome. Trends in Ecology & Evolution. 30: 223-32. PMID 25770744 DOI: 10.1016/j.tree.2015.02.001  0.64
2014 Bik HM, Coil DA, Eisen JA. microBEnet: lessons learned from building an interdisciplinary scientific community in the online sphere. Plos Biology. 12: e1001884. PMID 24937755 DOI: 10.1371/journal.pbio.1001884  0.64
2014 Morgan MJ, Bass D, Bik H, Birky CW, Blaxter M, Crisp MD, Derycke S, Fitch D, Fontaneto D, Hardy CM, King AJ, Kiontke KC, Moens T, Pawlowski JW, Porazinska D, et al. A critique of Rossberg et al.: Noise obscures the genetic signal of meiobiotal ecospecies in ecogenomic datasets. Proceedings. Biological Sciences / the Royal Society. 281: 20133076. PMID 24671969 DOI: 10.1098/rspb.2013.3076  0.64
2014 Darling AE, Jospin G, Lowe E, Matsen FA, Bik HM, Eisen JA. PhyloSift: phylogenetic analysis of genomes and metagenomes. Peerj. 2: e243. PMID 24482762 DOI: 10.7717/peerj.243  0.64
2014 Chariton AA, Ho KT, Proestou D, Bik H, Simpson SL, Portis LM, Cantwell MG, Baguley JG, Burgess RM, Pelletier MM, Perron M, Gunsch C, Matthews RA. A molecular-based approach for examining responses of eukaryotes in microcosms to contaminant-spiked estuarine sediments. Environmental Toxicology and Chemistry / Setac. 33: 359-69. PMID 24399368 DOI: 10.1002/etc.2450  0.64
2013 Bik HM, Fournier D, Sung W, Bergeron RD, Thomas WK. Intra-genomic variation in the ribosomal repeats of nematodes. Plos One. 8: e78230. PMID 24147124 DOI: 10.1371/journal.pone.0078230  0.64
2013 Bates ST, Ahrendt S, Bik HM, Bruns TD, Caporaso JG, Cole J, Dwan M, Fierer N, Gu D, Houston S, Knight R, Leff J, Lewis C, Maestre JP, McDonald D, et al. Meeting report: fungal its workshop (october 2012). Standards in Genomic Sciences. 8: 118-23. PMID 23961317 DOI: 10.4056/sigs.3737409  0.64
2013 Burleigh JG, Alphonse K, Alverson AJ, Bik HM, Blank C, Cirranello AL, Cui H, Daly M, Dietterich TG, Gasparich G, Irvine J, Julius M, Kaufman S, Law E, Liu J, et al. Next-generation phenomics for the Tree of Life. Plos Currents. 5. PMID 23827969 DOI: 10.1371/currents.tol.085c713acafc8711b2ff7010a4b03733  0.64
2013 Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, ... ... Bik HM, et al. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Bmc Bioinformatics. 14: 158. PMID 23668630 DOI: 10.1186/1471-2105-14-158  0.64
2013 Bik HM, Goldstein MC. An introduction to social media for scientists. Plos Biology. 11: e1001535. PMID 23630451 DOI: 10.1371/journal.pbio.1001535  0.64
2013 Ho KT, Chariton AA, Portis LM, Proestou D, Cantwell MG, Baguley JG, Burgess RM, Simpson S, Pelletier MC, Perron MM, Gunsch CK, Bik HM, Katz D, Kamikawa A. Use of a novel sediment exposure to determine the effects of triclosan on estuarine benthic communities. Environmental Toxicology and Chemistry / Setac. 32: 384-92. PMID 23161706 DOI: 10.1002/etc.2067  0.64
2012 Robbins RJ, Amaral-Zettler L, Bik H, Blum S, Edwards J, Field D, Garrity G, Gilbert JA, Kottmann R, Krishtalka L, Lapp H, Lawrence C, Morrison N, Tuama EÓ, Parr C, et al. RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011. Standards in Genomic Sciences. 7: 159-65. PMID 23451294 DOI: 10.4056/sigs.3156511  0.64
2012 Bik HM, Halanych KM, Sharma J, Thomas WK. Dramatic shifts in benthic microbial eukaryote communities following the Deepwater Horizon oil spill. Plos One. 7: e38550. PMID 22701662 DOI: 10.1371/journal.pone.0038550  0.64
2012 Bik HM, Porazinska DL, Creer S, Caporaso JG, Knight R, Thomas WK. Sequencing our way towards understanding global eukaryotic biodiversity. Trends in Ecology & Evolution. 27: 233-43. PMID 22244672 DOI: 10.1016/j.tree.2011.11.010  0.64
2012 Bik HM, Sung W, De Ley P, Baldwin JG, Sharma J, Rocha-Olivares A, Thomas WK. Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments. Molecular Ecology. 21: 1048-59. PMID 21985648 DOI: 10.1111/j.1365-294X.2011.05297.x  0.64
2012 Thaler AD, Zelnio KA, Freitag A, MacPherson R, Shiffman D, Bik H, Goldstein MC, McClain C. Digital environmentalism: Tools and strategies for the evolving online ecosystem Environmental Leadership: a Reference Handbook. 364-372. DOI: 10.4135/9781452218601.n39  0.64
2012 Bik HM, Thomas WK. Metagenomics will highlight and drive links to taxonomic data: Reply to Murray Trends in Ecology and Evolution. 27: 652-653. DOI: 10.1016/j.tree.2012.09.005  0.64
2011 Bhadury P, Bik H, Lambshead JD, Austen MC, Smerdon GR, Rogers AD. Molecular diversity of fungal phylotypes co-amplified alongside nematodes from coastal and deep-sea marine environments. Plos One. 6: e26445. PMID 22046287 DOI: 10.1371/journal.pone.0026445  0.64
2010 Bik HM, Thomas WK, Lunt DH, Lambshead PJD. Low endemism, continued deep-shallow interchanges, and evidence for cosmopolitan distributions in free-living marine nematodes (order Enoplida) Bmc Evolutionary Biology. 10. PMID 21167065 DOI: 10.1186/1471-2148-10-389  0.64
2010 Bik HM, Lambshead PJD, Thomas WK, Lunt DH. Moving towards a complete molecular framework of the Nematoda: A focus on the Enoplida and early-branching clades Bmc Evolutionary Biology. 10. PMID 21073704 DOI: 10.1186/1471-2148-10-353  0.64
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